Wall clock time and date at job start Mon Mar 30 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38221 * 119.62188 * 2 1 4 4 C 1.38635 * 119.16345 * 180.22729 * 3 2 1 5 5 C 1.50700 * 120.78906 * 179.79517 * 4 3 2 6 6 N 1.46901 * 109.47441 * 269.72001 * 5 4 3 7 7 C 1.46895 * 111.00071 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.53971 * 323.84059 * 7 6 5 9 9 C 1.54261 * 110.48837 * 86.45273 * 7 6 5 10 10 C 1.53876 * 106.59990 * 142.28620 * 9 7 6 11 11 C 1.54267 * 106.59870 * 0.02562 * 10 9 7 12 12 H 1.09004 * 110.48597 * 95.06674 * 11 10 9 13 13 C 1.50701 * 110.48772 * 217.70999 * 11 10 9 14 14 H 1.08001 * 119.99746 * 118.54331 * 13 11 10 15 15 C 1.37877 * 120.00009 * 298.54805 * 13 11 10 16 16 N 1.31515 * 119.99767 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99922 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47292 * 59.99716 * 17 15 13 19 19 H 1.48499 * 109.47185 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46976 * 299.99408 * 17 15 13 21 21 C 1.54888 * 110.48643 * 201.23001 * 7 6 5 22 22 C 1.38667 * 118.41904 * 359.52165 * 4 3 2 23 23 C 1.38178 * 119.16235 * 0.25589 * 22 4 3 24 24 N 1.31860 * 119.61959 * 179.74156 * 2 1 3 25 25 H 1.08994 * 109.46996 * 270.25919 * 1 2 3 26 26 H 1.08995 * 109.46789 * 30.25906 * 1 2 3 27 27 H 1.09002 * 109.47143 * 150.25141 * 1 2 3 28 28 H 1.07999 * 120.41990 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47167 * 149.71974 * 5 4 3 30 30 H 1.09001 * 109.47217 * 29.72099 * 5 4 3 31 31 H 1.00905 * 110.99775 * 303.95496 * 6 5 4 32 32 H 1.08998 * 110.03492 * 23.00495 * 9 7 6 33 33 H 1.08994 * 110.03470 * 261.57071 * 9 7 6 34 34 H 1.08995 * 110.03160 * 119.28453 * 10 9 7 35 35 H 1.08998 * 110.03319 * 240.71542 * 10 9 7 36 36 H 0.97000 * 119.99775 * 180.02562 * 16 15 13 37 37 H 1.09005 * 110.75648 * 321.69142 * 21 7 6 38 38 H 1.08999 * 110.75852 * 85.06073 * 21 7 6 39 39 H 1.08002 * 120.41916 * 180.22600 * 22 4 3 40 40 H 1.08001 * 119.61869 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5765 1.1905 -0.0048 5 6 4.3582 2.4789 -0.0096 6 7 4.6132 2.8918 -1.3961 7 6 5.3755 4.1467 -1.4399 8 1 5.0701 4.8082 -0.6292 9 6 6.8896 3.8618 -1.3629 10 6 7.5752 4.8718 -2.2996 11 6 6.4538 5.7358 -2.9127 12 1 6.3230 6.6538 -2.3396 13 6 6.7595 6.0515 -4.3542 14 1 6.0915 5.7162 -5.1338 15 6 7.8921 6.7682 -4.6778 16 7 8.7053 7.1768 -3.7284 17 14 8.2706 7.1601 -6.4646 18 1 7.1617 7.9619 -7.0412 19 1 9.5347 7.9352 -6.5443 20 1 8.4162 5.8950 -7.2287 21 6 5.1898 4.8463 -2.8093 22 6 4.2267 -0.0343 0.0007 23 6 3.4766 -1.1948 0.0054 24 7 2.1587 -1.1463 0.0052 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8876 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 1.6509 2.1373 -0.0004 29 1 5.3072 2.3300 0.5055 30 1 3.7854 3.2533 0.5006 31 1 5.0868 2.1633 -1.9091 32 1 7.0955 2.8445 -1.6958 33 1 7.2440 3.9997 -0.3415 34 1 8.2623 5.4999 -1.7327 35 1 8.1138 4.3447 -3.0871 36 1 9.5018 7.6813 -3.9560 37 1 5.1650 4.1144 -3.6167 38 1 4.2868 5.4567 -2.8120 39 1 5.3057 -0.0806 0.0009 40 1 3.9754 -2.1527 0.0101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527712171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:42 Heat of formation + Delta-G solvation = -5.069068 kcal Electronic energy + Delta-G solvation = -18694.907379 eV Core-core repulsion = 15893.470080 eV Total energy + Delta-G solvation = -2801.437299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20383 -39.43863 -36.44027 -34.52089 -33.58280 -32.74400 -29.83400 -28.80045 -28.42939 -26.39616 -25.02612 -23.95056 -21.85649 -21.10400 -20.89448 -18.33896 -17.51903 -17.38244 -16.68100 -16.59692 -16.27370 -15.72233 -15.42293 -15.11450 -14.53878 -14.34297 -14.09106 -13.99105 -13.47519 -13.32541 -13.17228 -13.00817 -12.94515 -12.74040 -12.51242 -12.38120 -12.19706 -11.85893 -11.57841 -11.34536 -11.01311 -10.74734 -10.56939 -10.47153 -10.39353 -9.81901 -9.27353 -8.11344 -6.20860 0.21966 0.29849 1.41335 1.42400 1.50022 2.43760 2.79390 3.19209 3.34579 3.47544 3.69042 3.85060 4.03810 4.06639 4.21071 4.24677 4.28389 4.43646 4.60905 4.69121 4.71474 4.76087 4.81110 4.86189 4.91087 5.02714 5.05273 5.15259 5.17781 5.23922 5.24684 5.42620 5.45584 5.46001 5.67205 5.83791 5.93828 5.99794 6.15096 6.39698 6.46910 6.90633 7.07737 7.46542 8.97162 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.003420 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.498587 B = 8184.931789 C = 8384.656000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.109 3.891 3 C -0.160 4.160 4 C -0.039 4.039 5 C 0.098 3.902 6 N -0.676 5.676 7 C 0.097 3.903 8 H 0.082 0.918 9 C -0.141 4.141 10 C -0.084 4.084 11 C 0.037 3.963 12 H -0.002 1.002 13 C -0.533 4.533 14 H 0.052 0.948 15 C 0.011 3.989 16 N -0.920 5.920 17 Si 0.951 3.049 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.091 4.091 22 C -0.178 4.178 23 C 0.092 3.908 24 N -0.514 5.514 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.342 0.658 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.025 0.975 36 H 0.259 0.741 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.148 0.852 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 -13.896 9.885 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.028 4.028 3 C -0.181 4.181 4 C -0.047 4.047 5 C -0.031 4.031 6 N -0.306 5.306 7 C -0.013 4.013 8 H 0.100 0.900 9 C -0.180 4.180 10 C -0.123 4.123 11 C 0.018 3.982 12 H 0.016 0.984 13 C -0.571 4.571 14 H 0.070 0.930 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.777 3.223 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.129 4.129 22 C -0.198 4.198 23 C -0.064 4.064 24 N -0.225 5.225 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.163 0.837 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.161 0.839 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.166 0.834 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.062 -14.260 9.857 21.119 hybrid contribution 2.131 1.034 -0.751 2.485 sum -9.931 -13.226 9.105 18.880 Atomic orbital electron populations 1.20763 0.87203 1.04031 1.03842 1.21744 0.98359 0.88186 0.94540 1.22050 0.94399 0.99791 1.01813 1.20359 0.94241 0.95227 0.94868 1.20935 0.98295 0.93424 0.90399 1.60619 1.51847 1.05576 1.12604 1.22300 0.90250 0.90775 0.97926 0.89978 1.22848 0.96892 0.99014 0.99296 1.21776 0.98099 0.96040 0.96335 1.19453 0.91671 0.92801 0.94281 0.98429 1.21538 1.07540 1.34400 0.93627 0.93020 1.25760 0.96288 0.95673 1.01042 1.70092 1.13704 1.38469 1.33677 0.85715 0.77401 0.78378 0.80799 1.19641 1.21054 1.19645 1.22365 0.97267 0.97513 0.95796 1.22271 1.02332 0.92739 1.02475 1.23095 0.89205 0.99438 0.94685 1.67537 1.10905 1.30162 1.13899 0.89360 0.89348 0.90762 0.83730 0.93079 0.89417 0.83880 0.91782 0.91940 0.95388 0.95600 0.93184 0.92924 0.93146 0.83379 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 10.17 71.24 0.72 -0.80 16 2 C 0.11 2.32 6.78 42.55 0.29 2.61 16 3 C -0.16 -3.36 9.45 22.36 0.21 -3.15 16 4 C -0.04 -0.82 5.43 -19.67 -0.11 -0.93 16 5 C 0.10 2.12 5.71 85.56 0.49 2.61 16 6 N -0.68 -18.14 6.33 -490.04 -3.10 -21.24 16 7 C 0.10 3.15 3.16 45.99 0.15 3.30 16 8 H 0.08 2.57 7.88 -2.39 -0.02 2.55 16 9 C -0.14 -4.85 6.42 31.32 0.20 -4.65 16 10 C -0.08 -3.90 5.40 31.32 0.17 -3.73 16 11 C 0.04 1.85 2.80 -10.46 -0.03 1.82 16 12 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 13 C -0.53 -29.76 8.40 25.60 0.22 -29.54 16 14 H 0.05 2.84 7.77 -2.91 -0.02 2.82 16 15 C 0.01 0.61 5.33 84.65 0.45 1.07 16 16 N -0.92 -54.04 12.35 21.45 0.26 -53.78 16 17 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 C -0.09 -3.70 5.96 31.89 0.19 -3.51 16 22 C -0.18 -3.44 9.82 22.36 0.22 -3.22 16 23 C 0.09 1.84 11.18 84.67 0.95 2.78 16 24 N -0.51 -12.03 10.27 -183.89 -1.89 -13.92 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.05 1.04 8.08 -2.38 -0.02 1.02 16 30 H 0.09 1.82 8.04 -2.39 -0.02 1.80 16 31 H 0.34 9.07 8.14 -89.69 -0.73 8.34 16 32 H 0.06 2.00 7.57 -2.39 -0.02 1.98 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.03 1.40 7.94 -2.39 -0.02 1.38 16 35 H 0.03 1.29 7.83 -2.39 -0.02 1.27 16 36 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.05 2.18 8.05 -2.38 -0.02 2.17 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -63.73 328.39 1.69 -62.03 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.28 Total: 16.14 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 4.11 Total: -35.35 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -4.73 Total: -88.94 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -63.73 1.69 -62.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527712171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.965 kcal (2) G-P(sol) polarization free energy of solvation -63.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds