Wall clock time and date at job start Mon Mar 30 2020 07:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38671 * 120.41674 * 2 1 4 4 C 1.38630 * 118.41805 * 179.75254 * 3 2 1 5 5 C 1.38230 * 119.16263 * 0.54042 * 4 3 2 6 6 C 1.50695 * 119.62131 * 179.71050 * 5 4 3 7 7 N 1.46898 * 109.46798 * 94.73201 * 6 5 4 8 8 C 1.46905 * 111.00250 * 179.97438 * 7 6 5 9 9 H 1.09001 * 110.66830 * 328.23895 * 8 7 6 10 10 C 1.54891 * 110.75466 * 91.67095 * 8 7 6 11 11 C 1.54267 * 104.19324 * 156.26085 * 10 8 7 12 12 C 1.53876 * 106.59870 * 336.39035 * 11 10 8 13 13 H 1.08997 * 110.02757 * 119.33370 * 12 11 10 14 14 C 1.50701 * 110.03013 * 240.71414 * 12 11 10 15 15 H 1.07996 * 119.99396 * 118.55095 * 14 12 11 16 16 C 1.37870 * 120.00390 * 298.54810 * 14 12 11 17 17 N 1.31511 * 120.00264 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 119.99884 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47273 * 90.00285 * 18 16 14 20 20 H 1.48498 * 109.47181 * 210.00083 * 18 16 14 21 21 H 1.48505 * 109.47468 * 330.00232 * 18 16 14 22 22 C 1.54261 * 106.59990 * 0.02562 * 12 11 10 23 23 N 1.31858 * 120.76044 * 359.44377 * 5 4 3 24 24 C 1.31882 * 121.72327 * 0.27074 * 23 5 4 25 25 H 1.08994 * 109.47481 * 269.97893 * 1 2 3 26 26 H 1.08999 * 109.46484 * 29.98710 * 1 2 3 27 27 H 1.08995 * 109.46638 * 149.97777 * 1 2 3 28 28 H 1.07997 * 120.79476 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.41908 * 180.28332 * 4 3 2 30 30 H 1.08998 * 109.47421 * 334.73988 * 6 5 4 31 31 H 1.09001 * 109.47497 * 214.73346 * 6 5 4 32 32 H 1.00908 * 110.99802 * 56.05166 * 7 6 5 33 33 H 1.09004 * 110.48613 * 37.58457 * 10 8 7 34 34 H 1.08994 * 110.48745 * 274.93875 * 10 8 7 35 35 H 1.08995 * 110.03032 * 217.10762 * 11 10 8 36 36 H 1.08998 * 110.03405 * 95.67701 * 11 10 8 37 37 H 0.97001 * 120.00230 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.48928 * 142.28640 * 22 12 11 39 39 H 1.09001 * 110.48691 * 264.79667 * 22 12 11 40 40 H 1.08008 * 119.61488 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0053 5 6 4.2257 -0.0823 -0.0011 6 6 5.7312 -0.1469 -0.0021 7 7 6.2161 -0.2888 1.3773 8 6 7.6831 -0.3558 1.4155 9 1 8.0700 -0.8330 0.5151 10 6 8.2924 1.0565 1.5981 11 6 9.6805 0.7924 2.2174 12 6 9.5999 -0.5806 2.9075 13 1 10.3213 -1.2654 2.4618 14 6 9.8713 -0.4336 4.3826 15 1 9.1123 -0.7059 5.1009 16 6 11.0885 0.0484 4.8149 17 7 11.3255 0.1762 6.1022 18 14 12.4010 0.5200 3.5722 19 1 12.2449 1.9507 3.2062 20 1 13.7450 0.3048 4.1660 21 1 12.2567 -0.3206 2.3565 22 6 8.1659 -1.1032 2.6830 23 7 3.5255 -1.1996 -0.0010 24 6 2.2067 -1.1916 -0.0002 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3632 0.8901 -0.5136 27 1 -0.3632 -0.8898 -0.5142 28 1 1.6890 2.1423 -0.0004 29 1 4.1735 2.0592 0.0100 30 1 6.1339 0.7682 -0.4362 31 1 6.0579 -1.0033 -0.5920 32 1 5.8059 -1.0956 1.8235 33 1 7.6797 1.6518 2.2751 34 1 8.3934 1.5559 0.6346 35 1 9.9158 1.5649 2.9494 36 1 10.4404 0.7736 1.4362 37 1 12.1820 0.5149 6.4064 38 1 8.1746 -2.1796 2.5115 39 1 7.5329 -0.8589 3.5360 40 1 1.6672 -2.1273 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:20 Heat of formation + Delta-G solvation = 19.136489 kcal Electronic energy + Delta-G solvation = -18722.417208 eV Core-core repulsion = 15922.029541 eV Total energy + Delta-G solvation = -2800.387667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42002 -37.95103 -35.13375 -33.41122 -32.30391 -31.72664 -28.84991 -28.25643 -26.66081 -24.47410 -23.52745 -23.02979 -21.43517 -19.74271 -19.05318 -16.89321 -16.47933 -16.32897 -15.37332 -15.24775 -14.83401 -14.80016 -14.34082 -13.87441 -13.54027 -13.11229 -12.98684 -12.82384 -12.71163 -12.41058 -12.12970 -11.97618 -11.68721 -11.24301 -10.83298 -10.43031 -10.30690 -10.09449 -9.94093 -9.90817 -9.71534 -9.53489 -9.34482 -8.92723 -8.85796 -8.49111 -8.14818 -6.00577 -3.98259 0.94090 1.15469 3.33424 3.42010 3.44523 3.58257 4.14199 4.48066 4.52340 4.59416 4.67767 4.75824 4.82702 5.18887 5.24354 5.26311 5.34421 5.41969 5.48364 5.55217 5.62457 5.66310 5.76506 5.79944 6.04467 6.07339 6.08515 6.38536 6.50690 6.51108 6.57221 6.68292 6.77545 6.88921 7.01840 7.27018 7.39598 7.59793 7.64621 7.87906 7.89303 8.60774 9.04061 9.62580 11.12833 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046342 B = 0.003494 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.062810 B = 8011.861048 C = 8135.432888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.146 4.146 3 C -0.079 4.079 4 C -0.146 4.146 5 C 0.131 3.869 6 C 0.108 3.892 7 N -0.675 5.675 8 C 0.076 3.924 9 H 0.046 0.954 10 C -0.101 4.101 11 C -0.133 4.133 12 C 0.013 3.987 13 H 0.027 0.973 14 C -0.506 4.506 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.265 1.265 22 C -0.105 4.105 23 N -0.478 5.478 24 C 0.098 3.902 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.344 0.656 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.662 1.292 -15.163 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C -0.105 4.105 4 C -0.167 4.167 5 C -0.007 4.007 6 C -0.021 4.021 7 N -0.306 5.306 8 C -0.033 4.033 9 H 0.064 0.936 10 C -0.139 4.139 11 C -0.172 4.172 12 C -0.007 4.007 13 H 0.045 0.955 14 C -0.544 4.544 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.189 1.189 22 C -0.143 4.143 23 N -0.187 5.187 24 C -0.059 4.059 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.162 0.838 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.080 1.218 -14.905 23.463 hybrid contribution 0.488 0.302 -0.860 1.034 sum -17.593 1.520 -15.765 23.672 Atomic orbital electron populations 1.20701 0.90358 1.02910 1.02585 1.20916 0.97491 0.94370 1.01997 1.21487 0.94085 0.98104 0.96844 1.21979 0.94896 0.99283 1.00509 1.21217 0.96406 0.88402 0.94682 1.20833 0.87739 1.01813 0.91736 1.60601 1.07692 1.47615 1.14703 1.22682 0.85028 0.97377 0.98182 0.93647 1.22258 0.96820 0.95686 0.99154 1.22662 0.94867 1.01143 0.98512 1.19671 0.92309 0.91856 0.96829 0.95531 1.21128 1.00642 1.42775 0.89829 0.90922 1.25020 0.98132 0.95273 0.94923 1.69912 1.23936 1.46909 1.13604 0.86908 0.80854 0.79345 0.82038 1.20334 1.22204 1.18950 1.22479 0.98872 0.97292 0.95638 1.67480 1.08227 1.31295 1.11725 1.22606 0.89729 0.97404 0.96211 0.90913 0.91476 0.91294 0.84978 0.84580 0.89656 0.93653 0.83788 0.91025 0.93774 0.91318 0.94504 0.92813 0.93497 0.90936 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.04 36.01 0.36 -0.29 16 2 C -0.15 -1.34 5.90 -104.48 -0.62 -1.96 16 3 C -0.08 -0.75 9.86 -39.28 -0.39 -1.14 16 4 C -0.15 -1.62 9.72 -39.44 -0.38 -2.00 16 5 C 0.13 1.68 6.29 -82.59 -0.52 1.16 16 6 C 0.11 1.42 5.86 -4.98 -0.03 1.39 16 7 N -0.67 -10.32 6.38 -105.90 -0.68 -11.00 16 8 C 0.08 1.31 3.23 -65.73 -0.21 1.09 16 9 H 0.05 0.75 7.82 -51.93 -0.41 0.34 16 10 C -0.10 -1.83 6.51 -25.07 -0.16 -1.99 16 11 C -0.13 -2.89 4.47 -25.61 -0.11 -3.01 16 12 C 0.01 0.30 2.40 -90.65 -0.22 0.08 16 13 H 0.03 0.65 7.22 -51.93 -0.37 0.27 16 14 C -0.51 -14.37 8.92 -34.44 -0.31 -14.67 16 15 H 0.07 2.24 7.80 -52.49 -0.41 1.83 16 16 C 0.07 1.97 5.33 -17.82 -0.09 1.87 16 17 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 18 Si 0.88 22.06 24.58 -169.99 -4.18 17.89 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.26 -6.36 6.44 56.52 0.36 -6.00 16 22 C -0.10 -2.11 5.73 -25.09 -0.14 -2.25 16 23 N -0.48 -6.32 10.27 -9.47 -0.10 -6.42 16 24 C 0.10 1.05 10.86 -17.55 -0.19 0.86 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.09 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.34 5.34 8.42 -39.29 -0.33 5.01 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.62 6.40 -51.93 -0.33 1.29 16 36 H 0.04 0.76 7.39 -51.93 -0.38 0.37 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.55 7.68 -51.93 -0.40 1.15 16 40 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -31.42 321.07 -8.81 -40.23 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.45 Total: 2.66 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -3.02 Total: -20.86 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.00 Total: -44.76 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.18 Total: 17.89 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.42 -8.81 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.362 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds