Wall clock time and date at job start Mon Mar 30 2020 07:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31885 * 119.61634 * 2 1 4 4 C 1.31858 * 121.72255 * 179.71018 * 3 2 1 5 5 C 1.38231 * 120.76244 * 0.57308 * 4 3 2 6 6 C 1.38630 * 119.16121 * 359.71807 * 5 4 3 7 7 C 1.38187 * 119.61659 * 180.27866 * 2 1 3 8 8 C 1.50697 * 120.41764 * 0.02562 * 7 2 1 9 9 N 1.46902 * 109.47019 * 79.99933 * 8 7 2 10 10 C 1.46904 * 111.00050 * 179.97438 * 9 8 7 11 11 H 1.09001 * 110.43659 * 327.54426 * 10 9 8 12 12 C 1.54266 * 110.48685 * 90.22964 * 10 9 8 13 13 C 1.53870 * 106.60006 * 142.28766 * 12 10 9 14 14 C 1.54272 * 106.59783 * 0.02562 * 13 12 10 15 15 H 1.08997 * 110.48624 * 95.06826 * 14 13 12 16 16 C 1.50696 * 110.48546 * 217.70963 * 14 13 12 17 17 H 1.08000 * 120.00101 * 114.77564 * 16 14 13 18 18 C 1.37882 * 120.00173 * 294.77938 * 16 14 13 19 19 N 1.31508 * 119.99924 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00088 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47219 * 59.99405 * 20 18 16 22 22 H 1.48500 * 109.47137 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47197 * 299.99939 * 20 18 16 24 24 C 1.54887 * 104.19488 * 336.38724 * 14 13 12 25 25 H 1.09001 * 109.46953 * 269.72222 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71820 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72450 * 1 2 3 28 28 H 1.08000 * 119.61392 * 180.26688 * 4 3 2 29 29 H 1.07996 * 120.41560 * 179.74733 * 5 4 3 30 30 H 1.07998 * 120.78641 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.47337 * 200.00267 * 8 7 2 32 32 H 1.08996 * 109.47323 * 320.00398 * 8 7 2 33 33 H 1.00900 * 110.99683 * 56.04983 * 9 8 7 34 34 H 1.08994 * 110.02966 * 261.57743 * 12 10 9 35 35 H 1.08998 * 110.02702 * 23.00222 * 12 10 9 36 36 H 1.08998 * 110.03129 * 240.71651 * 13 12 10 37 37 H 1.08999 * 110.03307 * 119.28416 * 13 12 10 38 38 H 0.96996 * 119.99928 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.75941 * 279.62476 * 24 14 13 40 40 H 1.09004 * 110.91049 * 156.33016 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0057 5 6 4.2267 0.0340 0.0000 6 6 3.5766 -1.1904 -0.0058 7 6 2.1900 -1.2013 -0.0058 8 6 1.4373 -2.5068 -0.0128 9 7 0.9849 -2.8039 -1.3784 10 6 0.2460 -4.0728 -1.4239 11 1 0.6403 -4.7696 -0.6842 12 6 -1.2596 -3.8295 -1.1920 13 6 -2.0099 -4.8027 -2.1181 14 6 -0.9340 -5.6039 -2.8801 15 1 -0.7329 -6.5486 -2.3750 16 6 -1.3664 -5.8468 -4.3031 17 1 -0.8151 -5.4021 -5.1184 18 6 -2.4659 -6.6367 -4.5643 19 7 -3.1370 -7.1786 -3.5716 20 14 -3.0014 -6.9383 -6.3283 21 1 -1.9000 -7.5985 -7.0740 22 1 -4.2004 -7.8144 -6.3387 23 1 -3.3293 -5.6422 -6.9746 24 6 0.3171 -4.6916 -2.8418 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 3.9753 2.1529 0.0098 29 1 5.3057 0.0803 0.0006 30 1 4.1368 -2.1137 -0.0108 31 1 2.0922 -3.3057 0.3349 32 1 0.5735 -2.4318 0.6478 33 1 1.7617 -2.8150 -2.0223 34 1 -1.5147 -4.0322 -0.1519 35 1 -1.5149 -2.8007 -1.4459 36 1 -2.6294 -4.2461 -2.8214 37 1 -2.6292 -5.4777 -1.5275 38 1 -3.9102 -7.7346 -3.7554 39 1 0.2531 -3.9161 -3.6050 40 1 1.2289 -5.2764 -2.9631 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:37 Heat of formation + Delta-G solvation = -2.389097 kcal Electronic energy + Delta-G solvation = -19033.175576 eV Core-core repulsion = 16231.854489 eV Total energy + Delta-G solvation = -2801.321087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25867 -39.30835 -36.34192 -34.40434 -33.84524 -32.66993 -29.87709 -29.05857 -28.14899 -26.19248 -25.14322 -23.34452 -22.37941 -21.09509 -20.64043 -18.30492 -17.77051 -17.22639 -16.70989 -16.54981 -16.39114 -15.77638 -15.28524 -14.93043 -14.60361 -14.17890 -14.00976 -13.88924 -13.62093 -13.41014 -13.25731 -12.99779 -12.91006 -12.71326 -12.42875 -12.24849 -11.90606 -11.72003 -11.60002 -11.35437 -10.96920 -10.71897 -10.66307 -10.45154 -10.34347 -9.71259 -9.29300 -8.10477 -6.19476 0.19133 0.38758 1.41914 1.43193 1.50649 2.44686 2.81068 3.20684 3.36404 3.51571 3.81676 3.94126 4.00372 4.08972 4.13847 4.18656 4.38754 4.54533 4.61954 4.75101 4.76862 4.78177 4.82162 4.90217 4.94944 5.02584 5.16769 5.19159 5.27285 5.28831 5.34031 5.39411 5.46528 5.53478 5.69194 5.85977 5.93490 6.01645 6.22589 6.43096 6.50159 6.92050 7.11634 7.47663 8.98631 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.003715 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.274666 B = 7535.998371 C = 7635.064577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.131 3.869 3 N -0.519 5.519 4 C 0.087 3.913 5 C -0.178 4.178 6 C -0.073 4.073 7 C -0.142 4.142 8 C 0.106 3.894 9 N -0.676 5.676 10 C 0.096 3.904 11 H 0.050 0.950 12 C -0.104 4.104 13 C -0.088 4.088 14 C 0.040 3.960 15 H -0.001 1.001 16 C -0.532 4.532 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.106 4.106 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.177 0.823 29 H 0.164 0.836 30 H 0.152 0.848 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.343 0.657 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.618 12.738 9.253 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.006 4.006 3 N -0.229 5.229 4 C -0.070 4.070 5 C -0.197 4.197 6 C -0.099 4.099 7 C -0.144 4.144 8 C -0.023 4.023 9 N -0.307 5.307 10 C -0.013 4.013 11 H 0.068 0.932 12 C -0.142 4.142 13 C -0.127 4.127 14 C 0.021 3.979 15 H 0.017 0.983 16 C -0.570 4.570 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.560 5.560 20 Si 0.777 3.223 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.144 4.144 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.194 0.806 29 H 0.181 0.819 30 H 0.170 0.830 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.162 0.838 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.412 13.781 9.345 20.768 hybrid contribution 0.494 -1.860 -0.859 2.108 sum 12.905 11.921 8.486 19.511 Atomic orbital electron populations 1.20818 0.88613 1.04041 1.03120 1.21354 0.97570 0.87956 0.93709 1.67559 1.11415 1.29877 1.14034 1.23240 0.89070 1.00100 0.94610 1.22412 1.02829 0.92618 1.01842 1.21856 0.93364 0.99837 0.94850 1.20708 0.94792 0.95898 1.03032 1.20820 0.98135 0.92182 0.91152 1.60536 1.29608 1.33532 1.07016 1.22228 0.94041 0.88592 0.96434 0.93222 1.22145 0.94358 0.99311 0.98363 1.21868 0.98062 0.96276 0.96514 1.19373 0.91632 0.92708 0.94159 0.98297 1.21532 1.12199 1.29900 0.93366 0.92965 1.25760 0.96746 0.95593 1.00688 1.70083 1.19634 1.33721 1.32573 0.85721 0.77675 0.78139 0.80793 1.19560 1.21088 1.19721 1.22568 0.97989 0.98207 0.95636 0.90004 0.91411 0.89301 0.80600 0.81873 0.83021 0.93278 0.89927 0.83823 0.92396 0.91429 0.95602 0.95515 0.93179 0.92301 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 9.43 71.24 0.67 -1.87 16 2 C 0.13 3.27 6.78 42.54 0.29 3.55 16 3 N -0.52 -13.04 10.27 -183.87 -1.89 -14.93 16 4 C 0.09 1.64 11.18 84.69 0.95 2.58 16 5 C -0.18 -2.77 10.11 22.36 0.23 -2.54 16 6 C -0.07 -1.29 9.82 22.47 0.22 -1.07 16 7 C -0.14 -3.12 5.41 -19.78 -0.11 -3.23 16 8 C 0.11 2.36 4.81 85.56 0.41 2.77 16 9 N -0.68 -18.00 5.64 -490.07 -2.77 -20.76 16 10 C 0.10 3.13 3.19 45.98 0.15 3.27 16 11 H 0.05 1.56 7.82 -2.39 -0.02 1.54 16 12 C -0.10 -3.74 6.53 31.32 0.20 -3.54 16 13 C -0.09 -4.19 5.60 31.32 0.18 -4.01 16 14 C 0.04 2.02 2.72 -10.47 -0.03 1.99 16 15 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 16 C -0.53 -29.64 8.36 25.60 0.21 -29.43 16 17 H 0.05 2.85 7.77 -2.91 -0.02 2.83 16 18 C 0.01 0.60 5.35 84.66 0.45 1.06 16 19 N -0.92 -54.41 12.63 21.45 0.27 -54.13 16 20 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.11 -4.17 5.65 31.88 0.18 -3.99 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 2.24 6.34 -2.39 -0.02 2.22 16 28 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.05 0.98 7.97 -2.39 -0.02 0.96 16 32 H 0.08 1.86 7.29 -2.39 -0.02 1.85 16 33 H 0.34 8.75 8.41 -89.69 -0.75 8.00 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 36 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16 37 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 40 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -64.20 325.13 1.91 -62.30 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.26 Total: 15.76 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 4.00 Total: -34.46 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -4.38 Total: -89.83 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.20 1.91 -62.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.909 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds