Wall clock time and date at job start Mon Mar 30 2020 07:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47015 * 2 1 4 4 C 1.34661 * 119.36063 * 275.29933 * 3 2 1 5 5 C 1.46873 * 118.53437 * 180.26961 * 4 3 2 6 6 N 1.32191 * 121.21056 * 179.71018 * 5 4 3 7 7 C 1.46495 * 119.99823 * 185.59958 * 6 5 4 8 8 H 1.09004 * 110.67326 * 358.48232 * 7 6 5 9 9 C 1.54893 * 110.75489 * 121.92144 * 7 6 5 10 10 C 1.54262 * 104.19554 * 156.25953 * 9 7 6 11 11 C 1.53879 * 106.59697 * 336.38498 * 10 9 7 12 12 H 1.09008 * 110.03085 * 119.29048 * 11 10 9 13 13 C 1.50706 * 110.03213 * 240.66829 * 11 10 9 14 14 H 1.07999 * 119.99431 * 118.55311 * 13 11 10 15 15 C 1.37874 * 119.99952 * 298.54710 * 13 11 10 16 16 N 1.31517 * 119.99618 * 180.02562 * 15 13 11 17 17 Si 1.86796 * 120.00306 * 0.02562 * 15 13 11 18 18 H 1.48498 * 109.47308 * 89.99628 * 17 15 13 19 19 H 1.48504 * 109.47226 * 210.00032 * 17 15 13 20 20 H 1.48500 * 109.47025 * 329.99760 * 17 15 13 21 21 C 1.54260 * 106.60077 * 0.02562 * 11 10 9 22 22 C 1.46859 * 117.57451 * 359.44504 * 5 4 3 23 23 C 1.34665 * 118.54160 * 0.26927 * 22 5 4 24 24 N 1.35901 * 121.27103 * 0.02562 * 23 22 5 25 25 H 0.96999 * 118.60465 * 179.97438 * 24 23 22 26 26 H 1.08990 * 109.47391 * 300.00499 * 1 2 3 27 27 H 1.09004 * 109.46923 * 60.00810 * 1 2 3 28 28 H 1.09001 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.48008 * 239.99835 * 2 1 3 30 30 H 1.09008 * 109.47350 * 119.99419 * 2 1 3 31 31 H 1.07996 * 120.73463 * 359.97438 * 4 3 2 32 32 H 1.08999 * 110.48891 * 37.57715 * 9 7 6 33 33 H 1.09000 * 110.48331 * 274.93006 * 9 7 6 34 34 H 1.09005 * 110.03327 * 217.10836 * 10 9 7 35 35 H 1.08995 * 110.03874 * 95.67235 * 10 9 7 36 36 H 0.97001 * 119.99751 * 180.02562 * 16 15 13 37 37 H 1.09003 * 110.48979 * 142.28210 * 21 11 10 38 38 H 1.08997 * 110.48888 * 264.93304 * 21 11 10 39 39 H 1.08001 * 120.73201 * 180.25460 * 22 5 4 40 40 H 1.07992 * 119.36693 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1502 2.0795 -1.1686 5 6 2.6472 3.4614 -1.1481 6 7 2.7890 4.1550 -2.2645 7 6 3.4012 5.4854 -2.2274 8 1 3.6573 5.7628 -1.2049 9 6 4.6482 5.5415 -3.1445 10 6 4.8000 7.0383 -3.4853 11 6 3.4097 7.6731 -3.3065 12 1 3.4488 8.4482 -2.5410 13 6 2.9387 8.2607 -4.6120 14 1 2.0389 7.8877 -5.0785 15 6 3.6565 9.2743 -5.2105 16 7 3.2452 9.7873 -6.3495 17 14 5.2131 9.9189 -4.4039 18 1 6.3811 9.1413 -4.8900 19 1 5.3934 11.3516 -4.7503 20 1 5.1024 9.7762 -2.9299 21 6 2.4617 6.5400 -2.8627 22 6 2.9753 4.0465 0.1583 23 6 2.8106 3.2914 1.2612 24 7 2.3522 2.0147 1.1799 25 1 2.2485 1.5055 1.9990 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.8896 1.6005 -2.1008 32 1 4.4819 4.9589 -4.0506 33 1 5.5288 5.1800 -2.6135 34 1 5.1336 7.1545 -4.5165 35 1 5.5137 7.5053 -2.8067 36 1 3.7504 10.5002 -6.7708 37 1 1.7467 6.9072 -2.1265 38 1 1.9422 6.1183 -3.7231 39 1 3.3408 5.0600 0.2330 40 1 3.0481 3.7082 2.2287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450669088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:08 Heat of formation + Delta-G solvation = 10.209720 kcal Electronic energy + Delta-G solvation = -18894.867969 eV Core-core repulsion = 16094.093208 eV Total energy + Delta-G solvation = -2800.774761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03025 -39.26684 -36.15601 -34.98133 -34.34637 -31.45700 -30.83553 -30.00434 -28.62995 -25.70427 -24.89138 -23.48780 -22.25228 -20.96046 -20.61463 -19.28061 -18.60333 -17.31774 -17.21730 -16.49754 -16.17544 -15.66841 -15.31561 -15.00251 -14.78450 -14.64978 -14.22828 -14.04369 -13.68156 -13.35548 -13.18960 -12.92964 -12.77114 -12.66675 -12.32886 -12.11039 -11.97603 -11.86443 -11.66328 -11.56642 -11.45388 -11.08780 -10.94221 -10.73665 -10.25303 -9.72161 -8.29913 -8.03531 -6.33395 0.63565 0.70745 1.32419 1.35291 1.46942 2.26543 2.34874 2.75090 3.04185 3.41085 3.79865 3.93326 4.03735 4.07602 4.17522 4.26429 4.33547 4.43081 4.50666 4.61034 4.71324 4.74388 4.81204 4.89366 4.91924 4.96772 5.04598 5.09162 5.13953 5.19379 5.33657 5.38625 5.41259 5.43452 5.50269 5.61365 5.77997 5.83591 6.22830 6.32037 6.58636 6.71952 7.30811 7.44096 8.87800 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042966 B = 0.003873 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.528356 B = 7227.295069 C = 7524.350460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C 0.167 3.833 4 C -0.230 4.230 5 C 0.217 3.783 6 N -0.617 5.617 7 C 0.079 3.921 8 H 0.061 0.939 9 C -0.093 4.093 10 C -0.127 4.127 11 C 0.009 3.991 12 H 0.030 0.970 13 C -0.518 4.518 14 H 0.022 0.978 15 C 0.007 3.993 16 N -0.955 5.955 17 Si 0.950 3.050 18 H -0.263 1.263 19 H -0.289 1.289 20 H -0.241 1.241 21 C -0.085 4.085 22 C -0.308 4.308 23 C 0.159 3.841 24 N -0.596 5.596 25 H 0.433 0.567 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.266 0.734 37 H 0.045 0.955 38 H 0.033 0.967 39 H 0.131 0.869 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -22.605 24.376 33.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C 0.057 3.943 4 C -0.256 4.256 5 C 0.042 3.958 6 N -0.335 5.335 7 C -0.032 4.032 8 H 0.079 0.921 9 C -0.131 4.131 10 C -0.165 4.165 11 C -0.010 4.010 12 H 0.049 0.951 13 C -0.555 4.555 14 H 0.040 0.960 15 C -0.189 4.189 16 N -0.595 5.595 17 Si 0.773 3.227 18 H -0.188 1.188 19 H -0.216 1.216 20 H -0.165 1.165 21 C -0.123 4.123 22 C -0.337 4.337 23 C 0.031 3.969 24 N -0.205 5.205 25 H 0.272 0.728 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.148 0.852 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.068 -22.388 23.201 32.241 hybrid contribution 0.476 1.253 0.060 1.342 sum 0.408 -21.135 23.261 31.431 Atomic orbital electron populations 1.21781 0.93551 1.03231 1.02134 1.20818 0.96887 0.88238 1.06041 1.20260 0.93407 0.95547 0.85066 1.21266 1.13320 0.92990 0.98031 1.22111 0.90545 0.93495 0.89637 1.73128 1.23747 1.08798 1.27804 1.22488 0.93901 0.89501 0.97272 0.92116 1.22153 0.96783 0.95396 0.98785 1.22500 0.98167 0.95895 0.99930 1.19692 0.92661 0.93904 0.94749 0.95142 1.21405 1.09663 1.18314 1.06160 0.96012 1.25986 1.01603 0.96181 0.95105 1.70082 1.41938 1.28133 1.19387 0.85785 0.79393 0.76753 0.80736 1.18791 1.21594 1.16482 1.22155 0.97156 0.94970 0.98048 1.22537 1.15778 1.02418 0.92930 1.21888 0.91131 0.83417 1.00468 1.41028 1.58177 1.12420 1.08887 0.72823 0.92074 0.93760 0.90060 0.88617 0.87188 0.85300 0.93409 0.91161 0.93641 0.92051 0.92522 0.93636 0.94836 0.85169 0.77975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 71.98 0.71 -0.41 16 2 C -0.08 -0.55 6.09 29.85 0.18 -0.37 16 3 C 0.17 2.36 6.06 41.11 0.25 2.61 16 4 C -0.23 -5.75 9.89 23.71 0.23 -5.52 16 5 C 0.22 7.11 6.97 43.61 0.30 7.42 16 6 N -0.62 -25.82 10.40 -304.07 -3.16 -28.98 16 7 C 0.08 3.37 3.48 46.28 0.16 3.53 16 8 H 0.06 2.34 5.38 -2.38 -0.01 2.32 16 9 C -0.09 -4.01 6.51 31.67 0.21 -3.81 16 10 C -0.13 -6.00 4.47 31.32 0.14 -5.86 16 11 C 0.01 0.49 2.39 -10.81 -0.03 0.46 16 12 H 0.03 1.57 7.22 -2.38 -0.02 1.56 16 13 C -0.52 -32.98 8.93 25.60 0.23 -32.76 16 14 H 0.02 1.54 7.80 -2.91 -0.02 1.52 16 15 C 0.01 0.46 5.33 84.65 0.45 0.91 16 16 N -0.95 -63.90 13.96 21.45 0.30 -63.60 16 17 Si 0.95 47.51 24.58 68.60 1.69 49.20 16 18 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.24 -11.11 6.44 99.48 0.64 -10.47 16 21 C -0.09 -4.22 6.03 31.66 0.19 -4.03 16 22 C -0.31 -7.60 9.45 23.71 0.22 -7.38 16 23 C 0.16 2.01 11.13 83.24 0.93 2.94 16 24 N -0.60 -5.28 5.22 -183.65 -0.96 -6.24 16 25 H 0.43 -0.09 8.66 -92.71 -0.80 -0.90 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.10 0.69 8.10 -2.39 -0.02 0.67 16 30 H 0.11 0.04 8.06 -2.38 -0.02 0.02 16 31 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.04 2.33 6.41 -2.38 -0.02 2.32 16 35 H 0.06 2.58 7.39 -2.39 -0.02 2.56 16 36 H 0.27 16.51 8.31 -92.71 -0.77 15.74 16 37 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.03 1.85 7.69 -2.39 -0.02 1.83 16 39 H 0.13 3.41 5.99 -2.91 -0.02 3.40 16 40 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -86.67 317.39 2.21 -84.46 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.16 Total: 7.41 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 4.18 Total: -42.25 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -3.82 Total: -98.82 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.69 Total: 49.20 kcal Total: -86.67 2.21 -84.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450669088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.670 kcal (2) G-P(sol) polarization free energy of solvation -86.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds