Wall clock time and date at job start Mon Mar 30 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38223 * 119.61683 * 2 1 4 4 C 1.38631 * 119.15837 * 179.97438 * 3 2 1 5 5 C 1.38671 * 118.42220 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.41930 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47452 * 89.99849 * 6 5 4 8 8 C 1.46897 * 111.00150 * 180.02562 * 7 6 5 9 9 H 1.09002 * 110.43506 * 325.69899 * 8 7 6 10 10 C 1.54266 * 110.59994 * 88.32056 * 8 7 6 11 11 C 1.53869 * 106.60137 * 142.34346 * 10 8 7 12 12 C 1.54273 * 106.59806 * 0.02562 * 11 10 8 13 13 H 1.08993 * 110.48688 * 95.06512 * 12 11 10 14 14 C 1.50696 * 110.59505 * 217.65613 * 12 11 10 15 15 H 1.08000 * 119.99723 * 114.84011 * 14 12 11 16 16 C 1.37870 * 120.00432 * 294.83683 * 14 12 11 17 17 N 1.31518 * 120.00297 * 180.02562 * 16 14 12 18 18 Si 1.86807 * 119.99776 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.47147 * 90.00030 * 18 16 14 20 20 H 1.48501 * 109.47154 * 210.00174 * 18 16 14 21 21 H 1.48493 * 109.46963 * 329.99730 * 18 16 14 22 22 C 1.54885 * 104.19251 * 336.38783 * 12 11 10 23 23 C 1.38185 * 119.16224 * 0.27140 * 5 4 3 24 24 N 1.31852 * 119.61892 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47293 * 89.99945 * 1 2 3 26 26 H 1.08998 * 109.46930 * 210.00686 * 1 2 3 27 27 H 1.09001 * 109.47017 * 330.00275 * 1 2 3 28 28 H 1.08002 * 120.42535 * 359.95635 * 3 2 1 29 29 H 1.08001 * 120.78817 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47143 * 329.99589 * 6 5 4 31 31 H 1.09000 * 109.47026 * 209.99763 * 6 5 4 32 32 H 1.00906 * 110.99807 * 303.95703 * 7 6 5 33 33 H 1.09003 * 110.03136 * 261.63059 * 10 8 7 34 34 H 1.08998 * 110.03298 * 23.05300 * 10 8 7 35 35 H 1.09002 * 110.03727 * 240.71379 * 11 10 8 36 36 H 1.09003 * 110.07452 * 119.30336 * 11 10 8 37 37 H 0.97005 * 119.99637 * 180.02562 * 17 16 14 38 38 H 1.08999 * 110.76189 * 279.63192 * 22 12 11 39 39 H 1.08999 * 110.91620 * 156.33287 * 22 12 11 40 40 H 1.07991 * 119.61372 * 179.70454 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0343 0.0016 6 6 5.7323 -0.0988 0.0028 7 7 6.2205 -0.1191 1.3882 8 6 7.6876 -0.1814 1.4285 9 1 8.0664 -0.7739 0.5956 10 6 8.2921 1.2376 1.4006 11 6 9.5144 1.2132 2.3350 12 6 9.6104 -0.2201 2.8976 13 1 10.2998 -0.8183 2.3018 14 6 10.0464 -0.1953 4.3399 15 1 9.3743 -0.5372 5.1130 16 6 11.3031 0.2638 4.6725 17 7 11.6837 0.2849 5.9312 18 14 12.4654 0.8558 3.3352 19 1 12.2644 2.3102 3.1130 20 1 13.8685 0.6082 3.7537 21 1 12.1872 0.1195 2.0761 22 6 8.1688 -0.7731 2.7764 23 6 3.4766 -1.1948 -0.0036 24 7 2.1587 -1.1462 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6508 2.1374 -0.0007 29 1 4.1366 2.1139 0.0010 30 1 6.1338 0.7745 -0.5112 31 1 6.0575 -1.0038 -0.5103 32 1 5.8784 0.6779 1.9038 33 1 8.6019 1.4916 0.3869 34 1 7.5613 1.9619 1.7606 35 1 9.3769 1.9256 3.1485 36 1 10.4179 1.4556 1.7755 37 1 12.5678 0.6083 6.1652 38 1 7.5477 -0.4162 3.5980 39 1 8.1715 -1.8625 2.7412 40 1 3.9755 -2.1526 -0.0077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449447507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:40 Heat of formation + Delta-G solvation = 18.032038 kcal Electronic energy + Delta-G solvation = -18702.501601 eV Core-core repulsion = 15902.066041 eV Total energy + Delta-G solvation = -2800.435560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43290 -38.14122 -35.26654 -32.96095 -32.43711 -31.83961 -28.98894 -28.26684 -26.79055 -24.36546 -23.59993 -23.05477 -21.41492 -19.95632 -19.11766 -16.81320 -16.71816 -16.42436 -15.66301 -15.30169 -14.84623 -14.56426 -14.08504 -13.86985 -13.43941 -13.32147 -12.92038 -12.65012 -12.59914 -12.48452 -12.42522 -12.08261 -11.81904 -11.34014 -10.98179 -10.76286 -10.33611 -10.10113 -9.98620 -9.94597 -9.70939 -9.59168 -9.38320 -8.94818 -8.94636 -8.52881 -8.13375 -6.04243 -4.02473 0.93793 1.13861 3.29414 3.38260 3.40076 3.58516 4.14106 4.43340 4.44358 4.54595 4.71230 4.80397 4.86705 5.13282 5.19690 5.30669 5.32249 5.34729 5.38190 5.49029 5.54856 5.63360 5.68677 5.79942 5.95106 5.97288 6.15196 6.23686 6.37070 6.44223 6.57047 6.57466 6.73858 6.82076 6.94324 7.20909 7.31013 7.53954 7.60154 7.82892 7.86764 8.57882 9.01004 9.59047 11.09218 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.048157 B = 0.003447 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.293954 B = 8122.232037 C = 8264.880489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.120 3.880 3 C -0.174 4.174 4 C -0.068 4.068 5 C -0.134 4.134 6 C 0.101 3.899 7 N -0.676 5.676 8 C 0.078 3.922 9 H 0.075 0.925 10 C -0.147 4.147 11 C -0.128 4.128 12 C 0.010 3.990 13 H 0.031 0.969 14 C -0.506 4.506 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.879 3.121 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.265 1.265 22 C -0.088 4.088 23 C 0.124 3.876 24 N -0.487 5.487 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.340 0.660 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.624 2.472 -14.858 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.193 4.193 4 C -0.095 4.095 5 C -0.136 4.136 6 C -0.029 4.029 7 N -0.306 5.306 8 C -0.031 4.031 9 H 0.094 0.906 10 C -0.186 4.186 11 C -0.166 4.166 12 C -0.010 4.010 13 H 0.049 0.951 14 C -0.544 4.544 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.708 3.292 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.190 1.190 22 C -0.126 4.126 23 C -0.033 4.033 24 N -0.196 5.196 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.037 1.053 -14.665 23.271 hybrid contribution 1.588 2.285 -0.881 2.919 sum -16.449 3.339 -15.547 22.879 Atomic orbital electron populations 1.20698 0.89039 1.03423 1.02878 1.21293 0.96986 0.88506 0.95022 1.21906 0.94787 0.99209 1.03446 1.21517 0.94399 0.97954 0.95623 1.20869 0.97120 0.94087 1.01541 1.20827 0.89017 1.01487 0.91567 1.60721 1.10034 1.48730 1.11133 1.22623 0.84812 0.95560 1.00122 0.90641 1.22833 0.99316 0.97282 0.99180 1.22567 0.94783 1.01754 0.97502 1.19970 0.92936 0.91011 0.97053 0.95139 1.21050 1.00120 1.42340 0.90892 0.90831 1.25014 0.97860 0.95319 0.95033 1.69914 1.20050 1.47622 1.16685 0.86903 0.79980 0.79442 0.82901 1.20490 1.22072 1.18968 1.22352 0.97215 0.98925 0.94134 1.22662 0.88812 0.98272 0.93575 1.67548 1.10013 1.29307 1.12761 0.90596 0.90490 0.90836 0.85019 0.85099 0.94388 0.89984 0.84099 0.93411 0.92732 0.91505 0.94233 0.92780 0.91651 0.92642 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.01 0.37 -0.40 16 2 C 0.12 1.27 6.78 -82.59 -0.56 0.71 16 3 C -0.17 -1.65 9.74 -39.44 -0.38 -2.03 16 4 C -0.07 -0.69 9.86 -39.28 -0.39 -1.07 16 5 C -0.13 -1.49 5.41 -104.48 -0.57 -2.05 16 6 C 0.10 1.14 5.69 -4.98 -0.03 1.11 16 7 N -0.68 -9.28 6.34 -106.25 -0.67 -9.95 16 8 C 0.08 1.24 3.16 -66.07 -0.21 1.03 16 9 H 0.08 1.15 7.85 -51.93 -0.41 0.75 16 10 C -0.15 -2.40 6.48 -25.62 -0.17 -2.57 16 11 C -0.13 -2.66 4.89 -25.61 -0.13 -2.78 16 12 C 0.01 0.22 2.28 -90.11 -0.21 0.02 16 13 H 0.03 0.72 7.06 -51.93 -0.37 0.36 16 14 C -0.51 -14.14 8.95 -34.44 -0.31 -14.45 16 15 H 0.07 2.24 8.01 -52.49 -0.42 1.82 16 16 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 17 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 18 Si 0.88 21.76 24.88 -169.99 -4.23 17.53 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.26 -6.26 6.41 56.52 0.36 -5.90 16 22 C -0.09 -1.73 5.96 -24.75 -0.15 -1.88 16 23 C 0.12 1.48 10.86 -17.55 -0.19 1.29 16 24 N -0.49 -6.11 10.27 -9.48 -0.10 -6.20 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 32 H 0.34 4.62 8.11 -39.29 -0.32 4.30 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.83 7.55 -51.93 -0.39 0.44 16 35 H 0.07 1.49 7.84 -51.93 -0.41 1.08 16 36 H 0.04 0.82 6.04 -51.93 -0.31 0.51 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -30.93 321.54 -8.82 -39.75 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.43 Total: 2.26 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -3.01 Total: -21.20 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.00 Total: -43.19 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.23 Total: 17.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.93 -8.82 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.784 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds