Wall clock time and date at job start Mon Mar 30 2020 07:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47015 * 2 1 4 4 C 1.34661 * 119.36063 * 275.29933 * 3 2 1 5 5 C 1.46873 * 118.53437 * 180.26961 * 4 3 2 6 6 N 1.32191 * 121.21056 * 179.71018 * 5 4 3 7 7 C 1.46495 * 119.99823 * 185.59958 * 6 5 4 8 8 H 1.09004 * 110.67326 * 358.48232 * 7 6 5 9 9 C 1.54893 * 110.75489 * 121.92144 * 7 6 5 10 10 C 1.54262 * 104.19554 * 156.25953 * 9 7 6 11 11 C 1.53879 * 106.59697 * 336.38498 * 10 9 7 12 12 H 1.09008 * 110.03085 * 119.29048 * 11 10 9 13 13 C 1.50706 * 110.03213 * 240.66829 * 11 10 9 14 14 H 1.07999 * 119.99431 * 118.55311 * 13 11 10 15 15 C 1.37874 * 119.99952 * 298.54710 * 13 11 10 16 16 N 1.31517 * 119.99618 * 180.02562 * 15 13 11 17 17 Si 1.86796 * 120.00306 * 0.02562 * 15 13 11 18 18 H 1.48498 * 109.47308 * 89.99628 * 17 15 13 19 19 H 1.48504 * 109.47226 * 210.00032 * 17 15 13 20 20 H 1.48500 * 109.47025 * 329.99760 * 17 15 13 21 21 C 1.54260 * 106.60077 * 0.02562 * 11 10 9 22 22 C 1.46859 * 117.57451 * 359.44504 * 5 4 3 23 23 C 1.34665 * 118.54160 * 0.26927 * 22 5 4 24 24 N 1.35901 * 121.27103 * 0.02562 * 23 22 5 25 25 H 0.96999 * 118.60465 * 179.97438 * 24 23 22 26 26 H 1.08990 * 109.47391 * 300.00499 * 1 2 3 27 27 H 1.09004 * 109.46923 * 60.00810 * 1 2 3 28 28 H 1.09001 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.48008 * 239.99835 * 2 1 3 30 30 H 1.09008 * 109.47350 * 119.99419 * 2 1 3 31 31 H 1.07996 * 120.73463 * 359.97438 * 4 3 2 32 32 H 1.08999 * 110.48891 * 37.57715 * 9 7 6 33 33 H 1.09000 * 110.48331 * 274.93006 * 9 7 6 34 34 H 1.09005 * 110.03327 * 217.10836 * 10 9 7 35 35 H 1.08995 * 110.03874 * 95.67235 * 10 9 7 36 36 H 0.97001 * 119.99751 * 180.02562 * 16 15 13 37 37 H 1.09003 * 110.48979 * 142.28210 * 21 11 10 38 38 H 1.08997 * 110.48888 * 264.93304 * 21 11 10 39 39 H 1.08001 * 120.73201 * 180.25460 * 22 5 4 40 40 H 1.07992 * 119.36693 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1502 2.0795 -1.1686 5 6 2.6472 3.4614 -1.1481 6 7 2.7890 4.1550 -2.2645 7 6 3.4012 5.4854 -2.2274 8 1 3.6573 5.7628 -1.2049 9 6 4.6482 5.5415 -3.1445 10 6 4.8000 7.0383 -3.4853 11 6 3.4097 7.6731 -3.3065 12 1 3.4488 8.4482 -2.5410 13 6 2.9387 8.2607 -4.6120 14 1 2.0389 7.8877 -5.0785 15 6 3.6565 9.2743 -5.2105 16 7 3.2452 9.7873 -6.3495 17 14 5.2131 9.9189 -4.4039 18 1 6.3811 9.1413 -4.8900 19 1 5.3934 11.3516 -4.7503 20 1 5.1024 9.7762 -2.9299 21 6 2.4617 6.5400 -2.8627 22 6 2.9753 4.0465 0.1583 23 6 2.8106 3.2914 1.2612 24 7 2.3522 2.0147 1.1799 25 1 2.2485 1.5055 1.9990 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.8896 1.6005 -2.1008 32 1 4.4819 4.9589 -4.0506 33 1 5.5288 5.1800 -2.6135 34 1 5.1336 7.1545 -4.5165 35 1 5.5137 7.5053 -2.8067 36 1 3.7504 10.5002 -6.7708 37 1 1.7467 6.9072 -2.1265 38 1 1.9422 6.1183 -3.7231 39 1 3.3408 5.0600 0.2330 40 1 3.0481 3.7082 2.2287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450669088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:08 Heat of formation + Delta-G solvation = 35.905199 kcal Electronic energy + Delta-G solvation = -18893.753729 eV Core-core repulsion = 16094.093208 eV Total energy + Delta-G solvation = -2799.660521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15312 -37.57912 -34.93440 -34.18133 -32.20666 -30.16762 -30.02977 -28.15924 -27.02319 -24.51369 -23.34880 -22.63911 -21.04776 -19.37403 -18.84695 -18.42595 -16.64282 -16.20199 -15.79170 -15.17529 -14.63659 -14.54110 -14.15197 -13.98592 -13.91558 -13.02614 -12.81167 -12.52114 -12.27517 -12.18567 -12.09864 -11.67657 -11.53782 -11.33241 -11.12927 -10.78332 -10.29664 -10.04051 -9.94616 -9.80659 -9.60318 -9.44346 -9.24452 -8.77390 -8.49708 -8.42339 -6.94799 -5.94080 -3.90950 1.56704 1.63374 2.99993 3.38206 3.45792 3.49271 3.78726 4.20839 4.53920 4.54697 4.69595 4.89193 4.93188 5.19522 5.31240 5.35189 5.36432 5.45165 5.53583 5.69870 5.76570 5.82623 5.83493 5.95821 6.13009 6.29769 6.30602 6.51277 6.62486 6.65452 6.71519 6.90522 6.96435 7.10688 7.12450 7.15392 7.28439 7.42203 7.68036 7.95530 8.59533 8.69540 9.11474 9.69322 11.19476 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042966 B = 0.003873 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.528356 B = 7227.295069 C = 7524.350460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C 0.127 3.873 4 C -0.178 4.178 5 C 0.211 3.789 6 N -0.536 5.536 7 C 0.060 3.940 8 H 0.046 0.954 9 C -0.098 4.098 10 C -0.131 4.131 11 C 0.011 3.989 12 H 0.026 0.974 13 C -0.503 4.503 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.265 1.265 21 C -0.087 4.087 22 C -0.253 4.253 23 C 0.113 3.887 24 N -0.620 5.620 25 H 0.406 0.594 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.261 0.739 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.139 0.861 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -20.161 19.176 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C 0.020 3.980 4 C -0.204 4.204 5 C 0.031 3.969 6 N -0.249 5.249 7 C -0.051 4.051 8 H 0.064 0.936 9 C -0.136 4.136 10 C -0.169 4.169 11 C -0.009 4.009 12 H 0.044 0.956 13 C -0.541 4.541 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.545 5.545 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.222 1.222 20 H -0.190 1.190 21 C -0.126 4.126 22 C -0.281 4.281 23 C -0.013 4.013 24 N -0.229 5.229 25 H 0.239 0.761 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.157 0.843 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.567 -19.881 17.934 26.821 hybrid contribution 1.160 0.788 1.453 2.019 sum -0.407 -19.094 19.387 27.214 Atomic orbital electron populations 1.21789 0.93846 1.02193 1.02900 1.20663 0.96901 0.90683 1.03960 1.19821 0.97737 0.94569 0.85864 1.21270 1.09214 0.93508 0.96432 1.21457 0.93688 0.92789 0.88982 1.73105 1.17450 1.08611 1.25733 1.22842 0.95669 0.89075 0.97479 0.93595 1.22222 0.94850 0.97539 0.98970 1.22646 0.99493 0.94047 1.00739 1.19728 0.90672 0.93195 0.97278 0.95619 1.21154 1.11024 1.17758 1.04150 0.90897 1.25021 0.97599 0.96151 0.94622 1.69921 1.39933 1.27192 1.17460 0.86908 0.84286 0.77370 0.80609 1.20342 1.22200 1.18969 1.22287 0.96874 0.94292 0.99098 1.22621 1.11094 1.01508 0.92858 1.21254 0.96186 0.84118 0.99747 1.40715 1.61458 1.12654 1.08085 0.76084 0.92647 0.91594 0.91905 0.89020 0.90855 0.84258 0.91226 0.93852 0.91296 0.94520 0.92884 0.93984 0.91134 0.84305 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.08 -0.46 6.09 -27.88 -0.17 -0.63 16 3 C 0.13 1.13 6.06 -82.05 -0.50 0.63 16 4 C -0.18 -2.27 9.89 -37.36 -0.37 -2.64 16 5 C 0.21 3.43 6.97 -80.73 -0.56 2.86 16 6 N -0.54 -10.60 10.40 -47.46 -0.49 -11.10 16 7 C 0.06 1.23 3.48 -65.95 -0.23 1.00 16 8 H 0.05 0.88 5.38 -51.93 -0.28 0.60 16 9 C -0.10 -2.06 6.51 -25.07 -0.16 -2.22 16 10 C -0.13 -3.08 4.47 -25.61 -0.11 -3.20 16 11 C 0.01 0.27 2.39 -90.65 -0.22 0.05 16 12 H 0.03 0.66 7.22 -51.92 -0.37 0.29 16 13 C -0.50 -15.05 8.93 -34.44 -0.31 -15.36 16 14 H 0.07 2.37 7.80 -52.49 -0.41 1.96 16 15 C 0.07 2.01 5.33 -17.82 -0.09 1.92 16 16 N -0.91 -28.97 13.96 55.43 0.77 -28.20 16 17 Si 0.88 22.83 24.58 -169.99 -4.18 18.65 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 20 H -0.26 -6.60 6.44 56.52 0.36 -6.23 16 21 C -0.09 -2.03 6.03 -25.09 -0.15 -2.18 16 22 C -0.25 -3.37 9.45 -37.36 -0.35 -3.73 16 23 C 0.11 1.01 11.13 -17.01 -0.19 0.82 16 24 N -0.62 -4.51 5.22 -9.40 -0.05 -4.56 16 25 H 0.41 1.47 8.66 -40.82 -0.35 1.12 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.07 0.26 8.06 -51.92 -0.42 -0.16 16 31 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.74 6.41 -51.93 -0.33 1.41 16 35 H 0.04 0.81 7.39 -51.93 -0.38 0.42 16 36 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.77 7.69 -51.93 -0.40 1.37 16 39 H 0.14 1.92 5.99 -52.49 -0.31 1.60 16 40 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -35.58 317.39 -8.46 -44.04 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.24 Total: -0.47 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.05 Total: -23.14 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.23 Total: -43.86 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.18 Total: 18.65 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.58 -8.46 -44.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450669088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.943 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds