Wall clock time and date at job start Mon Mar 30 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47236 * 300.00557 * 3 2 1 6 6 H 1.48500 * 109.46924 * 60.00320 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.78933 * 55.79747 * 13 12 11 15 15 C 1.53433 * 109.80062 * 176.65680 * 13 12 11 16 16 C 1.52854 * 108.84259 * 182.79635 * 15 13 12 17 17 C 1.50601 * 110.47695 * 308.65812 * 16 15 13 18 18 C 1.38498 * 118.91900 * 200.48441 * 17 16 15 19 19 C 1.38130 * 120.30707 * 180.18479 * 18 17 16 20 20 C 1.38315 * 120.15342 * 0.02562 * 19 18 17 21 21 C 1.38021 * 119.91334 * 359.94267 * 20 19 18 22 22 C 1.38603 * 121.51026 * 20.57614 * 17 16 15 23 23 N 1.39921 * 120.83780 * 359.67971 * 22 17 16 24 24 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 31 31 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 32 32 H 1.09000 * 109.57394 * 302.60497 * 15 13 12 33 33 H 1.09000 * 109.57823 * 62.98809 * 15 13 12 34 34 H 1.08999 * 109.29954 * 188.35074 * 16 15 13 35 35 H 1.08997 * 109.30773 * 68.96934 * 16 15 13 36 36 H 1.08002 * 119.85165 * 0.20784 * 18 17 16 37 37 H 1.07994 * 119.92702 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.04064 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.98286 * 180.02562 * 21 20 19 40 40 H 0.96997 * 120.53598 * 193.35214 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 6 1.8009 -7.3879 -0.0018 14 1 1.1178 -7.4373 -0.8498 15 6 2.8200 -8.5318 -0.0866 16 6 2.0667 -9.8600 -0.1556 17 6 1.0570 -9.9515 0.9581 18 6 0.5872 -11.1986 1.3354 19 6 -0.3420 -11.3155 2.3507 20 6 -0.8101 -10.1861 2.9976 21 6 -0.3466 -8.9396 2.6284 22 6 0.5903 -8.8195 1.6077 23 7 1.0505 -7.5471 1.2513 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8406 -3.5486 0.7807 28 1 0.8801 -4.9817 0.8886 29 1 0.8807 -4.9812 -0.8913 30 1 3.1550 -5.9681 -0.8918 31 1 3.1552 -5.9691 0.8881 32 1 3.4306 -8.4113 -0.9814 33 1 3.4577 -8.5191 0.7973 34 1 2.7769 -10.6820 -0.0665 35 1 1.5533 -9.9338 -1.1142 36 1 0.9492 -12.0838 0.8336 37 1 -0.7045 -12.2909 2.6396 38 1 -1.5369 -10.2796 3.7910 39 1 -0.7109 -8.0570 3.1330 40 1 0.8767 -6.7825 1.8222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568382719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:53 Heat of formation + Delta-G solvation = 7.654127 kcal Electronic energy + Delta-G solvation = -18584.786144 eV Core-core repulsion = 15783.900564 eV Total energy + Delta-G solvation = -2800.885580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14343 -37.27359 -35.30285 -33.41587 -32.79231 -31.44621 -29.65968 -28.47664 -26.23045 -24.37385 -22.85405 -22.44782 -21.41610 -21.00937 -19.58804 -17.35251 -16.45435 -16.32750 -15.77894 -14.90658 -14.71516 -14.54001 -14.25177 -13.92466 -13.79891 -13.36624 -13.17881 -12.80215 -12.66483 -12.33178 -12.11664 -11.83173 -11.44476 -11.27535 -11.11220 -10.89508 -10.83535 -10.74026 -10.55368 -10.46226 -9.96613 -9.86612 -9.18500 -8.74509 -8.51192 -7.38694 -7.33066 -6.05894 -4.08139 1.37782 1.60812 3.29233 3.36474 3.41541 3.46375 3.82317 4.39901 4.61953 4.63642 4.80487 4.93049 5.04755 5.13190 5.24619 5.30013 5.30802 5.42596 5.47592 5.54202 5.61021 5.74793 5.79626 5.82327 5.90655 5.98313 6.03733 6.16531 6.28850 6.37791 6.44923 6.49660 6.60246 6.85915 7.20893 7.36567 7.38768 7.75430 7.78982 8.09313 8.34356 8.57149 9.01366 9.57060 11.05281 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038762 B = 0.003209 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.187786 B = 8722.937092 C = 9268.850671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.691 5.691 11 C 0.060 3.940 12 C -0.122 4.122 13 C 0.154 3.846 14 H 0.068 0.932 15 C -0.132 4.132 16 C -0.071 4.071 17 C -0.158 4.158 18 C -0.078 4.078 19 C -0.182 4.182 20 C -0.079 4.079 21 C -0.194 4.194 22 C 0.224 3.776 23 N -0.743 5.743 24 H 0.261 0.739 25 H 0.027 0.973 26 H -0.015 1.015 27 H 0.328 0.672 28 H 0.015 0.985 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -22.114 2.922 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.321 5.321 11 C -0.070 4.070 12 C -0.160 4.160 13 C 0.049 3.951 14 H 0.086 0.914 15 C -0.170 4.170 16 C -0.108 4.108 17 C -0.163 4.163 18 C -0.096 4.096 19 C -0.202 4.202 20 C -0.098 4.098 21 C -0.217 4.217 22 C 0.120 3.880 23 N -0.375 5.375 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.003 0.997 27 H 0.144 0.856 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.005 -21.939 2.042 22.125 hybrid contribution -0.188 1.219 1.192 1.715 sum 1.817 -20.721 3.234 21.050 Atomic orbital electron populations 1.69973 1.06107 1.26730 1.50920 1.25008 0.94892 0.99444 0.95311 0.86417 0.80053 0.83270 0.77531 1.19632 1.20955 1.21074 1.21226 0.93553 0.90234 1.50313 0.91896 1.19556 0.90589 0.87428 0.95744 1.60664 1.21261 1.01328 1.48846 1.21870 0.95163 0.90292 0.99679 1.21845 0.98610 0.92177 1.03417 1.21155 0.92584 0.94837 0.86533 0.91424 1.21922 0.97874 0.94348 1.02876 1.20290 0.96105 0.97857 0.96513 1.19312 1.02677 0.91991 1.02340 1.20826 0.96347 0.96046 0.96422 1.20796 1.01540 0.98224 0.99620 1.20842 0.98379 0.92084 0.98515 1.20719 1.01109 0.98201 1.01653 1.17639 0.91645 0.85465 0.93242 1.45067 1.61138 1.06446 1.24802 0.92932 0.95447 0.99674 0.85606 0.96702 0.91741 0.89665 0.91668 0.90405 0.91259 0.90988 0.91212 0.86580 0.86778 0.86465 0.86336 0.76132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.10 5.44 -4.98 -0.03 5.07 16 10 N -0.69 -14.61 6.49 -115.06 -0.75 -15.36 16 11 C 0.06 1.02 5.56 -3.83 -0.02 1.00 16 12 C -0.12 -1.59 5.10 -26.74 -0.14 -1.73 16 13 C 0.15 1.81 2.92 -67.48 -0.20 1.61 16 14 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 15 C -0.13 -1.32 5.42 -26.58 -0.14 -1.47 16 16 C -0.07 -0.69 5.78 -28.01 -0.16 -0.85 16 17 C -0.16 -1.84 5.76 -104.44 -0.60 -2.44 16 18 C -0.08 -0.82 9.66 -39.53 -0.38 -1.20 16 19 C -0.18 -1.86 10.04 -39.59 -0.40 -2.26 16 20 C -0.08 -0.85 10.05 -39.63 -0.40 -1.25 16 21 C -0.19 -2.31 9.88 -39.35 -0.39 -2.70 16 22 C 0.22 2.81 6.47 -83.72 -0.54 2.27 16 23 N -0.74 -9.15 5.47 -51.66 -0.28 -9.44 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 27 H 0.33 6.59 8.72 -39.29 -0.34 6.24 16 28 H 0.01 0.25 6.93 -51.93 -0.36 -0.11 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.40 4.96 7.39 -40.82 -0.30 4.66 16 LS Contribution 325.75 15.07 4.91 4.91 Total: -1.00 -30.54 325.75 -10.69 -41.22 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.47 Total: 5.65 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -3.82 Total: -17.44 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.29 Total: -51.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.54 -10.69 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568382719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.878 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds