Wall clock time and date at job start Mon Mar 30 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 110.64079 * 2 1 4 4 C 1.54596 * 110.72609 * 123.15026 * 2 1 3 5 5 C 1.53991 * 105.13923 * 140.31562 * 4 2 1 6 6 N 1.47900 * 107.05921 * 1.22891 * 5 4 2 7 7 C 1.46901 * 110.99892 * 214.15781 * 6 5 4 8 8 H 1.09000 * 109.47399 * 53.74209 * 7 6 5 9 9 C 1.50697 * 109.47006 * 173.74741 * 7 6 5 10 10 H 1.07999 * 120.00674 * 54.91896 * 9 7 6 11 11 C 1.37879 * 119.99838 * 234.91468 * 9 7 6 12 12 N 1.31510 * 120.00179 * 187.05761 * 11 9 7 13 13 Si 1.86799 * 119.99966 * 7.05538 * 11 9 7 14 14 H 1.48497 * 109.47376 * 274.24874 * 13 11 9 15 15 H 1.48504 * 109.47149 * 34.24517 * 13 11 9 16 16 H 1.48502 * 109.47085 * 154.24755 * 13 11 9 17 17 C 1.50701 * 109.46658 * 293.74515 * 7 6 5 18 18 C 1.38239 * 120.00126 * 313.38725 * 17 7 6 19 19 C 1.38232 * 119.99927 * 179.78972 * 18 17 7 20 20 C 1.38237 * 120.00101 * 0.46874 * 19 18 17 21 21 C 1.38237 * 119.99823 * 359.75878 * 20 19 18 22 22 C 1.38228 * 119.99907 * 0.03321 * 21 20 19 23 23 C 1.48532 * 105.81953 * 334.66522 * 6 5 4 24 24 H 1.08998 * 109.47259 * 298.30155 * 1 2 3 25 25 H 1.08995 * 109.47453 * 58.30146 * 1 2 3 26 26 H 1.09004 * 109.47286 * 178.30521 * 1 2 3 27 27 H 1.00899 * 111.00341 * 61.70276 * 3 2 1 28 28 H 1.00903 * 110.99798 * 185.65553 * 3 2 1 29 29 H 1.08994 * 110.30759 * 21.40046 * 4 2 1 30 30 H 1.09007 * 110.39300 * 259.27903 * 4 2 1 31 31 H 1.08992 * 109.91823 * 241.87047 * 5 4 2 32 32 H 1.09006 * 109.91208 * 120.57938 * 5 4 2 33 33 H 0.97001 * 120.00385 * 180.02562 * 12 11 9 34 34 H 1.08001 * 120.00053 * 359.97438 * 18 17 7 35 35 H 1.08001 * 120.00258 * 180.25145 * 19 18 17 36 36 H 1.08002 * 119.99899 * 179.79302 * 20 19 18 37 37 H 1.07997 * 119.99519 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.99688 * 179.97438 * 22 21 20 39 39 H 1.09003 * 110.67071 * 157.64334 * 23 6 5 40 40 H 1.09001 * 110.66775 * 280.77741 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0478 1.3747 0.0000 4 6 2.0771 -0.7907 1.2106 5 6 3.2893 -1.5697 0.6675 6 7 3.4318 -1.2104 -0.7601 7 6 3.9212 -2.3523 -1.5440 8 1 3.2762 -3.2140 -1.3724 9 6 3.9078 -1.9986 -3.0089 10 1 4.4264 -1.1174 -3.3565 11 6 3.2334 -2.8002 -3.9054 12 7 3.3353 -2.5727 -5.1967 13 14 2.1751 -4.2093 -3.2860 14 1 3.0208 -5.4137 -3.0879 15 1 1.5480 -3.8271 -1.9952 16 1 1.1150 -4.5072 -4.2823 17 6 5.3285 -2.6860 -1.1207 18 6 6.2654 -1.6792 -0.9811 19 6 7.5551 -1.9848 -0.5885 20 6 7.9105 -3.2983 -0.3449 21 6 6.9748 -4.3056 -0.4890 22 6 5.6840 -3.9995 -0.8774 23 6 2.0783 -0.7966 -1.2105 24 1 -0.3634 0.4872 0.9048 25 1 -0.3634 0.5400 -0.8743 26 1 -0.3634 -1.0272 -0.0304 27 1 1.7574 1.8705 0.8294 28 1 3.0525 1.3826 -0.0928 29 1 1.3208 -1.4806 1.5848 30 1 2.3893 -0.1076 2.0007 31 1 3.1162 -2.6413 0.7652 32 1 4.1887 -1.2848 1.2136 33 1 2.8606 -3.1363 -5.8275 34 1 5.9890 -0.6535 -1.1759 35 1 8.2860 -1.1978 -0.4756 36 1 8.9191 -3.5374 -0.0414 37 1 7.2524 -5.3317 -0.2982 38 1 4.9531 -4.7866 -0.9903 39 1 2.1444 -0.1593 -2.0924 40 1 1.4561 -1.6688 -1.4107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405844486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:37 Heat of formation + Delta-G solvation = 10.294269 kcal Electronic energy + Delta-G solvation = -20243.671045 eV Core-core repulsion = 17442.899950 eV Total energy + Delta-G solvation = -2800.771095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78277 -39.51126 -36.26651 -34.37982 -32.45922 -31.61126 -30.59248 -30.08952 -28.43807 -26.69720 -24.20327 -23.33760 -22.47591 -21.04187 -20.27447 -19.15466 -17.60004 -16.99986 -16.75600 -16.46994 -15.92868 -15.81828 -15.12180 -15.01931 -14.64630 -14.46897 -14.20512 -14.07097 -13.74779 -13.46706 -13.40760 -12.93630 -12.85169 -12.68456 -12.51664 -12.37524 -12.00283 -11.87659 -11.76459 -11.62818 -11.57000 -11.23099 -10.81637 -9.65995 -9.51413 -9.36808 -9.06684 -8.36290 -6.37437 0.64354 0.70708 1.21773 1.22569 1.30843 2.22433 2.87302 3.16924 3.35974 3.59301 3.71653 3.87248 4.10668 4.17029 4.25571 4.34149 4.38123 4.42720 4.49077 4.63043 4.78183 4.80501 4.83743 4.90231 4.92523 4.99453 5.02766 5.10726 5.21621 5.26458 5.34086 5.38024 5.46090 5.71819 5.76151 5.96357 6.06757 6.20325 6.33286 6.39238 6.60098 6.69665 6.78604 7.26204 8.80533 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.009885 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.038685 B = 2831.860888 C = 4026.273305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.116 3.884 3 N -0.832 5.832 4 C -0.148 4.148 5 C 0.032 3.968 6 N -0.509 5.509 7 C 0.213 3.787 8 H 0.006 0.994 9 C -0.484 4.484 10 H 0.037 0.963 11 C 0.026 3.974 12 N -0.936 5.936 13 Si 0.923 3.077 14 H -0.265 1.265 15 H -0.256 1.256 16 H -0.282 1.282 17 C -0.056 4.056 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.138 4.138 21 C -0.122 4.122 22 C -0.155 4.155 23 C 0.067 3.933 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.348 0.652 28 H 0.347 0.653 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.267 0.733 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 0.722 15.432 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.022 3.978 3 N -0.363 5.363 4 C -0.188 4.188 5 C -0.096 4.096 6 N -0.233 5.233 7 C 0.105 3.895 8 H 0.023 0.977 9 C -0.523 4.523 10 H 0.055 0.945 11 C -0.173 4.173 12 N -0.576 5.576 13 Si 0.748 3.252 14 H -0.190 1.190 15 H -0.180 1.180 16 H -0.208 1.208 17 C -0.057 4.057 18 C -0.127 4.127 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.140 4.140 22 C -0.174 4.174 23 C -0.061 4.061 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.360 1.182 14.510 14.562 hybrid contribution -0.602 -1.727 0.194 1.839 sum -0.242 -0.545 14.704 14.716 Atomic orbital electron populations 1.21686 0.92462 1.01731 1.02851 1.21656 0.95166 0.88375 0.92570 1.58683 1.17808 1.13550 1.46241 1.23237 0.97059 1.00030 0.98506 1.22848 0.98780 0.97312 0.90642 1.64819 1.22677 1.34594 1.01206 1.18751 0.89770 0.88727 0.92216 0.97651 1.20808 1.31601 1.09770 0.90115 0.94499 1.25743 0.97387 0.99458 0.94741 1.70015 1.43955 1.41187 1.02400 0.86120 0.79788 0.80601 0.78652 1.19036 1.18025 1.20841 1.20207 0.97026 0.93597 0.94900 1.20948 0.93363 0.98989 0.99443 1.21419 0.95739 0.97640 0.99581 1.21344 1.00190 0.92457 1.01576 1.21284 0.92522 1.00406 0.99778 1.21120 0.97906 0.95596 1.02776 1.22897 0.88868 0.96723 0.97635 0.90356 0.92579 0.92568 0.83815 0.83923 0.90585 0.89425 0.95878 0.90846 0.92371 0.87239 0.84221 0.83383 0.84134 0.87933 0.92383 0.96085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.80 71.98 0.63 -2.67 16 2 C 0.12 3.45 1.20 4.73 0.01 3.46 16 3 N -0.83 -22.69 9.01 -146.84 -1.32 -24.01 16 4 C -0.15 -3.92 6.23 31.47 0.20 -3.73 16 5 C 0.03 1.08 6.05 86.45 0.52 1.61 16 6 N -0.51 -20.77 4.49 -866.65 -3.89 -24.67 16 7 C 0.21 10.00 1.37 43.42 0.06 10.06 16 8 H 0.01 0.29 4.24 -2.39 -0.01 0.28 16 9 C -0.48 -27.46 7.86 25.60 0.20 -27.26 16 10 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 11 C 0.03 1.49 5.47 84.66 0.46 1.95 16 12 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 13 Si 0.92 44.38 26.84 68.60 1.84 46.22 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.26 -11.64 6.06 99.48 0.60 -11.04 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 17 C -0.06 -2.42 4.22 -19.86 -0.08 -2.51 16 18 C -0.11 -4.31 9.26 22.27 0.21 -4.10 16 19 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 20 C -0.14 -3.98 10.05 22.27 0.22 -3.75 16 21 C -0.12 -3.86 10.05 22.27 0.22 -3.64 16 22 C -0.16 -6.08 9.67 22.27 0.22 -5.86 16 23 C 0.07 2.73 4.74 86.65 0.41 3.14 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.43 8.13 -2.38 -0.02 1.41 16 27 H 0.35 7.28 9.05 -89.69 -0.81 6.46 16 28 H 0.35 10.20 8.86 -89.69 -0.79 9.40 16 29 H 0.08 1.85 7.85 -2.39 -0.02 1.83 16 30 H 0.09 1.90 8.05 -2.38 -0.02 1.88 16 31 H 0.02 0.81 7.63 -2.39 -0.02 0.80 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.11 4.54 7.92 -2.91 -0.02 4.52 16 35 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 36 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.10 3.98 7.99 -2.91 -0.02 3.96 16 39 H 0.06 2.74 7.94 -2.39 -0.02 2.72 16 40 H 0.02 0.92 7.11 -2.39 -0.02 0.90 16 Total: -1.00 -65.57 319.32 -0.25 -65.82 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.68 Total: 31.59 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.50 Total: -37.10 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.92 Total: -106.53 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.84 Total: 46.22 kcal Total: -65.57 -0.25 -65.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405844486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.115 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds