Wall clock time and date at job start Mon Mar 30 2020 06:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99779 * 2 1 4 4 N 1.46899 * 109.47053 * 124.31058 * 3 2 1 5 5 C 1.46898 * 110.99648 * 303.47537 * 4 3 2 6 6 C 1.50708 * 109.46953 * 293.94979 * 5 4 3 7 7 H 1.07991 * 119.99632 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99966 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99939 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99963 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47201 * 60.00120 * 10 8 6 12 12 H 1.48503 * 109.47106 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46873 * 299.99972 * 10 8 6 14 14 C 1.46901 * 111.00219 * 67.42592 * 4 3 2 15 15 C 1.50697 * 109.47335 * 73.98221 * 14 4 3 16 16 C 1.38671 * 120.41832 * 256.35741 * 15 14 4 17 17 C 1.38633 * 118.41965 * 179.77881 * 16 15 14 18 18 C 1.38221 * 119.15821 * 0.47128 * 17 16 15 19 19 C 1.50707 * 119.61913 * 179.74614 * 18 17 16 20 20 N 1.31851 * 120.77002 * 359.76685 * 18 17 16 21 21 C 1.31886 * 121.72179 * 0.02562 * 20 18 17 22 22 C 1.50699 * 119.61923 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00063 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.00333 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99767 * 180.02562 * 2 1 3 26 26 H 1.08991 * 109.47341 * 4.30460 * 3 2 1 27 27 H 1.09008 * 109.47082 * 244.30520 * 3 2 1 28 28 H 1.08999 * 109.47666 * 53.95209 * 5 4 3 29 29 H 1.09002 * 109.47141 * 173.95869 * 5 4 3 30 30 H 0.97001 * 119.99824 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47003 * 193.98630 * 14 4 3 32 32 H 1.09000 * 109.46968 * 313.98449 * 14 4 3 33 33 H 1.07999 * 120.79454 * 0.02562 * 16 15 14 34 34 H 1.07996 * 120.42065 * 180.21845 * 17 16 15 35 35 H 1.08996 * 109.46929 * 270.02540 * 19 18 17 36 36 H 1.09000 * 109.46809 * 30.02259 * 19 18 17 37 37 H 1.08993 * 109.47409 * 150.01960 * 19 18 17 38 38 H 1.08997 * 109.47110 * 269.97330 * 22 21 20 39 39 H 1.09000 * 109.47141 * 29.97938 * 22 21 20 40 40 H 1.09005 * 109.47495 * 149.97765 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9844 1.3389 1.1440 5 6 2.2625 1.1347 2.4070 6 6 1.3416 2.3019 2.6536 7 1 1.2967 3.1138 1.9429 8 6 0.5563 2.3330 3.7865 9 7 0.6114 1.3445 4.6521 10 14 -0.5857 3.7794 4.0918 11 1 -1.5607 3.8843 2.9765 12 1 -1.3145 3.5736 5.3692 13 1 0.2105 5.0303 4.1726 14 6 4.0578 0.3487 0.9851 15 6 5.0359 0.8306 -0.0552 16 6 5.0293 0.2863 -1.3306 17 6 5.9440 0.7636 -2.2564 18 6 6.8325 1.7522 -1.8772 19 6 7.8352 2.2747 -2.8737 20 7 6.8133 2.2433 -0.6537 21 6 5.9546 1.8161 0.2515 22 6 5.9749 2.4104 1.6363 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8499 -0.9353 -0.0004 26 1 1.3577 2.1321 0.0771 27 1 2.6310 1.3971 -0.9261 28 1 1.6778 0.2168 2.3471 29 1 2.9778 1.0571 3.2258 30 1 0.0592 1.3666 5.4493 31 1 4.5742 0.2170 1.9360 32 1 3.6305 -0.6028 0.6689 33 1 4.3255 -0.4883 -1.5975 34 1 5.9650 0.3652 -3.2600 35 1 8.7482 1.6822 -2.8151 36 1 7.4196 2.2033 -3.8788 37 1 8.0629 3.3164 -2.6479 38 1 6.6512 1.8352 2.2686 39 1 6.3176 3.4437 1.5832 40 1 4.9704 2.3820 2.0587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428853374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:03 Heat of formation + Delta-G solvation = 51.292808 kcal Electronic energy + Delta-G solvation = -19519.217401 eV Core-core repulsion = 16720.224137 eV Total energy + Delta-G solvation = -2798.993264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24940 -37.41838 -33.88847 -32.83579 -32.67872 -31.66315 -29.07587 -27.93109 -26.65678 -25.35237 -23.35294 -22.17571 -21.17617 -20.70806 -18.79657 -16.50053 -16.26052 -15.59560 -15.19099 -14.77709 -14.54945 -14.35370 -14.17387 -13.72488 -13.14769 -12.97344 -12.88974 -12.31572 -12.20276 -12.16130 -11.74914 -11.70453 -11.55883 -11.32393 -11.03146 -10.87106 -10.74411 -10.58574 -10.48124 -9.90972 -9.48411 -9.31266 -9.12526 -8.72415 -8.41921 -8.33339 -7.27426 -6.01793 -4.02335 1.34341 1.52521 2.90708 3.33454 3.37872 3.40762 3.94081 4.42661 4.44585 4.85667 4.98864 5.08743 5.24306 5.29738 5.35655 5.51657 5.53476 5.56849 5.58689 5.70257 5.81841 5.98251 6.00873 6.03993 6.06191 6.14385 6.23140 6.39314 6.42751 6.58864 6.64438 6.70195 7.03712 7.15842 7.24124 7.33911 7.43105 7.78844 8.05050 8.17600 8.29108 8.52523 9.04105 9.61408 11.08996 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024853 B = 0.005350 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.343702 B = 5232.744146 C = 5781.609767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.180 4.180 3 C 0.092 3.908 4 N -0.523 5.523 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.061 0.939 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.090 3.910 15 C -0.118 4.118 16 C -0.070 4.070 17 C -0.185 4.185 18 C 0.117 3.883 19 C -0.099 4.099 20 N -0.491 5.491 21 C 0.158 3.842 22 C -0.112 4.112 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.001 0.999 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 -2.691 -12.238 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.199 4.199 3 C -0.036 4.036 4 N -0.245 5.245 5 C 0.067 3.933 6 C -0.541 4.541 7 H 0.079 0.921 8 C -0.143 4.143 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.039 4.039 15 C -0.121 4.121 16 C -0.096 4.096 17 C -0.205 4.205 18 C -0.021 4.021 19 C -0.157 4.157 20 N -0.201 5.201 21 C 0.020 3.980 22 C -0.169 4.169 23 H 0.115 0.885 24 H 0.102 0.898 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.019 0.981 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.800 -1.616 -11.789 15.415 hybrid contribution -1.750 -0.919 -0.012 1.976 sum 8.050 -2.535 -11.801 14.508 Atomic orbital electron populations 1.23667 0.96015 1.01077 1.00573 1.23458 0.96693 0.99548 1.00240 1.21210 0.94555 0.94481 0.93347 1.62407 1.11476 1.46400 1.04229 1.19790 0.92645 0.96573 0.84251 1.21045 1.21710 1.05209 1.06137 0.92129 1.24927 0.97206 0.96110 0.96064 1.69941 1.40642 1.31562 1.11625 0.86629 0.80863 0.83000 0.77324 1.20372 1.21429 1.20196 1.20969 0.92418 0.93836 0.96646 1.20783 0.97913 0.97695 0.95663 1.21476 0.97094 0.98414 0.92627 1.21787 0.98199 0.99952 1.00569 1.21149 0.95570 0.93307 0.92108 1.20646 0.96945 1.02026 0.96049 1.67367 1.23423 1.27656 1.01686 1.21151 0.89522 0.91609 0.95717 1.20874 1.05052 1.00519 0.90446 0.88491 0.89764 0.88842 0.89821 0.92435 0.98148 0.95399 0.92956 0.90160 0.94441 0.85420 0.85528 0.90911 0.91138 0.90752 0.91299 0.91171 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 14.32 29.01 0.42 -2.67 16 2 C -0.18 -3.21 7.39 -36.02 -0.27 -3.48 16 3 C 0.09 1.74 5.46 -4.97 -0.03 1.71 16 4 N -0.52 -10.61 3.72 -238.96 -0.89 -11.50 16 5 C 0.19 4.73 4.48 -4.97 -0.02 4.70 16 6 C -0.50 -13.56 8.56 -34.44 -0.29 -13.85 16 7 H 0.06 1.64 7.10 -52.49 -0.37 1.27 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 10 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.09 1.56 4.16 -4.98 -0.02 1.54 16 15 C -0.12 -1.90 4.79 -104.48 -0.50 -2.40 16 16 C -0.07 -0.98 9.09 -39.28 -0.36 -1.34 16 17 C -0.19 -2.37 9.74 -39.44 -0.38 -2.76 16 18 C 0.12 1.62 6.78 -82.59 -0.56 1.06 16 19 C -0.10 -1.00 10.17 36.01 0.37 -0.63 16 20 N -0.49 -8.04 10.19 -5.74 -0.06 -8.10 16 21 C 0.16 2.64 6.78 -82.59 -0.56 2.08 16 22 C -0.11 -1.79 9.48 36.01 0.34 -1.45 16 23 H 0.10 1.76 7.84 -52.48 -0.41 1.34 16 24 H 0.08 1.33 8.06 -52.49 -0.42 0.91 16 25 H 0.09 1.56 6.84 -52.49 -0.36 1.21 16 26 H 0.08 1.73 6.61 -51.93 -0.34 1.39 16 27 H 0.06 1.00 6.82 -51.92 -0.35 0.65 16 28 H 0.00 0.02 6.77 -51.93 -0.35 -0.33 16 29 H 0.03 0.74 7.84 -51.93 -0.41 0.33 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.08 1.40 7.11 -51.93 -0.37 1.03 16 32 H 0.04 0.62 6.18 -51.93 -0.32 0.30 16 33 H 0.13 1.56 8.05 -52.49 -0.42 1.14 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.90 6.19 -51.93 -0.32 1.58 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -29.55 327.12 -8.39 -37.95 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.12 Total: 1.66 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.97 Total: -15.96 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.21 Total: -44.94 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.55 -8.39 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.240 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds