Wall clock time and date at job start Mon Mar 30 2020 07:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 110.64133 * 2 1 4 4 C 1.54603 * 110.72620 * 123.14760 * 2 1 3 5 5 C 1.53993 * 105.13562 * 140.31534 * 4 2 1 6 6 N 1.47896 * 107.06340 * 1.22765 * 5 4 2 7 7 C 1.46892 * 111.00253 * 214.15341 * 6 5 4 8 8 H 1.09004 * 109.47387 * 57.23338 * 7 6 5 9 9 C 1.50697 * 109.47228 * 297.23173 * 7 6 5 10 10 H 1.07997 * 120.00073 * 327.87071 * 9 7 6 11 11 C 1.37882 * 120.00420 * 147.87325 * 9 7 6 12 12 N 1.31515 * 119.99577 * 1.01427 * 11 9 7 13 13 Si 1.86797 * 120.00410 * 181.01895 * 11 9 7 14 14 H 1.48498 * 109.47016 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.46999 * 299.99828 * 13 11 9 16 16 H 1.48504 * 109.46770 * 59.99883 * 13 11 9 17 17 C 1.50698 * 109.47205 * 177.23293 * 7 6 5 18 18 C 1.38237 * 120.00033 * 46.58375 * 17 7 6 19 19 C 1.38236 * 119.99743 * 179.74905 * 18 17 7 20 20 C 1.38233 * 120.00108 * 0.54325 * 19 18 17 21 21 C 1.38231 * 120.00068 * 359.70697 * 20 19 18 22 22 C 1.38237 * 120.00109 * 0.02562 * 21 20 19 23 23 C 1.48531 * 105.81947 * 334.66952 * 6 5 4 24 24 H 1.09003 * 109.47494 * 298.29831 * 1 2 3 25 25 H 1.08993 * 109.47153 * 58.30347 * 1 2 3 26 26 H 1.09001 * 109.46679 * 178.30244 * 1 2 3 27 27 H 1.00903 * 111.00465 * 61.70004 * 3 2 1 28 28 H 1.00899 * 110.99902 * 185.65133 * 3 2 1 29 29 H 1.09006 * 110.30468 * 21.40450 * 4 2 1 30 30 H 1.08995 * 110.31176 * 259.23457 * 4 2 1 31 31 H 1.09003 * 109.91927 * 241.87063 * 5 4 2 32 32 H 1.09006 * 109.91340 * 120.58205 * 5 4 2 33 33 H 0.97008 * 120.00064 * 358.26991 * 12 11 9 34 34 H 1.07996 * 119.99834 * 359.97438 * 18 17 7 35 35 H 1.08005 * 119.99951 * 180.27426 * 19 18 17 36 36 H 1.08005 * 119.99911 * 179.72777 * 20 19 18 37 37 H 1.08002 * 120.00070 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.99927 * 179.97438 * 22 21 20 39 39 H 1.09000 * 110.67138 * 157.64079 * 23 6 5 40 40 H 1.09000 * 110.66681 * 280.77268 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0478 1.3747 0.0000 4 6 2.0771 -0.7907 1.2107 5 6 3.2894 -1.5697 0.6675 6 7 3.4318 -1.2105 -0.7601 7 6 3.9212 -2.3523 -1.5439 8 1 3.2416 -3.1956 -1.4209 9 6 5.2954 -2.7403 -1.0622 10 1 5.9669 -1.9855 -0.6804 11 6 5.6955 -4.0590 -1.1088 12 7 4.8854 -4.9752 -1.5922 13 14 7.3882 -4.5441 -0.4852 14 1 7.5731 -6.0089 -0.6439 15 1 8.4277 -3.8260 -1.2656 16 1 7.5091 -4.1830 0.9502 17 6 3.9889 -1.9700 -3.0000 18 6 4.5598 -0.7676 -3.3731 19 6 4.6265 -0.4192 -4.7092 20 6 4.1122 -1.2681 -5.6713 21 6 3.5366 -2.4681 -5.2979 22 6 3.4748 -2.8191 -3.9622 23 6 2.0783 -0.7966 -1.2105 24 1 -0.3634 0.4872 0.9049 25 1 -0.3633 0.5399 -0.8743 26 1 -0.3633 -1.0273 -0.0304 27 1 1.7574 1.8706 0.8294 28 1 3.0525 1.3826 -0.0928 29 1 1.3208 -1.4807 1.5849 30 1 2.3896 -0.1064 1.9995 31 1 3.1162 -2.6414 0.7653 32 1 4.1887 -1.2848 1.2136 33 1 3.9970 -4.7273 -1.8927 34 1 4.9570 -0.1020 -2.6211 35 1 5.0766 0.5182 -5.0011 36 1 4.1603 -0.9939 -6.7149 37 1 3.1344 -3.1312 -6.0495 38 1 3.0248 -3.7564 -3.6705 39 1 2.1444 -0.1593 -2.0923 40 1 1.4561 -1.6688 -1.4107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405844487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:39 Heat of formation + Delta-G solvation = 23.878651 kcal Electronic energy + Delta-G solvation = -20245.519470 eV Core-core repulsion = 17445.337438 eV Total energy + Delta-G solvation = -2800.182032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.30085 -38.02224 -34.83500 -32.52626 -30.75625 -30.05210 -29.07873 -28.58526 -26.71930 -24.37448 -23.11912 -21.73019 -20.77214 -19.78208 -19.14151 -16.81073 -16.14040 -15.61791 -15.35798 -14.72818 -14.40216 -13.80014 -13.79018 -13.51620 -13.11391 -12.89886 -12.63498 -12.49988 -12.25393 -11.88819 -11.84648 -11.54546 -11.17001 -10.95179 -10.87306 -10.72771 -10.48446 -10.38341 -10.20129 -10.09962 -9.96004 -8.92935 -8.54765 -8.41660 -8.09161 -7.67031 -7.45658 -6.45813 -4.17814 2.23430 2.27630 3.38800 3.40861 3.58879 4.42698 4.59223 4.71499 4.91428 4.97332 5.15635 5.28898 5.39606 5.60454 5.62674 5.70006 5.77664 5.81567 5.88059 6.02520 6.12149 6.14973 6.18888 6.31361 6.37712 6.39507 6.42831 6.59577 6.64033 6.76984 6.88025 6.97144 7.25427 7.27177 7.45624 7.58838 7.62450 7.75712 7.90610 7.94890 8.18054 8.48679 8.74948 9.52390 10.90001 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.009250 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.615885 B = 3026.416433 C = 4348.981749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.113 3.887 3 N -0.830 5.830 4 C -0.163 4.163 5 C 0.058 3.942 6 N -0.505 5.505 7 C 0.222 3.778 8 H 0.017 0.983 9 C -0.573 4.573 10 H 0.059 0.941 11 C 0.023 3.977 12 N -0.903 5.903 13 Si 1.069 2.931 14 H -0.283 1.283 15 H -0.286 1.286 16 H -0.287 1.287 17 C -0.028 4.028 18 C -0.096 4.096 19 C -0.132 4.132 20 C -0.151 4.151 21 C -0.126 4.126 22 C -0.127 4.127 23 C 0.044 3.956 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.331 0.669 28 H 0.352 0.648 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.269 0.731 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 8.121 0.999 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.019 3.981 3 N -0.360 5.360 4 C -0.204 4.204 5 C -0.070 4.070 6 N -0.229 5.229 7 C 0.116 3.884 8 H 0.034 0.966 9 C -0.612 4.612 10 H 0.077 0.923 11 C -0.183 4.183 12 N -0.539 5.539 13 Si 0.896 3.104 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.214 1.214 17 C -0.030 4.030 18 C -0.114 4.114 19 C -0.150 4.150 20 C -0.169 4.169 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.085 4.085 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.166 0.834 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.710 7.316 0.454 8.713 hybrid contribution -0.960 0.155 0.678 1.185 sum -5.670 7.471 1.132 9.447 Atomic orbital electron populations 1.21711 0.94126 1.01425 1.01755 1.21665 0.93899 0.88206 0.94303 1.58800 1.18135 1.14025 1.45050 1.23361 0.98720 0.99910 0.98380 1.22468 0.96267 0.97861 0.90421 1.64823 1.19794 1.36601 1.01671 1.18678 0.96952 0.86810 0.85993 0.96590 1.21732 0.99011 0.95421 1.44988 0.92264 1.25869 1.05001 0.92755 0.94649 1.70837 1.08612 1.36279 1.38174 0.83538 0.74427 0.76241 0.76147 1.20786 1.21278 1.21369 1.20469 0.92788 0.92511 0.97186 1.20897 0.98732 0.96938 0.94875 1.21031 1.01077 0.99261 0.93652 1.20825 1.02114 0.95649 0.98328 1.20921 1.00931 0.96767 0.95820 1.21001 1.01253 0.99503 0.92818 1.23238 0.90898 0.97252 0.97064 0.93082 0.91979 0.92499 0.85736 0.83400 0.91900 0.92058 0.93945 0.91159 0.91928 0.86236 0.87441 0.87606 0.87492 0.87277 0.90107 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.80 37.16 0.33 -1.37 16 2 C 0.11 1.67 1.20 -129.74 -0.16 1.52 16 3 N -0.83 -11.39 9.01 2.24 0.02 -11.37 16 4 C -0.16 -2.47 6.24 -25.37 -0.16 -2.63 16 5 C 0.06 1.12 5.93 -2.76 -0.02 1.10 16 6 N -0.50 -10.26 4.50 -225.29 -1.01 -11.27 16 7 C 0.22 5.29 1.22 -70.02 -0.09 5.20 16 8 H 0.02 0.43 6.06 -51.93 -0.31 0.12 16 9 C -0.57 -15.18 7.70 -34.44 -0.27 -15.44 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 12 N -0.90 -26.03 13.63 55.43 0.76 -25.27 16 13 Si 1.07 24.66 29.90 -169.99 -5.08 19.58 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.03 -0.64 3.95 -104.62 -0.41 -1.05 16 18 C -0.10 -2.02 8.84 -39.58 -0.35 -2.37 16 19 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 20 C -0.15 -2.70 10.05 -39.59 -0.40 -3.10 16 21 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 22 C -0.13 -2.77 9.57 -39.58 -0.38 -3.15 16 23 C 0.04 0.80 4.77 -1.90 -0.01 0.79 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 27 H 0.33 3.81 9.04 -39.29 -0.36 3.46 16 28 H 0.35 5.18 8.86 -39.29 -0.35 4.83 16 29 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 30 H 0.06 0.83 8.04 -51.93 -0.42 0.42 16 31 H 0.04 0.91 7.69 -51.93 -0.40 0.51 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.27 7.68 5.87 -40.82 -0.24 7.44 16 34 H 0.12 2.52 7.92 -52.49 -0.42 2.11 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.11 2.43 7.43 -52.49 -0.39 2.04 16 39 H 0.08 1.54 7.67 -51.93 -0.40 1.15 16 40 H 0.04 0.69 7.90 -51.93 -0.41 0.28 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -28.14 321.04 -9.54 -37.68 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.26 Total: 11.45 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -2.79 Total: -25.63 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.24 Total: -47.91 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.14 -9.54 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405844487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.561 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds