Wall clock time and date at job start Mon Mar 30 2020 06:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99779 * 2 1 4 4 N 1.46899 * 109.47053 * 124.31058 * 3 2 1 5 5 C 1.46898 * 110.99648 * 303.47537 * 4 3 2 6 6 C 1.50708 * 109.46953 * 293.94979 * 5 4 3 7 7 H 1.07991 * 119.99632 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99966 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99939 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99963 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47201 * 60.00120 * 10 8 6 12 12 H 1.48503 * 109.47106 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46873 * 299.99972 * 10 8 6 14 14 C 1.46901 * 111.00219 * 67.42592 * 4 3 2 15 15 C 1.50697 * 109.47335 * 73.98221 * 14 4 3 16 16 C 1.38671 * 120.41832 * 256.35741 * 15 14 4 17 17 C 1.38633 * 118.41965 * 179.77881 * 16 15 14 18 18 C 1.38221 * 119.15821 * 0.47128 * 17 16 15 19 19 C 1.50707 * 119.61913 * 179.74614 * 18 17 16 20 20 N 1.31851 * 120.77002 * 359.76685 * 18 17 16 21 21 C 1.31886 * 121.72179 * 0.02562 * 20 18 17 22 22 C 1.50699 * 119.61923 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00063 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.00333 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99767 * 180.02562 * 2 1 3 26 26 H 1.08991 * 109.47341 * 4.30460 * 3 2 1 27 27 H 1.09008 * 109.47082 * 244.30520 * 3 2 1 28 28 H 1.08999 * 109.47666 * 53.95209 * 5 4 3 29 29 H 1.09002 * 109.47141 * 173.95869 * 5 4 3 30 30 H 0.97001 * 119.99824 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47003 * 193.98630 * 14 4 3 32 32 H 1.09000 * 109.46968 * 313.98449 * 14 4 3 33 33 H 1.07999 * 120.79454 * 0.02562 * 16 15 14 34 34 H 1.07996 * 120.42065 * 180.21845 * 17 16 15 35 35 H 1.08996 * 109.46929 * 270.02540 * 19 18 17 36 36 H 1.09000 * 109.46809 * 30.02259 * 19 18 17 37 37 H 1.08993 * 109.47409 * 150.01960 * 19 18 17 38 38 H 1.08997 * 109.47110 * 269.97330 * 22 21 20 39 39 H 1.09000 * 109.47141 * 29.97938 * 22 21 20 40 40 H 1.09005 * 109.47495 * 149.97765 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9844 1.3389 1.1440 5 6 2.2625 1.1347 2.4070 6 6 1.3416 2.3019 2.6536 7 1 1.2967 3.1138 1.9429 8 6 0.5563 2.3330 3.7865 9 7 0.6114 1.3445 4.6521 10 14 -0.5857 3.7794 4.0918 11 1 -1.5607 3.8843 2.9765 12 1 -1.3145 3.5736 5.3692 13 1 0.2105 5.0303 4.1726 14 6 4.0578 0.3487 0.9851 15 6 5.0359 0.8306 -0.0552 16 6 5.0293 0.2863 -1.3306 17 6 5.9440 0.7636 -2.2564 18 6 6.8325 1.7522 -1.8772 19 6 7.8352 2.2747 -2.8737 20 7 6.8133 2.2433 -0.6537 21 6 5.9546 1.8161 0.2515 22 6 5.9749 2.4104 1.6363 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8499 -0.9353 -0.0004 26 1 1.3577 2.1321 0.0771 27 1 2.6310 1.3971 -0.9261 28 1 1.6778 0.2168 2.3471 29 1 2.9778 1.0571 3.2258 30 1 0.0592 1.3666 5.4493 31 1 4.5742 0.2170 1.9360 32 1 3.6305 -0.6028 0.6689 33 1 4.3255 -0.4883 -1.5975 34 1 5.9650 0.3652 -3.2600 35 1 8.7482 1.6822 -2.8151 36 1 7.4196 2.2033 -3.8788 37 1 8.0629 3.3164 -2.6479 38 1 6.6512 1.8352 2.2686 39 1 6.3176 3.4437 1.5832 40 1 4.9704 2.3820 2.0587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428853374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:02 Heat of formation + Delta-G solvation = 34.500037 kcal Electronic energy + Delta-G solvation = -19519.945590 eV Core-core repulsion = 16720.224137 eV Total energy + Delta-G solvation = -2799.721454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40553 -38.96128 -35.15011 -34.74631 -33.87305 -33.15281 -30.23033 -29.47328 -28.24562 -26.78582 -24.95974 -23.31616 -22.76005 -21.98669 -20.28722 -18.32404 -17.67103 -17.01077 -16.60932 -16.21794 -16.04548 -15.74173 -15.51233 -15.18728 -14.54234 -14.08074 -13.98670 -13.96496 -13.67608 -13.25595 -13.12641 -12.95377 -12.85533 -12.84644 -12.71070 -12.56776 -12.30402 -12.22956 -12.09206 -11.79471 -11.24901 -10.64068 -10.54819 -10.32174 -10.15264 -9.49128 -8.91955 -8.14528 -6.21971 0.21770 0.41330 1.41911 1.43770 1.48344 1.51294 2.42864 2.80011 3.19099 3.37478 3.51702 3.86336 3.92521 4.04298 4.09140 4.14031 4.33416 4.45323 4.53955 4.69520 4.71887 4.74723 4.77914 4.83931 4.86199 4.93884 4.98388 5.10590 5.19480 5.26260 5.28231 5.35983 5.43459 5.49401 5.68975 5.74848 5.91205 5.94059 6.12174 6.39693 6.66106 6.92814 7.16208 7.46419 8.95801 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024853 B = 0.005350 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.343702 B = 5232.744146 C = 5781.609767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.186 4.186 3 C 0.097 3.903 4 N -0.528 5.528 5 C 0.212 3.788 6 C -0.511 4.511 7 H 0.056 0.944 8 C 0.009 3.991 9 N -0.931 5.931 10 Si 0.956 3.044 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.097 3.903 15 C -0.134 4.134 16 C -0.069 4.069 17 C -0.177 4.177 18 C 0.107 3.893 19 C -0.097 4.097 20 N -0.515 5.515 21 C 0.137 3.863 22 C -0.105 4.105 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.060 0.940 27 H 0.076 0.924 28 H -0.021 1.021 29 H 0.001 0.999 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.417 -2.911 -14.535 17.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.205 4.205 3 C -0.031 4.031 4 N -0.250 5.250 5 C 0.086 3.914 6 C -0.550 4.550 7 H 0.074 0.926 8 C -0.189 4.189 9 N -0.572 5.572 10 Si 0.781 3.219 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.197 1.197 14 C -0.031 4.031 15 C -0.137 4.137 16 C -0.095 4.095 17 C -0.197 4.197 18 C -0.031 4.031 19 C -0.154 4.154 20 N -0.226 5.226 21 C 0.000 4.000 22 C -0.163 4.163 23 H 0.105 0.895 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.079 0.921 27 H 0.094 0.906 28 H -0.003 1.003 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.168 -1.831 -14.105 17.484 hybrid contribution -1.775 -0.867 0.605 2.066 sum 8.394 -2.698 -13.499 16.124 Atomic orbital electron populations 1.23816 0.96134 1.01632 1.00045 1.23484 0.96868 0.99495 1.00661 1.21130 0.94221 0.94413 0.93340 1.62266 1.11787 1.47977 1.02989 1.19370 0.91553 0.94815 0.85691 1.21320 1.22001 1.05643 1.06011 0.92615 1.25704 0.98727 0.98574 0.95872 1.70059 1.41643 1.33395 1.12118 0.85644 0.79009 0.79840 0.77375 1.19488 1.21053 1.19749 1.20883 0.91645 0.93507 0.97041 1.20625 0.97996 0.98707 0.96373 1.21755 0.97584 0.98428 0.91757 1.22188 0.96714 0.98884 1.01890 1.21879 0.96227 0.93173 0.91786 1.20754 0.96734 1.01705 0.96208 1.67385 1.23818 1.28578 1.02818 1.21176 0.90481 0.92407 0.95945 1.20744 1.03645 1.00815 0.91048 0.89493 0.87743 0.87320 0.92119 0.90573 1.00282 0.98044 0.92934 0.91207 0.93399 0.83368 0.81765 0.89382 0.88471 0.91324 0.90209 0.91222 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.13 14.32 67.78 0.97 -5.16 16 2 C -0.19 -6.46 7.39 25.65 0.19 -6.27 16 3 C 0.10 3.63 5.46 85.56 0.47 4.10 16 4 N -0.53 -21.81 3.72 -909.93 -3.39 -25.20 16 5 C 0.21 10.76 4.48 85.56 0.38 11.14 16 6 C -0.51 -28.20 8.56 25.60 0.22 -27.98 16 7 H 0.06 3.07 7.10 -2.92 -0.02 3.05 16 8 C 0.01 0.52 5.46 84.65 0.46 0.98 16 9 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 10 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 C 0.10 3.39 4.16 85.56 0.36 3.75 16 15 C -0.13 -4.21 4.79 -19.77 -0.09 -4.31 16 16 C -0.07 -1.75 9.09 22.47 0.20 -1.55 16 17 C -0.18 -3.91 9.74 22.36 0.22 -3.69 16 18 C 0.11 2.71 6.78 42.55 0.29 3.00 16 19 C -0.10 -1.63 10.17 71.24 0.72 -0.91 16 20 N -0.51 -16.35 10.19 -172.08 -1.75 -18.11 16 21 C 0.14 4.57 6.78 42.54 0.29 4.86 16 22 C -0.11 -3.48 9.48 71.24 0.67 -2.81 16 23 H 0.09 3.14 7.84 -2.91 -0.02 3.12 16 24 H 0.10 3.13 8.06 -2.91 -0.02 3.11 16 25 H 0.11 3.45 6.84 -2.91 -0.02 3.43 16 26 H 0.06 2.54 6.61 -2.39 -0.02 2.52 16 27 H 0.08 2.56 6.82 -2.38 -0.02 2.54 16 28 H -0.02 -1.12 6.77 -2.39 -0.02 -1.13 16 29 H 0.00 0.08 7.84 -2.39 -0.02 0.06 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 31 H 0.07 2.53 7.11 -2.39 -0.02 2.51 16 32 H 0.05 1.55 6.18 -2.39 -0.01 1.53 16 33 H 0.15 3.09 8.05 -2.91 -0.02 3.07 16 34 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.12 8.08 -2.39 -0.02 1.10 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.08 3.01 6.19 -2.38 -0.01 2.99 16 Total: -1.00 -64.25 327.12 3.53 -60.72 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.01 Total: 16.06 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 5.35 Total: -24.86 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -4.86 Total: -98.11 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -64.25 3.53 -60.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.224 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds