Wall clock time and date at job start Mon Mar 30 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.39872 * 126.04056 * 90.02389 * 10 9 7 12 12 C 1.50695 * 125.89532 * 359.95888 * 11 10 9 13 13 C 1.53783 * 113.61120 * 219.13280 * 12 11 10 14 14 C 1.53956 * 87.01924 * 220.04951 * 13 12 11 15 15 C 1.53779 * 87.11133 * 25.36413 * 14 13 12 16 16 N 1.30834 * 108.20238 * 179.97438 * 11 10 9 17 17 N 1.40085 * 108.20803 * 0.02562 * 16 11 10 18 18 H 0.96998 * 126.04217 * 180.02562 * 17 16 11 19 19 C 1.34949 * 107.92267 * 359.76029 * 17 16 11 20 20 C 1.50705 * 126.12688 * 180.24009 * 19 17 16 21 21 C 1.53776 * 113.61348 * 37.67437 * 20 19 17 22 22 C 1.53778 * 87.08276 * 220.02103 * 21 20 19 23 23 C 1.53777 * 87.08084 * 25.43041 * 22 21 20 24 24 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 26 26 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 27 27 H 1.09001 * 112.85732 * 350.33051 * 12 11 10 28 28 H 1.09002 * 113.61815 * 334.56874 * 13 12 11 29 29 H 1.08998 * 113.61683 * 105.47577 * 13 12 11 30 30 H 1.09004 * 113.53762 * 270.80882 * 14 13 12 31 31 H 1.09005 * 113.74541 * 139.94696 * 14 13 12 32 32 H 1.09001 * 113.61148 * 220.08940 * 15 14 13 33 33 H 1.08999 * 113.61499 * 89.19004 * 15 14 13 34 34 H 1.08993 * 112.84892 * 168.97817 * 20 19 17 35 35 H 1.09004 * 113.61738 * 334.56172 * 21 20 19 36 36 H 1.09002 * 113.61962 * 105.47145 * 21 20 19 37 37 H 1.09005 * 113.61025 * 270.88664 * 22 21 20 38 38 H 1.08995 * 113.70127 * 139.99335 * 22 21 20 39 39 H 1.09000 * 113.61938 * 220.02359 * 23 22 21 40 40 H 1.09000 * 113.61689 * 89.11535 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0137 -2.6150 -0.0010 11 6 4.2880 -3.3910 -1.1319 12 6 4.1314 -2.9508 -2.5646 13 6 3.5759 -4.0474 -3.4887 14 6 4.5787 -3.5517 -4.5465 15 6 5.4334 -3.0304 -3.3793 16 7 4.7036 -4.5650 -0.7311 17 7 4.7064 -4.5735 0.6698 18 1 4.9696 -5.3161 1.2355 19 6 4.2837 -3.3639 1.0932 20 6 4.1361 -2.9264 2.5278 21 6 5.2411 -3.4638 3.4525 22 6 4.1430 -3.6849 4.5060 23 6 3.1504 -3.7867 3.3359 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 -0.8911 26 1 3.8751 -0.6805 0.8889 27 1 3.6143 -1.9961 -2.6602 28 1 3.7775 -5.0590 -3.1362 29 1 2.5336 -3.8956 -3.7689 30 1 4.1830 -2.7618 -5.1850 31 1 5.0536 -4.3541 -5.1112 32 1 5.8883 -2.0586 -3.5712 33 1 6.1437 -3.7633 -2.9968 34 1 3.9641 -1.8548 2.6279 35 1 5.6971 -4.3878 3.0968 36 1 5.9756 -2.7110 3.7387 37 1 3.9736 -2.8205 5.1482 38 1 4.2540 -4.6131 5.0665 39 1 2.1970 -3.2945 3.5278 40 1 3.0349 -4.7988 2.9481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409438020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:32 Heat of formation + Delta-G solvation = 77.480910 kcal Electronic energy + Delta-G solvation = -19758.686636 eV Core-core repulsion = 16960.828973 eV Total energy + Delta-G solvation = -2797.857663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.39599 -39.67950 -38.79059 -35.39997 -33.22426 -32.16594 -29.25229 -26.85846 -26.50548 -26.47713 -26.29930 -24.21326 -22.00281 -20.47372 -20.21322 -19.51587 -18.87544 -18.16582 -16.66520 -16.28674 -16.22235 -15.91723 -15.59777 -15.02340 -14.83111 -14.32658 -13.73753 -13.47777 -13.43086 -13.31557 -13.30084 -13.19161 -12.88606 -12.54050 -12.35506 -11.98374 -11.84623 -11.58361 -11.50037 -11.45418 -11.41258 -11.27880 -11.21892 -10.89087 -10.70278 -9.94977 -8.99546 -8.21677 -6.23899 0.99429 1.39497 1.40234 1.52461 1.91281 2.06063 2.40539 3.12664 3.62265 3.65660 3.71601 3.79357 3.85850 3.88308 4.03917 4.08548 4.19238 4.29970 4.62652 4.69897 4.72324 4.80715 4.82734 4.86641 4.90945 4.98819 5.06403 5.08067 5.10281 5.11111 5.12117 5.16054 5.28173 5.43321 5.54326 5.62928 5.64471 5.70578 5.85674 6.39852 6.57823 6.81005 6.90549 7.38469 8.95322 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.010220 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.835549 B = 2739.171964 C = 4721.000819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.008 3.992 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.499 4.499 8 H 0.018 0.982 9 C 0.067 3.933 10 C -0.223 4.223 11 C 0.085 3.915 12 C -0.048 4.048 13 C -0.130 4.130 14 C -0.122 4.122 15 C -0.117 4.117 16 N -0.314 5.314 17 N -0.471 5.471 18 H 0.443 0.557 19 C 0.095 3.905 20 C -0.056 4.056 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.136 4.136 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.242 -7.050 2.291 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.188 4.188 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.537 4.537 8 H 0.037 0.963 9 C 0.029 3.971 10 C -0.234 4.234 11 C -0.081 4.081 12 C -0.069 4.069 13 C -0.168 4.168 14 C -0.160 4.160 15 C -0.156 4.156 16 N -0.137 5.137 17 N -0.181 5.181 18 H 0.289 0.711 19 C -0.033 4.033 20 C -0.076 4.076 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.174 4.174 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.508 -8.100 1.929 15.868 hybrid contribution -0.832 1.218 0.505 1.559 sum 12.676 -6.882 2.433 14.627 Atomic orbital electron populations 1.70075 1.08244 1.27862 1.53198 1.25900 0.95463 1.02976 0.94441 0.85766 0.79651 0.78641 0.79321 1.19167 1.21071 1.16841 1.21134 0.91025 0.92223 1.49364 0.96310 1.17837 0.93531 0.89390 0.96371 1.20142 1.11286 1.00046 0.91941 1.22150 0.97963 0.91208 0.96740 1.21113 0.99992 0.99659 0.86088 1.22931 0.99287 0.97987 0.96590 1.22786 0.96329 1.01284 0.95567 1.22873 0.94956 1.01938 0.95802 1.76944 1.26990 1.20545 0.89270 1.45844 1.55074 1.12290 1.04873 0.71062 1.20720 0.99427 0.86605 0.96538 1.21344 0.99658 1.00794 0.85846 1.22969 0.96121 1.01573 0.95377 1.22771 0.94249 1.03464 0.95479 1.22967 0.97909 0.99366 0.97174 0.92687 0.96165 0.95743 0.89120 0.90283 0.92212 0.89067 0.89536 0.90456 0.90198 0.88407 0.89364 0.89867 0.89184 0.89110 0.92547 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 2 C 0.01 0.49 5.47 84.66 0.46 0.95 16 3 Si 0.94 44.15 27.47 68.60 1.88 46.04 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.24 -10.60 6.54 99.48 0.65 -9.94 16 7 C -0.50 -29.27 9.65 25.60 0.25 -29.02 16 8 H 0.02 1.25 7.98 -2.91 -0.02 1.23 16 9 C 0.07 3.28 3.95 29.10 0.12 3.40 16 10 C -0.22 -9.92 5.29 -20.14 -0.11 -10.03 16 11 C 0.08 3.49 6.27 43.10 0.27 3.76 16 12 C -0.05 -1.76 4.04 -11.01 -0.04 -1.81 16 13 C -0.13 -4.14 7.63 31.18 0.24 -3.91 16 14 C -0.12 -3.03 8.09 31.18 0.25 -2.78 16 15 C -0.12 -3.34 7.63 31.12 0.24 -3.10 16 16 N -0.31 -11.92 12.32 -47.39 -0.58 -12.50 16 17 N -0.47 -15.57 7.16 -48.00 -0.34 -15.92 16 18 H 0.44 11.07 8.32 -213.33 -1.78 9.29 16 19 C 0.10 3.55 6.25 41.41 0.26 3.81 16 20 C -0.06 -1.77 4.05 -11.01 -0.04 -1.81 16 21 C -0.12 -2.66 7.62 31.12 0.24 -2.42 16 22 C -0.12 -2.46 8.08 31.12 0.25 -2.20 16 23 C -0.14 -3.84 7.63 31.12 0.24 -3.60 16 24 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 25 H 0.02 0.97 6.93 -2.39 -0.02 0.95 16 26 H 0.02 1.16 6.19 -2.39 -0.01 1.15 16 27 H 0.09 3.69 7.36 -2.39 -0.02 3.67 16 28 H 0.08 2.57 7.79 -2.39 -0.02 2.55 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 34 H 0.10 3.48 7.04 -2.39 -0.02 3.46 16 35 H 0.09 1.64 7.30 -2.38 -0.02 1.63 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.70 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 Total: -1.00 -70.37 321.85 3.07 -67.31 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -0.80 Total: 23.70 kcal Atomic # 6 Polarization: -51.36 SS G_CDS: 2.61 Total: -48.75 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -0.63 Total: -88.29 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -70.37 3.07 -67.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.788 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds