Wall clock time and date at job start Mon Mar 30 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.39861 * 126.04012 * 90.02662 * 10 9 7 12 12 C 1.50697 * 125.90067 * 359.97438 * 11 10 9 13 13 C 1.53004 * 117.49763 * 188.62260 * 12 11 10 14 14 C 1.53001 * 60.00157 * 252.51350 * 13 12 11 15 15 N 1.30843 * 108.20190 * 179.97438 * 11 10 9 16 16 N 1.40086 * 108.20327 * 359.97438 * 15 11 10 17 17 H 0.96998 * 126.03542 * 180.02562 * 16 15 11 18 18 C 1.34950 * 107.92660 * 359.75963 * 16 15 11 19 19 C 1.50692 * 126.12751 * 180.23725 * 18 16 15 20 20 C 1.54273 * 110.03170 * 58.08457 * 19 18 16 21 21 C 1.54967 * 104.16127 * 217.13608 * 20 19 18 22 22 C 1.54891 * 102.77522 * 37.88962 * 21 20 19 23 23 C 1.53879 * 110.03377 * 300.87032 * 19 18 16 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.08996 * 115.55241 * 334.33870 * 12 11 10 28 28 H 1.08992 * 117.50361 * 0.02562 * 13 12 11 29 29 H 1.09007 * 117.49454 * 145.02540 * 13 12 11 30 30 H 1.08997 * 117.50323 * 252.51179 * 14 13 12 31 31 H 1.08996 * 117.51534 * 107.48031 * 14 13 12 32 32 H 1.08998 * 110.01834 * 179.47958 * 19 18 16 33 33 H 1.08994 * 110.48577 * 335.78563 * 20 19 18 34 34 H 1.09008 * 110.48346 * 98.42761 * 20 19 18 35 35 H 1.09003 * 110.71656 * 279.57297 * 21 20 19 36 36 H 1.09001 * 110.92049 * 156.30081 * 21 20 19 37 37 H 1.08998 * 110.48224 * 203.40733 * 22 21 20 38 38 H 1.09000 * 110.59940 * 80.81798 * 22 21 20 39 39 H 1.09003 * 110.03239 * 238.56844 * 23 19 18 40 40 H 1.08998 * 110.03135 * 359.94854 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.7644 -4.2755 1.1178 12 6 2.4606 -3.9269 2.5521 13 6 3.3015 -4.6032 3.6368 14 6 1.8437 -5.0185 3.4289 15 7 3.5736 -5.2206 0.7129 16 7 3.5792 -5.2214 -0.6880 17 1 4.0909 -5.8182 -1.2562 18 6 2.7427 -4.2490 -1.1073 19 6 2.4374 -3.8965 -2.5402 20 6 1.8722 -5.1276 -3.2784 21 6 2.4757 -5.0262 -4.7021 22 6 3.9082 -4.5034 -4.4304 23 6 3.7312 -3.4994 -3.2725 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.1423 -2.8995 2.7289 28 1 4.0746 -5.2998 3.3131 29 1 3.5367 -4.0205 4.5276 30 1 1.1198 -4.7091 4.1828 31 1 1.6572 -5.9885 2.9683 32 1 1.7203 -3.0765 -2.5781 33 1 2.1969 -6.0469 -2.7911 34 1 0.7839 -5.0808 -3.3203 35 1 1.9140 -4.3164 -5.3094 36 1 2.5060 -6.0042 -5.1825 37 1 4.3049 -4.0017 -5.3130 38 1 4.5641 -5.3204 -4.1300 39 1 3.6416 -2.4870 -3.6666 40 1 4.5798 -3.5608 -2.5912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409441617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:27 Heat of formation + Delta-G solvation = 50.796772 kcal Electronic energy + Delta-G solvation = -19709.118616 eV Core-core repulsion = 16910.103842 eV Total energy + Delta-G solvation = -2799.014774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32640 -38.91623 -37.68140 -35.43876 -32.90278 -32.28771 -29.61116 -29.49846 -27.81446 -24.90808 -24.79536 -23.20216 -21.93090 -21.48817 -20.15434 -19.78381 -18.39604 -17.99852 -16.88517 -16.47135 -16.25464 -15.80013 -15.50549 -15.10502 -14.54589 -14.32728 -14.24334 -13.78377 -13.37838 -12.88620 -12.75461 -12.59944 -12.48818 -12.33843 -12.08782 -11.99649 -11.96636 -11.89412 -11.72197 -11.53889 -11.48340 -11.44135 -11.39395 -11.00173 -10.51533 -9.83779 -9.03978 -8.09857 -6.21849 0.98548 1.38958 1.40287 1.52504 1.87009 2.05795 2.45883 3.12723 3.18670 3.52913 3.69563 3.76553 3.80437 3.93786 4.13593 4.29678 4.30150 4.48458 4.57243 4.62362 4.65843 4.78014 4.82178 4.86942 4.89931 4.96180 5.02722 5.08920 5.17786 5.23445 5.29440 5.31284 5.34239 5.45386 5.46935 5.50740 5.79284 5.84938 5.88625 6.33610 6.58690 6.89501 6.90598 7.45321 8.97516 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.011538 B = 0.009104 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.185038 B = 3074.983245 C = 4881.780441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.510 4.510 8 H 0.042 0.958 9 C 0.107 3.893 10 C -0.223 4.223 11 C 0.101 3.899 12 C -0.105 4.105 13 C -0.150 4.150 14 C -0.150 4.150 15 N -0.317 5.317 16 N -0.468 5.468 17 H 0.444 0.556 18 C 0.094 3.906 19 C -0.029 4.029 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.116 4.116 24 H 0.263 0.737 25 H -0.003 1.003 26 H -0.001 1.001 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -11.150 -4.895 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.069 3.931 10 C -0.233 4.233 11 C -0.064 4.064 12 C -0.125 4.125 13 C -0.187 4.187 14 C -0.188 4.188 15 N -0.141 5.141 16 N -0.179 5.179 17 H 0.290 0.710 18 C -0.034 4.034 19 C -0.049 4.049 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.154 4.154 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.017 0.983 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.103 -11.959 -4.537 14.630 hybrid contribution -0.262 1.669 -0.335 1.722 sum 6.841 -10.290 -4.872 13.282 Atomic orbital electron populations 1.70079 1.07332 1.27423 1.52022 1.25764 0.95603 1.02355 0.95135 0.85584 0.78883 0.79795 0.77925 1.19547 1.20183 1.20322 1.21343 0.92415 0.91488 1.49608 0.93983 1.17232 0.91531 0.89433 0.94931 1.20336 1.07839 1.03504 0.91641 1.21394 0.95513 0.94050 0.95435 1.20290 1.08198 0.98570 0.85477 1.22986 0.94128 1.02696 0.98892 1.23004 0.96792 0.97732 1.01312 1.76942 1.24115 1.23567 0.89463 1.45790 1.37758 1.29639 1.04665 0.71020 1.20778 0.94344 0.91779 0.96472 1.20503 0.98640 0.99214 0.86576 1.22449 1.00500 0.95877 0.96305 1.22505 0.95502 1.02220 0.95141 1.22377 0.97432 0.98144 0.97363 1.22188 0.95380 1.00396 0.97452 0.92825 0.98466 0.98272 0.87639 0.88612 0.86607 0.86603 0.89184 0.90913 0.91326 0.91641 0.91135 0.89255 0.90116 0.90480 0.91864 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.51 -29.49 9.09 25.60 0.23 -29.26 16 8 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 9 C 0.11 5.84 4.93 29.10 0.14 5.98 16 10 C -0.22 -10.41 5.29 -20.15 -0.11 -10.51 16 11 C 0.10 4.33 6.75 43.10 0.29 4.63 16 12 C -0.11 -4.05 5.90 -11.54 -0.07 -4.11 16 13 C -0.15 -4.46 10.14 30.60 0.31 -4.15 16 14 C -0.15 -4.55 10.23 30.60 0.31 -4.23 16 15 N -0.32 -12.34 12.28 -47.39 -0.58 -12.93 16 16 N -0.47 -15.89 7.17 -48.01 -0.34 -16.24 16 17 H 0.44 11.47 8.96 -213.33 -1.91 9.56 16 18 C 0.09 3.64 5.41 41.40 0.22 3.87 16 19 C -0.03 -0.96 3.30 -10.81 -0.04 -0.99 16 20 C -0.11 -2.88 6.36 31.70 0.20 -2.68 16 21 C -0.12 -2.23 6.91 31.91 0.22 -2.01 16 22 C -0.12 -2.25 6.83 31.67 0.22 -2.04 16 23 C -0.12 -3.26 6.45 31.32 0.20 -3.06 16 24 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 25 H 0.00 -0.17 7.97 -2.38 -0.02 -0.19 16 26 H 0.00 -0.05 7.13 -2.39 -0.02 -0.07 16 27 H 0.11 4.52 8.14 -2.39 -0.02 4.50 16 28 H 0.10 2.87 7.89 -2.39 -0.02 2.85 16 29 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.95 6.83 -2.39 -0.02 2.93 16 33 H 0.07 1.62 7.70 -2.39 -0.02 1.60 16 34 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 Total: -1.00 -67.57 328.24 3.11 -64.47 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.89 Total: 20.93 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 2.61 Total: -47.59 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -0.64 Total: -84.70 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.57 3.11 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.266 kcal (2) G-P(sol) polarization free energy of solvation -67.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds