Wall clock time and date at job start Mon Mar 30 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.39861 * 126.04012 * 90.02662 * 10 9 7 12 12 C 1.50697 * 125.90067 * 359.97438 * 11 10 9 13 13 C 1.53004 * 117.49763 * 188.62260 * 12 11 10 14 14 C 1.53001 * 60.00157 * 252.51350 * 13 12 11 15 15 N 1.30843 * 108.20190 * 179.97438 * 11 10 9 16 16 N 1.40086 * 108.20327 * 359.97438 * 15 11 10 17 17 H 0.96998 * 126.03542 * 180.02562 * 16 15 11 18 18 C 1.34950 * 107.92660 * 359.75963 * 16 15 11 19 19 C 1.50692 * 126.12751 * 180.23725 * 18 16 15 20 20 C 1.54273 * 110.03170 * 58.08457 * 19 18 16 21 21 C 1.54967 * 104.16127 * 217.13608 * 20 19 18 22 22 C 1.54891 * 102.77522 * 37.88962 * 21 20 19 23 23 C 1.53879 * 110.03377 * 300.87032 * 19 18 16 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.08996 * 115.55241 * 334.33870 * 12 11 10 28 28 H 1.08992 * 117.50361 * 0.02562 * 13 12 11 29 29 H 1.09007 * 117.49454 * 145.02540 * 13 12 11 30 30 H 1.08997 * 117.50323 * 252.51179 * 14 13 12 31 31 H 1.08996 * 117.51534 * 107.48031 * 14 13 12 32 32 H 1.08998 * 110.01834 * 179.47958 * 19 18 16 33 33 H 1.08994 * 110.48577 * 335.78563 * 20 19 18 34 34 H 1.09008 * 110.48346 * 98.42761 * 20 19 18 35 35 H 1.09003 * 110.71656 * 279.57297 * 21 20 19 36 36 H 1.09001 * 110.92049 * 156.30081 * 21 20 19 37 37 H 1.08998 * 110.48224 * 203.40733 * 22 21 20 38 38 H 1.09000 * 110.59940 * 80.81798 * 22 21 20 39 39 H 1.09003 * 110.03239 * 238.56844 * 23 19 18 40 40 H 1.08998 * 110.03135 * 359.94854 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.7644 -4.2755 1.1178 12 6 2.4606 -3.9269 2.5521 13 6 3.3015 -4.6032 3.6368 14 6 1.8437 -5.0185 3.4289 15 7 3.5736 -5.2206 0.7129 16 7 3.5792 -5.2214 -0.6880 17 1 4.0909 -5.8182 -1.2562 18 6 2.7427 -4.2490 -1.1073 19 6 2.4374 -3.8965 -2.5402 20 6 1.8722 -5.1276 -3.2784 21 6 2.4757 -5.0262 -4.7021 22 6 3.9082 -4.5034 -4.4304 23 6 3.7312 -3.4994 -3.2725 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.1423 -2.8995 2.7289 28 1 4.0746 -5.2998 3.3131 29 1 3.5367 -4.0205 4.5276 30 1 1.1198 -4.7091 4.1828 31 1 1.6572 -5.9885 2.9683 32 1 1.7203 -3.0765 -2.5781 33 1 2.1969 -6.0469 -2.7911 34 1 0.7839 -5.0808 -3.3203 35 1 1.9140 -4.3164 -5.3094 36 1 2.5060 -6.0042 -5.1825 37 1 4.3049 -4.0017 -5.3130 38 1 4.5641 -5.3204 -4.1300 39 1 3.6416 -2.4870 -3.6666 40 1 4.5798 -3.5608 -2.5912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409441617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:28 Heat of formation + Delta-G solvation = 66.780665 kcal Electronic energy + Delta-G solvation = -19708.425503 eV Core-core repulsion = 16910.103842 eV Total energy + Delta-G solvation = -2798.321661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77936 -37.73507 -36.36323 -33.36237 -31.05891 -30.87389 -28.53550 -27.94212 -26.09413 -23.45672 -22.77513 -21.94866 -20.62512 -20.50181 -18.58936 -18.28307 -16.57839 -16.16204 -15.68610 -14.99191 -14.58635 -14.40249 -13.95171 -13.83233 -13.21347 -13.15202 -12.31528 -11.88436 -11.61913 -11.42209 -11.25535 -11.13429 -11.01126 -10.94458 -10.87454 -10.77935 -10.57487 -10.50679 -10.33832 -10.19382 -10.11268 -9.80272 -9.42375 -9.27614 -8.36985 -8.32500 -7.32980 -5.94073 -3.96398 2.53360 3.32813 3.40063 3.43178 3.49199 3.53108 4.46922 4.53947 4.76621 4.83451 4.84462 5.09861 5.31465 5.39497 5.44245 5.49330 5.57710 5.68885 5.71262 5.74539 5.76980 5.88072 5.98585 5.99985 6.09283 6.19022 6.19188 6.37460 6.41419 6.49006 6.52249 6.60637 6.67178 6.76921 7.04891 7.49698 7.72051 7.83911 8.00377 8.04458 8.47152 8.49907 9.09472 9.66757 11.14817 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.011538 B = 0.009104 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.185038 B = 3074.983245 C = 4881.780441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.500 4.500 8 H 0.053 0.947 9 C 0.087 3.913 10 C -0.170 4.170 11 C 0.107 3.893 12 C -0.065 4.065 13 C -0.174 4.174 14 C -0.168 4.168 15 N -0.313 5.313 16 N -0.487 5.487 17 H 0.426 0.574 18 C 0.072 3.928 19 C -0.024 4.024 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.117 4.117 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.023 0.977 27 H 0.131 0.869 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.838 -10.043 -4.137 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.049 3.951 10 C -0.180 4.180 11 C -0.058 4.058 12 C -0.085 4.085 13 C -0.211 4.211 14 C -0.207 4.207 15 N -0.136 5.136 16 N -0.196 5.196 17 H 0.268 0.732 18 C -0.053 4.053 19 C -0.044 4.044 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.156 4.156 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.149 0.851 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.474 -10.821 -3.773 12.701 hybrid contribution 0.262 1.346 -0.562 1.482 sum 5.736 -9.475 -4.335 11.895 Atomic orbital electron populations 1.69967 1.05879 1.26338 1.51355 1.24976 0.94768 0.98886 0.95670 0.86620 0.80245 0.84158 0.77529 1.19844 1.21143 1.21078 1.21173 0.92932 0.90151 1.49617 0.92857 1.17645 0.91552 0.88292 0.97612 1.20483 1.05816 1.02383 0.89352 1.21152 0.95749 0.94144 0.94739 1.20327 1.04239 0.98666 0.85252 1.22917 0.94325 1.03872 0.99996 1.22921 0.96037 0.99203 1.02509 1.76995 1.24285 1.23749 0.88597 1.45851 1.38554 1.30181 1.04998 0.73231 1.20550 0.95937 0.92900 0.95952 1.20434 0.98005 0.98633 0.87365 1.22471 1.00740 0.97468 0.94918 1.22516 0.96075 1.00692 0.96904 1.22395 0.96887 0.98604 0.98389 1.22207 0.97210 0.99637 0.96499 0.93140 0.95577 0.95928 0.85133 0.88589 0.88913 0.88621 0.89210 0.87365 0.92215 0.91101 0.91209 0.91920 0.91787 0.92242 0.90904 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.50 -13.80 9.09 -34.44 -0.31 -14.12 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.09 2.22 4.93 -29.03 -0.14 2.08 16 10 C -0.17 -3.80 5.29 -105.06 -0.56 -4.35 16 11 C 0.11 2.25 6.75 -82.41 -0.56 1.70 16 12 C -0.06 -1.22 5.90 -91.77 -0.54 -1.76 16 13 C -0.17 -2.69 10.14 -26.73 -0.27 -2.97 16 14 C -0.17 -2.62 10.23 -26.73 -0.27 -2.89 16 15 N -0.31 -6.16 12.28 33.67 0.41 -5.75 16 16 N -0.49 -8.48 7.17 33.47 0.24 -8.24 16 17 H 0.43 5.97 8.96 -182.61 -1.64 4.33 16 18 C 0.07 1.38 5.41 -82.27 -0.45 0.93 16 19 C -0.02 -0.40 3.30 -90.65 -0.30 -0.70 16 20 C -0.12 -1.57 6.36 -25.03 -0.16 -1.73 16 21 C -0.12 -1.38 6.91 -24.70 -0.17 -1.55 16 22 C -0.13 -1.41 6.83 -25.07 -0.17 -1.58 16 23 C -0.12 -1.70 6.45 -25.61 -0.17 -1.86 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.03 0.71 7.97 -51.93 -0.41 0.29 16 26 H 0.02 0.60 7.13 -51.93 -0.37 0.23 16 27 H 0.13 2.62 8.14 -51.93 -0.42 2.20 16 28 H 0.10 1.52 7.89 -51.93 -0.41 1.11 16 29 H 0.09 1.26 8.14 -51.92 -0.42 0.83 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.11 2.05 6.83 -51.93 -0.35 1.70 16 33 H 0.06 0.77 7.70 -51.93 -0.40 0.37 16 34 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.95 7.66 -51.93 -0.40 0.56 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -30.18 328.24 -10.60 -40.78 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.75 Total: 4.44 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -4.16 Total: -27.29 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 1.39 Total: -39.33 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.18 -10.60 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.557 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds