Wall clock time and date at job start Mon Mar 30 2020 07:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31885 * 119.61634 * 2 1 4 4 C 1.31858 * 121.72255 * 179.71018 * 3 2 1 5 5 C 1.38231 * 120.76244 * 0.57308 * 4 3 2 6 6 C 1.38630 * 119.16121 * 359.71807 * 5 4 3 7 7 C 1.38187 * 119.61659 * 180.27866 * 2 1 3 8 8 C 1.50697 * 120.41764 * 0.02562 * 7 2 1 9 9 N 1.46902 * 109.47019 * 79.99933 * 8 7 2 10 10 C 1.46904 * 111.00050 * 179.97438 * 9 8 7 11 11 H 1.09001 * 110.43659 * 327.54426 * 10 9 8 12 12 C 1.54266 * 110.48685 * 90.22964 * 10 9 8 13 13 C 1.53870 * 106.60006 * 142.28766 * 12 10 9 14 14 C 1.54272 * 106.59783 * 0.02562 * 13 12 10 15 15 H 1.08997 * 110.48624 * 95.06826 * 14 13 12 16 16 C 1.50696 * 110.48546 * 217.70963 * 14 13 12 17 17 H 1.08000 * 120.00101 * 114.77564 * 16 14 13 18 18 C 1.37882 * 120.00173 * 294.77938 * 16 14 13 19 19 N 1.31508 * 119.99924 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00088 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47219 * 59.99405 * 20 18 16 22 22 H 1.48500 * 109.47137 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47197 * 299.99939 * 20 18 16 24 24 C 1.54887 * 104.19488 * 336.38724 * 14 13 12 25 25 H 1.09001 * 109.46953 * 269.72222 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71820 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72450 * 1 2 3 28 28 H 1.08000 * 119.61392 * 180.26688 * 4 3 2 29 29 H 1.07996 * 120.41560 * 179.74733 * 5 4 3 30 30 H 1.07998 * 120.78641 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.47337 * 200.00267 * 8 7 2 32 32 H 1.08996 * 109.47323 * 320.00398 * 8 7 2 33 33 H 1.00900 * 110.99683 * 56.04983 * 9 8 7 34 34 H 1.08994 * 110.02966 * 261.57743 * 12 10 9 35 35 H 1.08998 * 110.02702 * 23.00222 * 12 10 9 36 36 H 1.08998 * 110.03129 * 240.71651 * 13 12 10 37 37 H 1.08999 * 110.03307 * 119.28416 * 13 12 10 38 38 H 0.96996 * 119.99928 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.75941 * 279.62476 * 24 14 13 40 40 H 1.09004 * 110.91049 * 156.33016 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0057 5 6 4.2267 0.0340 0.0000 6 6 3.5766 -1.1904 -0.0058 7 6 2.1900 -1.2013 -0.0058 8 6 1.4373 -2.5068 -0.0128 9 7 0.9849 -2.8039 -1.3784 10 6 0.2460 -4.0728 -1.4239 11 1 0.6403 -4.7696 -0.6842 12 6 -1.2596 -3.8295 -1.1920 13 6 -2.0099 -4.8027 -2.1181 14 6 -0.9340 -5.6039 -2.8801 15 1 -0.7329 -6.5486 -2.3750 16 6 -1.3664 -5.8468 -4.3031 17 1 -0.8151 -5.4021 -5.1184 18 6 -2.4659 -6.6367 -4.5643 19 7 -3.1370 -7.1786 -3.5716 20 14 -3.0014 -6.9383 -6.3283 21 1 -1.9000 -7.5985 -7.0740 22 1 -4.2004 -7.8144 -6.3387 23 1 -3.3293 -5.6422 -6.9746 24 6 0.3171 -4.6916 -2.8418 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 3.9753 2.1529 0.0098 29 1 5.3057 0.0803 0.0006 30 1 4.1368 -2.1137 -0.0108 31 1 2.0922 -3.3057 0.3349 32 1 0.5735 -2.4318 0.6478 33 1 1.7617 -2.8150 -2.0223 34 1 -1.5147 -4.0322 -0.1519 35 1 -1.5149 -2.8007 -1.4459 36 1 -2.6294 -4.2461 -2.8214 37 1 -2.6292 -5.4777 -1.5275 38 1 -3.9102 -7.7346 -3.7554 39 1 0.2531 -3.9161 -3.6050 40 1 1.2289 -5.2764 -2.9631 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:38 Heat of formation + Delta-G solvation = 14.661531 kcal Electronic energy + Delta-G solvation = -19032.436205 eV Core-core repulsion = 16231.854489 eV Total energy + Delta-G solvation = -2800.581716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41758 -37.80264 -35.02756 -33.03568 -32.65519 -31.33802 -28.14975 -27.91975 -26.88717 -24.81402 -23.45901 -22.47970 -21.49548 -19.47204 -18.91757 -16.91216 -16.43079 -16.31265 -15.37283 -15.18391 -14.77026 -14.51372 -14.12846 -13.80848 -13.29355 -13.08123 -12.89388 -12.41756 -12.37008 -12.32542 -12.00073 -11.68229 -11.30786 -11.00908 -10.76813 -10.54116 -10.42991 -10.12595 -9.93839 -9.83258 -9.52284 -9.47513 -9.13789 -8.83426 -8.70035 -8.34232 -8.13824 -5.97625 -3.99920 1.01384 1.18981 3.34269 3.38874 3.41611 3.66329 4.26676 4.45269 4.51168 4.69826 4.74004 4.89157 4.93489 5.29194 5.33828 5.46034 5.52090 5.60453 5.65736 5.70458 5.73779 5.80451 5.96543 6.07576 6.20802 6.22525 6.31255 6.52897 6.63586 6.68778 6.79170 6.85812 7.00185 7.16370 7.37469 7.51583 7.62766 7.76446 7.93928 7.94813 8.05748 8.50102 9.02779 9.63807 11.12279 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.003715 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.274666 B = 7535.998371 C = 7635.064577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.154 3.846 3 N -0.490 5.490 4 C 0.097 3.903 5 C -0.184 4.184 6 C -0.070 4.070 7 C -0.131 4.131 8 C 0.101 3.899 9 N -0.676 5.676 10 C 0.079 3.921 11 H 0.041 0.959 12 C -0.114 4.114 13 C -0.097 4.097 14 C 0.052 3.948 15 H 0.028 0.972 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.117 4.117 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.338 0.662 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.259 0.741 39 H 0.065 0.935 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.626 11.819 9.050 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.016 3.984 3 N -0.199 5.199 4 C -0.060 4.060 5 C -0.204 4.204 6 C -0.096 4.096 7 C -0.133 4.133 8 C -0.029 4.029 9 N -0.307 5.307 10 C -0.030 4.030 11 H 0.059 0.941 12 C -0.152 4.152 13 C -0.136 4.136 14 C 0.033 3.967 15 H 0.046 0.954 16 C -0.551 4.551 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.155 4.155 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.169 0.831 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.405 12.851 9.143 18.894 hybrid contribution 1.047 -1.610 -0.812 2.085 sum 11.451 11.241 8.331 18.080 Atomic orbital electron populations 1.20885 0.88498 1.04932 1.02726 1.21220 0.97251 0.87376 0.92593 1.67573 1.09932 1.29516 1.12913 1.22704 0.89645 0.98299 0.95374 1.22052 1.01227 0.93496 1.03661 1.21527 0.93889 0.98436 0.95795 1.20737 0.93966 0.96646 1.01994 1.20849 0.97812 0.91506 0.92685 1.60660 1.29097 1.35550 1.05390 1.22549 0.94673 0.87342 0.98429 0.94102 1.22274 0.93770 1.00518 0.98657 1.22074 0.98623 0.96207 0.96657 1.19367 0.88910 0.92825 0.95603 0.95364 1.21121 1.12086 1.29999 0.91934 0.92773 1.24976 0.96575 0.95660 0.96745 1.69956 1.19244 1.33054 1.30640 0.86720 0.77980 0.78148 0.85500 1.20381 1.21389 1.20275 1.22759 0.99886 0.99130 0.93683 0.90962 0.90844 0.88251 0.83072 0.85087 0.85150 0.94633 0.89784 0.84421 0.94156 0.92064 0.93005 0.92999 0.93084 0.91668 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.43 36.01 0.34 -1.02 16 2 C 0.15 2.00 6.78 -82.59 -0.56 1.44 16 3 N -0.49 -6.49 10.27 -9.47 -0.10 -6.58 16 4 C 0.10 1.03 11.18 -17.54 -0.20 0.84 16 5 C -0.18 -1.75 10.11 -39.44 -0.40 -2.15 16 6 C -0.07 -0.73 9.82 -39.28 -0.39 -1.12 16 7 C -0.13 -1.58 5.41 -104.48 -0.57 -2.14 16 8 C 0.10 1.24 4.81 -4.98 -0.02 1.21 16 9 N -0.68 -9.68 5.64 -106.25 -0.60 -10.28 16 10 C 0.08 1.34 3.19 -66.06 -0.21 1.13 16 11 H 0.04 0.69 7.82 -51.93 -0.41 0.28 16 12 C -0.11 -2.10 6.53 -25.62 -0.17 -2.27 16 13 C -0.10 -2.24 5.60 -25.61 -0.14 -2.38 16 14 C 0.05 1.27 2.72 -90.11 -0.25 1.03 16 15 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.51 -14.05 8.36 -34.44 -0.29 -14.33 16 17 H 0.05 1.47 7.77 -52.49 -0.41 1.06 16 18 C 0.06 1.72 5.35 -17.82 -0.10 1.63 16 19 N -0.89 -25.66 12.63 55.43 0.70 -24.96 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.12 -2.33 5.65 -24.75 -0.14 -2.47 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.29 6.34 -51.93 -0.33 0.96 16 28 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 31 H 0.04 0.41 7.97 -51.93 -0.41 0.00 16 32 H 0.08 1.04 7.29 -51.93 -0.38 0.66 16 33 H 0.34 4.71 8.41 -39.29 -0.33 4.38 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.05 1.28 7.83 -51.93 -0.41 0.88 16 37 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 325.13 15.07 4.90 4.90 Total: -1.00 -29.29 325.13 -9.64 -38.93 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.44 Total: 2.26 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.08 Total: -20.61 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.00 Total: -41.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.29 -9.64 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.591 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds