Wall clock time and date at job start Mon Mar 30 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38221 * 119.62188 * 2 1 4 4 C 1.38635 * 119.16345 * 180.22729 * 3 2 1 5 5 C 1.50700 * 120.78906 * 179.79517 * 4 3 2 6 6 N 1.46901 * 109.47441 * 269.72001 * 5 4 3 7 7 C 1.46895 * 111.00071 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.53971 * 323.84059 * 7 6 5 9 9 C 1.54261 * 110.48837 * 86.45273 * 7 6 5 10 10 C 1.53876 * 106.59990 * 142.28620 * 9 7 6 11 11 C 1.54267 * 106.59870 * 0.02562 * 10 9 7 12 12 H 1.09004 * 110.48597 * 95.06674 * 11 10 9 13 13 C 1.50701 * 110.48772 * 217.70999 * 11 10 9 14 14 H 1.08001 * 119.99746 * 118.54331 * 13 11 10 15 15 C 1.37877 * 120.00009 * 298.54805 * 13 11 10 16 16 N 1.31515 * 119.99767 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99922 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47292 * 59.99716 * 17 15 13 19 19 H 1.48499 * 109.47185 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46976 * 299.99408 * 17 15 13 21 21 C 1.54888 * 110.48643 * 201.23001 * 7 6 5 22 22 C 1.38667 * 118.41904 * 359.52165 * 4 3 2 23 23 C 1.38178 * 119.16235 * 0.25589 * 22 4 3 24 24 N 1.31860 * 119.61959 * 179.74156 * 2 1 3 25 25 H 1.08994 * 109.46996 * 270.25919 * 1 2 3 26 26 H 1.08995 * 109.46789 * 30.25906 * 1 2 3 27 27 H 1.09002 * 109.47143 * 150.25141 * 1 2 3 28 28 H 1.07999 * 120.41990 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47167 * 149.71974 * 5 4 3 30 30 H 1.09001 * 109.47217 * 29.72099 * 5 4 3 31 31 H 1.00905 * 110.99775 * 303.95496 * 6 5 4 32 32 H 1.08998 * 110.03492 * 23.00495 * 9 7 6 33 33 H 1.08994 * 110.03470 * 261.57071 * 9 7 6 34 34 H 1.08995 * 110.03160 * 119.28453 * 10 9 7 35 35 H 1.08998 * 110.03319 * 240.71542 * 10 9 7 36 36 H 0.97000 * 119.99775 * 180.02562 * 16 15 13 37 37 H 1.09005 * 110.75648 * 321.69142 * 21 7 6 38 38 H 1.08999 * 110.75852 * 85.06073 * 21 7 6 39 39 H 1.08002 * 120.41916 * 180.22600 * 22 4 3 40 40 H 1.08001 * 119.61869 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5765 1.1905 -0.0048 5 6 4.3582 2.4789 -0.0096 6 7 4.6132 2.8918 -1.3961 7 6 5.3755 4.1467 -1.4399 8 1 5.0701 4.8082 -0.6292 9 6 6.8896 3.8618 -1.3629 10 6 7.5752 4.8718 -2.2996 11 6 6.4538 5.7358 -2.9127 12 1 6.3230 6.6538 -2.3396 13 6 6.7595 6.0515 -4.3542 14 1 6.0915 5.7162 -5.1338 15 6 7.8921 6.7682 -4.6778 16 7 8.7053 7.1768 -3.7284 17 14 8.2706 7.1601 -6.4646 18 1 7.1617 7.9619 -7.0412 19 1 9.5347 7.9352 -6.5443 20 1 8.4162 5.8950 -7.2287 21 6 5.1898 4.8463 -2.8093 22 6 4.2267 -0.0343 0.0007 23 6 3.4766 -1.1948 0.0054 24 7 2.1587 -1.1463 0.0052 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8876 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 1.6509 2.1373 -0.0004 29 1 5.3072 2.3300 0.5055 30 1 3.7854 3.2533 0.5006 31 1 5.0868 2.1633 -1.9091 32 1 7.0955 2.8445 -1.6958 33 1 7.2440 3.9997 -0.3415 34 1 8.2623 5.4999 -1.7327 35 1 8.1138 4.3447 -3.0871 36 1 9.5018 7.6813 -3.9560 37 1 5.1650 4.1144 -3.6167 38 1 4.2868 5.4567 -2.8120 39 1 5.3057 -0.0806 0.0009 40 1 3.9754 -2.1527 0.0101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527712171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:42 Heat of formation + Delta-G solvation = 12.070643 kcal Electronic energy + Delta-G solvation = -18694.164145 eV Core-core repulsion = 15893.470080 eV Total energy + Delta-G solvation = -2800.694065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37301 -37.94106 -35.14147 -33.00296 -32.61373 -31.36655 -28.08264 -27.80842 -27.21909 -24.93556 -23.40236 -23.08463 -20.95583 -19.65279 -19.02876 -16.67866 -16.52724 -16.24377 -15.58837 -15.23356 -14.68272 -14.51805 -14.18275 -13.87012 -13.57604 -13.19527 -12.74085 -12.54476 -12.42063 -12.35599 -12.01332 -11.64590 -11.60941 -11.11861 -10.94592 -10.68159 -10.55194 -10.19898 -9.88255 -9.68788 -9.58710 -9.51230 -9.10927 -9.02686 -8.72199 -8.36281 -8.06199 -5.98839 -4.01353 1.02663 1.15699 3.33281 3.37796 3.40679 3.64379 4.19345 4.38975 4.46992 4.56512 4.77479 4.99952 5.03333 5.22720 5.32220 5.38440 5.40012 5.41744 5.49681 5.61696 5.64134 5.71127 5.85132 5.86711 5.99027 6.18517 6.29037 6.45231 6.62535 6.62983 6.71865 6.82392 7.01942 7.12808 7.35254 7.45322 7.61747 7.73155 7.89177 7.92551 8.04683 8.49312 9.01630 9.62607 11.10755 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.003420 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.498587 B = 8184.931789 C = 8384.656000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.151 4.151 4 C -0.028 4.028 5 C 0.093 3.907 6 N -0.676 5.676 7 C 0.080 3.920 8 H 0.074 0.926 9 C -0.154 4.154 10 C -0.092 4.092 11 C 0.048 3.952 12 H 0.027 0.973 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.099 4.099 22 C -0.176 4.176 23 C 0.101 3.899 24 N -0.491 5.491 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.135 0.865 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.340 0.660 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.259 0.741 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.131 0.869 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 -12.737 9.586 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.015 4.015 3 C -0.172 4.172 4 C -0.036 4.036 5 C -0.036 4.036 6 N -0.306 5.306 7 C -0.029 4.029 8 H 0.092 0.908 9 C -0.193 4.193 10 C -0.131 4.131 11 C 0.029 3.971 12 H 0.045 0.955 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.137 4.137 22 C -0.196 4.196 23 C -0.056 4.056 24 N -0.202 5.202 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.153 0.847 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.158 0.842 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.149 0.851 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.311 -13.086 9.554 19.760 hybrid contribution 1.925 0.684 -0.671 2.150 sum -9.386 -12.401 8.883 17.911 Atomic orbital electron populations 1.20699 0.88946 1.03496 1.02883 1.21294 0.96982 0.88351 0.94917 1.21865 0.94233 0.99278 1.01782 1.20326 0.94037 0.95178 0.94088 1.20938 0.97650 0.92955 0.92029 1.60746 1.52718 1.06453 1.10729 1.22611 0.90717 0.89588 0.99996 0.90817 1.22965 0.96782 0.99866 0.99682 1.22002 0.98968 0.95661 0.96454 1.19453 0.88856 0.92892 0.95936 0.95489 1.21137 1.07467 1.34338 0.92155 0.92679 1.24986 0.96356 0.95704 0.96979 1.69966 1.13368 1.37846 1.31803 0.86710 0.77522 0.78420 0.85641 1.20291 1.21409 1.20331 1.22544 0.99387 0.98128 0.93691 1.22063 1.01411 0.93093 1.03055 1.22653 0.89419 0.98241 0.95317 1.67482 1.10041 1.29507 1.13125 0.90592 0.90607 0.90603 0.84710 0.94047 0.89989 0.84152 0.93456 0.93773 0.92791 0.93075 0.93108 0.92271 0.93281 0.85057 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.17 36.01 0.37 -0.50 16 2 C 0.12 1.40 6.78 -82.59 -0.56 0.84 16 3 C -0.15 -1.73 9.45 -39.44 -0.37 -2.10 16 4 C -0.03 -0.33 5.43 -104.32 -0.57 -0.89 16 5 C 0.09 1.14 5.71 -4.98 -0.03 1.11 16 6 N -0.68 -9.91 6.33 -106.24 -0.67 -10.59 16 7 C 0.08 1.37 3.16 -66.06 -0.21 1.16 16 8 H 0.07 1.24 7.88 -51.93 -0.41 0.83 16 9 C -0.15 -2.77 6.42 -25.61 -0.16 -2.94 16 10 C -0.09 -2.12 5.40 -25.61 -0.14 -2.26 16 11 C 0.05 1.17 2.80 -90.10 -0.25 0.92 16 12 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 13 C -0.51 -14.06 8.40 -34.44 -0.29 -14.35 16 14 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.33 -17.82 -0.09 1.60 16 16 N -0.89 -25.61 12.35 55.43 0.68 -24.93 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.10 -2.04 5.96 -24.73 -0.15 -2.19 16 22 C -0.18 -1.91 9.82 -39.44 -0.39 -2.30 16 23 C 0.10 1.10 11.18 -17.55 -0.20 0.90 16 24 N -0.49 -6.12 10.27 -9.48 -0.10 -6.21 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 31 H 0.34 4.96 8.14 -39.29 -0.32 4.64 16 32 H 0.05 0.80 7.57 -51.93 -0.39 0.40 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 1.33 7.94 -51.93 -0.41 0.92 16 35 H 0.05 1.26 7.83 -51.93 -0.41 0.86 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -29.41 328.39 -9.74 -39.15 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.54 Total: 2.29 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -3.04 Total: -20.99 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.09 Total: -41.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.41 -9.74 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527712171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.220 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds