Wall clock time and date at job start Mon Mar 30 2020 07:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38671 * 120.41674 * 2 1 4 4 C 1.38630 * 118.41805 * 179.75254 * 3 2 1 5 5 C 1.38230 * 119.16263 * 0.54042 * 4 3 2 6 6 C 1.50695 * 119.62131 * 179.71050 * 5 4 3 7 7 N 1.46898 * 109.46798 * 94.73201 * 6 5 4 8 8 C 1.46905 * 111.00250 * 179.97438 * 7 6 5 9 9 H 1.09001 * 110.66830 * 328.23895 * 8 7 6 10 10 C 1.54891 * 110.75466 * 91.67095 * 8 7 6 11 11 C 1.54267 * 104.19324 * 156.26085 * 10 8 7 12 12 C 1.53876 * 106.59870 * 336.39035 * 11 10 8 13 13 H 1.08997 * 110.02757 * 119.33370 * 12 11 10 14 14 C 1.50701 * 110.03013 * 240.71414 * 12 11 10 15 15 H 1.07996 * 119.99396 * 118.55095 * 14 12 11 16 16 C 1.37870 * 120.00390 * 298.54810 * 14 12 11 17 17 N 1.31511 * 120.00264 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 119.99884 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47273 * 90.00285 * 18 16 14 20 20 H 1.48498 * 109.47181 * 210.00083 * 18 16 14 21 21 H 1.48505 * 109.47468 * 330.00232 * 18 16 14 22 22 C 1.54261 * 106.59990 * 0.02562 * 12 11 10 23 23 N 1.31858 * 120.76044 * 359.44377 * 5 4 3 24 24 C 1.31882 * 121.72327 * 0.27074 * 23 5 4 25 25 H 1.08994 * 109.47481 * 269.97893 * 1 2 3 26 26 H 1.08999 * 109.46484 * 29.98710 * 1 2 3 27 27 H 1.08995 * 109.46638 * 149.97777 * 1 2 3 28 28 H 1.07997 * 120.79476 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.41908 * 180.28332 * 4 3 2 30 30 H 1.08998 * 109.47421 * 334.73988 * 6 5 4 31 31 H 1.09001 * 109.47497 * 214.73346 * 6 5 4 32 32 H 1.00908 * 110.99802 * 56.05166 * 7 6 5 33 33 H 1.09004 * 110.48613 * 37.58457 * 10 8 7 34 34 H 1.08994 * 110.48745 * 274.93875 * 10 8 7 35 35 H 1.08995 * 110.03032 * 217.10762 * 11 10 8 36 36 H 1.08998 * 110.03405 * 95.67701 * 11 10 8 37 37 H 0.97001 * 120.00230 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.48928 * 142.28640 * 22 12 11 39 39 H 1.09001 * 110.48691 * 264.79667 * 22 12 11 40 40 H 1.08008 * 119.61488 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0053 5 6 4.2257 -0.0823 -0.0011 6 6 5.7312 -0.1469 -0.0021 7 7 6.2161 -0.2888 1.3773 8 6 7.6831 -0.3558 1.4155 9 1 8.0700 -0.8330 0.5151 10 6 8.2924 1.0565 1.5981 11 6 9.6805 0.7924 2.2174 12 6 9.5999 -0.5806 2.9075 13 1 10.3213 -1.2654 2.4618 14 6 9.8713 -0.4336 4.3826 15 1 9.1123 -0.7059 5.1009 16 6 11.0885 0.0484 4.8149 17 7 11.3255 0.1762 6.1022 18 14 12.4010 0.5200 3.5722 19 1 12.2449 1.9507 3.2062 20 1 13.7450 0.3048 4.1660 21 1 12.2567 -0.3206 2.3565 22 6 8.1659 -1.1032 2.6830 23 7 3.5255 -1.1996 -0.0010 24 6 2.2067 -1.1916 -0.0002 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3632 0.8901 -0.5136 27 1 -0.3632 -0.8898 -0.5142 28 1 1.6890 2.1423 -0.0004 29 1 4.1735 2.0592 0.0100 30 1 6.1339 0.7682 -0.4362 31 1 6.0579 -1.0033 -0.5920 32 1 5.8059 -1.0956 1.8235 33 1 7.6797 1.6518 2.2751 34 1 8.3934 1.5559 0.6346 35 1 9.9158 1.5649 2.9494 36 1 10.4404 0.7736 1.4362 37 1 12.1820 0.5149 6.4064 38 1 8.1746 -2.1796 2.5115 39 1 7.5329 -0.8589 3.5360 40 1 1.6672 -2.1273 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:20 Heat of formation + Delta-G solvation = -1.752662 kcal Electronic energy + Delta-G solvation = -18723.323030 eV Core-core repulsion = 15922.029541 eV Total energy + Delta-G solvation = -2801.293489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21726 -39.46752 -36.35841 -34.63640 -33.87227 -32.78462 -30.23982 -29.73566 -27.89177 -25.63013 -24.92746 -24.13120 -22.26624 -21.21909 -20.88278 -18.53426 -17.72472 -17.25336 -16.88575 -16.47494 -16.06675 -15.83159 -15.71896 -15.00984 -14.77922 -14.57401 -14.09487 -13.90869 -13.64873 -13.50964 -13.34418 -13.13194 -13.02931 -12.61371 -12.43813 -12.13277 -11.88028 -11.81560 -11.58177 -11.54021 -11.18652 -10.87609 -10.70473 -10.68225 -10.36584 -9.73534 -9.33504 -8.26932 -6.29729 0.15312 0.38903 1.35054 1.37613 1.48386 2.36845 2.73602 3.07674 3.27422 3.50973 3.77512 3.91754 3.97114 4.03498 4.09497 4.13074 4.25070 4.42178 4.56115 4.57461 4.72084 4.78573 4.79919 4.84454 4.85739 4.94348 4.96500 5.01274 5.15258 5.22014 5.25697 5.27409 5.39352 5.44442 5.51615 5.64607 5.82871 5.83723 6.17240 6.34909 6.37577 6.77073 7.07402 7.35016 8.90276 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046342 B = 0.003494 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.062810 B = 8011.861048 C = 8135.432888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.141 4.141 3 C -0.084 4.084 4 C -0.154 4.154 5 C 0.106 3.894 6 C 0.113 3.887 7 N -0.678 5.678 8 C 0.092 3.908 9 H 0.063 0.937 10 C -0.093 4.093 11 C -0.133 4.133 12 C 0.007 3.993 13 H 0.026 0.974 14 C -0.513 4.513 15 H 0.027 0.973 16 C 0.007 3.993 17 N -0.956 5.956 18 Si 0.946 3.054 19 H -0.263 1.263 20 H -0.296 1.296 21 H -0.242 1.242 22 C -0.102 4.102 23 N -0.507 5.507 24 C 0.080 3.920 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.341 0.659 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.264 0.736 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.778 2.158 -18.135 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C -0.110 4.110 4 C -0.174 4.174 5 C -0.031 4.031 6 C -0.016 4.016 7 N -0.309 5.309 8 C -0.018 4.018 9 H 0.081 0.919 10 C -0.132 4.132 11 C -0.171 4.171 12 C -0.013 4.013 13 H 0.044 0.956 14 C -0.551 4.551 15 H 0.045 0.955 16 C -0.189 4.189 17 N -0.597 5.597 18 Si 0.771 3.229 19 H -0.188 1.188 20 H -0.223 1.223 21 H -0.166 1.166 22 C -0.140 4.140 23 N -0.217 5.217 24 C -0.077 4.077 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.177 0.823 29 H 0.165 0.835 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.222 2.080 -17.899 26.348 hybrid contribution 0.681 -0.020 0.153 0.699 sum -18.541 2.060 -17.746 25.747 Atomic orbital electron populations 1.20771 0.87944 1.04256 1.03364 1.21290 0.99224 0.93745 1.00052 1.21871 0.93689 0.99453 0.95953 1.22179 0.95906 0.99059 1.00296 1.21208 0.96200 0.89127 0.96611 1.20842 0.88413 1.02275 0.90087 1.60553 1.06398 1.47479 1.16485 1.22460 0.86301 0.96169 0.96828 0.91940 1.22194 0.94397 0.96351 1.00210 1.22535 0.97715 0.98556 0.98321 1.19677 0.94351 0.93619 0.93616 0.95566 1.21443 0.99622 1.41982 0.92016 0.95462 1.25944 1.00793 0.95301 0.96891 1.70074 1.24853 1.48681 1.16076 0.85840 0.77142 0.79986 0.79968 1.18821 1.22327 1.16579 1.22358 0.96591 0.98308 0.96734 1.67419 1.09574 1.31972 1.12725 1.23027 0.89266 0.98999 0.96392 0.90236 0.90059 0.90110 0.82298 0.83473 0.88324 0.93892 0.84142 0.92179 0.90432 0.93817 0.92612 0.92703 0.92526 0.93225 0.81270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.04 71.24 0.72 -0.24 16 2 C -0.14 -2.28 5.90 -19.77 -0.12 -2.40 16 3 C -0.08 -1.39 9.86 22.47 0.22 -1.16 16 4 C -0.15 -3.13 9.72 22.36 0.22 -2.91 16 5 C 0.11 2.58 6.29 42.55 0.27 2.85 16 6 C 0.11 2.77 5.86 85.56 0.50 3.27 16 7 N -0.68 -19.86 6.38 -488.97 -3.12 -22.98 16 8 C 0.09 2.96 3.23 46.20 0.15 3.11 16 9 H 0.06 1.85 7.82 -2.39 -0.02 1.83 16 10 C -0.09 -3.16 6.51 31.67 0.21 -2.95 16 11 C -0.13 -5.51 4.47 31.32 0.14 -5.37 16 12 C 0.01 0.31 2.40 -10.82 -0.03 0.29 16 13 H 0.03 1.23 7.22 -2.39 -0.02 1.22 16 14 C -0.51 -30.13 8.92 25.60 0.23 -29.90 16 15 H 0.03 1.79 7.80 -2.91 -0.02 1.76 16 16 C 0.01 0.40 5.33 84.65 0.45 0.85 16 17 N -0.96 -61.53 13.96 21.44 0.30 -61.23 16 18 Si 0.95 45.36 24.58 68.60 1.69 47.05 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.24 -10.66 6.44 99.48 0.64 -10.02 16 22 C -0.10 -4.08 5.73 31.66 0.18 -3.90 16 23 N -0.51 -12.98 10.27 -183.88 -1.89 -14.87 16 24 C 0.08 1.61 10.86 84.67 0.92 2.53 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.53 8.10 -2.39 -0.02 0.51 16 27 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 28 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 29 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.10 2.11 8.04 -2.39 -0.02 2.09 16 31 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 32 H 0.34 10.43 8.42 -89.69 -0.76 9.67 16 33 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.04 2.02 6.40 -2.39 -0.02 2.00 16 36 H 0.06 2.09 7.39 -2.39 -0.02 2.08 16 37 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 2.19 7.68 -2.39 -0.02 2.17 16 40 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -70.25 321.07 1.22 -69.02 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.19 Total: 18.95 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 4.06 Total: -35.94 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -4.71 Total: -99.08 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.69 Total: 47.05 kcal Total: -70.25 1.22 -69.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.272 kcal (2) G-P(sol) polarization free energy of solvation -70.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds