Wall clock time and date at job start Mon Mar 30 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.39872 * 126.04056 * 90.02389 * 10 9 7 12 12 C 1.50695 * 125.89532 * 359.95888 * 11 10 9 13 13 C 1.53783 * 113.61120 * 219.13280 * 12 11 10 14 14 C 1.53956 * 87.01924 * 220.04951 * 13 12 11 15 15 C 1.53779 * 87.11133 * 25.36413 * 14 13 12 16 16 N 1.30834 * 108.20238 * 179.97438 * 11 10 9 17 17 N 1.40085 * 108.20803 * 0.02562 * 16 11 10 18 18 H 0.96998 * 126.04217 * 180.02562 * 17 16 11 19 19 C 1.34949 * 107.92267 * 359.76029 * 17 16 11 20 20 C 1.50705 * 126.12688 * 180.24009 * 19 17 16 21 21 C 1.53776 * 113.61348 * 37.67437 * 20 19 17 22 22 C 1.53778 * 87.08276 * 220.02103 * 21 20 19 23 23 C 1.53777 * 87.08084 * 25.43041 * 22 21 20 24 24 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 26 26 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 27 27 H 1.09001 * 112.85732 * 350.33051 * 12 11 10 28 28 H 1.09002 * 113.61815 * 334.56874 * 13 12 11 29 29 H 1.08998 * 113.61683 * 105.47577 * 13 12 11 30 30 H 1.09004 * 113.53762 * 270.80882 * 14 13 12 31 31 H 1.09005 * 113.74541 * 139.94696 * 14 13 12 32 32 H 1.09001 * 113.61148 * 220.08940 * 15 14 13 33 33 H 1.08999 * 113.61499 * 89.19004 * 15 14 13 34 34 H 1.08993 * 112.84892 * 168.97817 * 20 19 17 35 35 H 1.09004 * 113.61738 * 334.56172 * 21 20 19 36 36 H 1.09002 * 113.61962 * 105.47145 * 21 20 19 37 37 H 1.09005 * 113.61025 * 270.88664 * 22 21 20 38 38 H 1.08995 * 113.70127 * 139.99335 * 22 21 20 39 39 H 1.09000 * 113.61938 * 220.02359 * 23 22 21 40 40 H 1.09000 * 113.61689 * 89.11535 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0137 -2.6150 -0.0010 11 6 4.2880 -3.3910 -1.1319 12 6 4.1314 -2.9508 -2.5646 13 6 3.5759 -4.0474 -3.4887 14 6 4.5787 -3.5517 -4.5465 15 6 5.4334 -3.0304 -3.3793 16 7 4.7036 -4.5650 -0.7311 17 7 4.7064 -4.5735 0.6698 18 1 4.9696 -5.3161 1.2355 19 6 4.2837 -3.3639 1.0932 20 6 4.1361 -2.9264 2.5278 21 6 5.2411 -3.4638 3.4525 22 6 4.1430 -3.6849 4.5060 23 6 3.1504 -3.7867 3.3359 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 -0.8911 26 1 3.8751 -0.6805 0.8889 27 1 3.6143 -1.9961 -2.6602 28 1 3.7775 -5.0590 -3.1362 29 1 2.5336 -3.8956 -3.7689 30 1 4.1830 -2.7618 -5.1850 31 1 5.0536 -4.3541 -5.1112 32 1 5.8883 -2.0586 -3.5712 33 1 6.1437 -3.7633 -2.9968 34 1 3.9641 -1.8548 2.6279 35 1 5.6971 -4.3878 3.0968 36 1 5.9756 -2.7110 3.7387 37 1 3.9736 -2.8205 5.1482 38 1 4.2540 -4.6131 5.0665 39 1 2.1970 -3.2945 3.5278 40 1 3.0349 -4.7988 2.9481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409438020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:33 Heat of formation + Delta-G solvation = 95.166250 kcal Electronic energy + Delta-G solvation = -19757.919742 eV Core-core repulsion = 16960.828973 eV Total energy + Delta-G solvation = -2797.090769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.92407 -38.47703 -37.56653 -33.36127 -31.34552 -30.68155 -27.47134 -25.56812 -25.38486 -25.22238 -24.95249 -22.26742 -20.72588 -19.29072 -18.70508 -18.12853 -16.77345 -16.65717 -15.46241 -15.03960 -14.64800 -14.30416 -13.99600 -13.71879 -13.02534 -12.64261 -12.36999 -12.25203 -12.13162 -12.05716 -11.84797 -11.68408 -11.48191 -10.86333 -10.58854 -10.54308 -10.33781 -10.25238 -10.15244 -10.07567 -9.99347 -9.94920 -9.49173 -9.24775 -8.51376 -8.49166 -7.37267 -5.98621 -3.95159 2.48697 3.32638 3.40413 3.43384 3.43863 3.50264 4.48303 4.75165 4.83313 4.86002 5.00477 5.07917 5.10028 5.20105 5.33471 5.42359 5.50015 5.60529 5.74772 5.79991 5.92864 5.95334 5.97522 6.06989 6.15233 6.18703 6.21196 6.28446 6.29553 6.38589 6.52356 6.59612 6.64389 6.82364 7.02776 7.12583 7.41240 7.50992 7.81061 7.94855 8.41600 8.63884 9.09613 9.63421 11.14819 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.010220 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.835549 B = 2739.171964 C = 4721.000819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.500 4.500 8 H 0.070 0.930 9 C 0.053 3.947 10 C -0.169 4.169 11 C 0.093 3.907 12 C -0.028 4.028 13 C -0.128 4.128 14 C -0.142 4.142 15 C -0.129 4.129 16 N -0.307 5.307 17 N -0.487 5.487 18 H 0.426 0.574 19 C 0.078 3.922 20 C -0.036 4.036 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.130 4.130 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.021 0.979 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.616 -6.843 1.786 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.539 4.539 8 H 0.089 0.911 9 C 0.015 3.985 10 C -0.179 4.179 11 C -0.073 4.073 12 C -0.049 4.049 13 C -0.166 4.166 14 C -0.179 4.179 15 C -0.167 4.167 16 N -0.130 5.130 17 N -0.195 5.195 18 H 0.268 0.732 19 C -0.048 4.048 20 C -0.057 4.057 21 C -0.177 4.177 22 C -0.178 4.178 23 C -0.168 4.168 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.132 0.868 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.855 -7.853 1.420 13.472 hybrid contribution 0.080 1.263 0.616 1.408 sum 10.934 -6.589 2.037 12.928 Atomic orbital electron populations 1.69912 1.06211 1.26639 1.51567 1.24989 0.94646 0.98762 0.94949 0.86895 0.80446 0.84086 0.78631 1.20250 1.21501 1.18955 1.21016 0.88746 0.94194 1.49896 0.91145 1.18098 0.96638 0.87309 0.96451 1.20109 1.07719 1.00145 0.89946 1.21843 0.98248 0.91178 0.95997 1.20978 0.97510 1.00076 0.86288 1.22931 0.98983 0.98851 0.95826 1.22843 0.98122 1.00587 0.96350 1.22934 0.96338 1.01192 0.96237 1.76996 1.26482 1.21154 0.88367 1.45865 1.56221 1.12269 1.05189 0.73177 1.20389 1.01916 0.86729 0.95805 1.21147 0.96342 1.01491 0.86677 1.23002 0.96772 1.00895 0.96988 1.22834 0.96724 1.01844 0.96442 1.22921 0.98490 0.99880 0.95522 0.92866 0.96294 0.96124 0.86767 0.89873 0.91334 0.90245 0.91865 0.91615 0.90193 0.86393 0.90965 0.91136 0.89871 0.91702 0.90322 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.50 -13.99 9.65 -34.44 -0.33 -14.32 16 8 H 0.07 2.20 7.98 -52.49 -0.42 1.78 16 9 C 0.05 1.28 3.95 -29.03 -0.11 1.16 16 10 C -0.17 -3.66 5.29 -105.05 -0.56 -4.22 16 11 C 0.09 1.89 6.27 -82.41 -0.52 1.37 16 12 C -0.03 -0.51 4.04 -90.96 -0.37 -0.88 16 13 C -0.13 -2.04 7.63 -25.83 -0.20 -2.24 16 14 C -0.14 -1.89 8.09 -25.83 -0.21 -2.10 16 15 C -0.13 -1.92 7.63 -25.92 -0.20 -2.12 16 16 N -0.31 -5.88 12.32 33.67 0.41 -5.47 16 17 N -0.49 -8.30 7.16 33.48 0.24 -8.07 16 18 H 0.43 5.77 8.32 -182.61 -1.52 4.25 16 19 C 0.08 1.45 6.25 -82.26 -0.51 0.94 16 20 C -0.04 -0.59 4.05 -90.96 -0.37 -0.95 16 21 C -0.14 -1.71 7.62 -25.92 -0.20 -1.90 16 22 C -0.14 -1.62 8.08 -25.92 -0.21 -1.83 16 23 C -0.13 -1.88 7.63 -25.92 -0.20 -2.08 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.45 6.93 -51.93 -0.36 0.09 16 26 H 0.02 0.49 6.19 -51.93 -0.32 0.17 16 27 H 0.11 2.22 7.36 -51.93 -0.38 1.84 16 28 H 0.08 1.36 7.79 -51.93 -0.40 0.95 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.12 2.07 7.04 -51.93 -0.37 1.71 16 35 H 0.07 0.81 7.30 -51.93 -0.38 0.43 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -31.10 321.85 -10.01 -41.11 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.54 Total: 5.10 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -4.07 Total: -27.34 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 1.43 Total: -40.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.10 -10.01 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.275 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds