Wall clock time and date at job start Mon Mar 30 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47236 * 300.00557 * 3 2 1 6 6 H 1.48500 * 109.46924 * 60.00320 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.78933 * 55.79747 * 13 12 11 15 15 C 1.53433 * 109.80062 * 176.65680 * 13 12 11 16 16 C 1.52854 * 108.84259 * 182.79635 * 15 13 12 17 17 C 1.50601 * 110.47695 * 308.65812 * 16 15 13 18 18 C 1.38498 * 118.91900 * 200.48441 * 17 16 15 19 19 C 1.38130 * 120.30707 * 180.18479 * 18 17 16 20 20 C 1.38315 * 120.15342 * 0.02562 * 19 18 17 21 21 C 1.38021 * 119.91334 * 359.94267 * 20 19 18 22 22 C 1.38603 * 121.51026 * 20.57614 * 17 16 15 23 23 N 1.39921 * 120.83780 * 359.67971 * 22 17 16 24 24 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 31 31 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 32 32 H 1.09000 * 109.57394 * 302.60497 * 15 13 12 33 33 H 1.09000 * 109.57823 * 62.98809 * 15 13 12 34 34 H 1.08999 * 109.29954 * 188.35074 * 16 15 13 35 35 H 1.08997 * 109.30773 * 68.96934 * 16 15 13 36 36 H 1.08002 * 119.85165 * 0.20784 * 18 17 16 37 37 H 1.07994 * 119.92702 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.04064 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.98286 * 180.02562 * 21 20 19 40 40 H 0.96997 * 120.53598 * 193.35214 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 6 1.8009 -7.3879 -0.0018 14 1 1.1178 -7.4373 -0.8498 15 6 2.8200 -8.5318 -0.0866 16 6 2.0667 -9.8600 -0.1556 17 6 1.0570 -9.9515 0.9581 18 6 0.5872 -11.1986 1.3354 19 6 -0.3420 -11.3155 2.3507 20 6 -0.8101 -10.1861 2.9976 21 6 -0.3466 -8.9396 2.6284 22 6 0.5903 -8.8195 1.6077 23 7 1.0505 -7.5471 1.2513 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8406 -3.5486 0.7807 28 1 0.8801 -4.9817 0.8886 29 1 0.8807 -4.9812 -0.8913 30 1 3.1550 -5.9681 -0.8918 31 1 3.1552 -5.9691 0.8881 32 1 3.4306 -8.4113 -0.9814 33 1 3.4577 -8.5191 0.7973 34 1 2.7769 -10.6820 -0.0665 35 1 1.5533 -9.9338 -1.1142 36 1 0.9492 -12.0838 0.8336 37 1 -0.7045 -12.2909 2.6396 38 1 -1.5369 -10.2796 3.7910 39 1 -0.7109 -8.0570 3.1330 40 1 0.8767 -6.7825 1.8222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568382719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:53 Heat of formation + Delta-G solvation = -11.183088 kcal Electronic energy + Delta-G solvation = -18585.602987 eV Core-core repulsion = 15783.900564 eV Total energy + Delta-G solvation = -2801.702423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99752 -38.34407 -36.84042 -34.76465 -34.20197 -32.76085 -30.56336 -29.78615 -27.88312 -25.55676 -24.04861 -23.35383 -23.12729 -22.23713 -20.43770 -18.58628 -18.22320 -17.32449 -16.77099 -16.61085 -16.26169 -15.51614 -15.41981 -15.06679 -14.80722 -14.55877 -14.42925 -14.00710 -13.84201 -13.61599 -13.52745 -13.18440 -12.83314 -12.69167 -12.55116 -12.23809 -12.07226 -12.05785 -11.91561 -11.56475 -11.51219 -11.17618 -10.82912 -10.69423 -9.56551 -9.17455 -8.25769 -8.25101 -6.37114 0.54742 0.76302 1.40236 1.41077 1.55154 2.38355 2.54841 2.98733 3.08077 3.41678 3.79110 3.91026 3.97493 4.12836 4.23438 4.27978 4.35772 4.42691 4.52168 4.64260 4.66940 4.70126 4.79326 4.86842 4.99473 5.05650 5.09532 5.13611 5.17811 5.25094 5.29458 5.37350 5.46662 5.59106 5.68538 5.78333 5.98580 6.05166 6.39657 6.49488 6.69097 6.83914 6.86230 7.34334 8.86613 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038762 B = 0.003209 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.187786 B = 8722.937092 C = 9268.850671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.688 5.688 11 C 0.062 3.938 12 C -0.105 4.105 13 C 0.158 3.842 14 H 0.060 0.940 15 C -0.126 4.126 16 C -0.069 4.069 17 C -0.172 4.172 18 C -0.083 4.083 19 C -0.185 4.185 20 C -0.088 4.088 21 C -0.213 4.213 22 C 0.201 3.799 23 N -0.750 5.750 24 H 0.265 0.735 25 H -0.003 1.003 26 H -0.041 1.041 27 H 0.336 0.664 28 H 0.014 0.986 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 -23.192 2.860 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.319 5.319 11 C -0.068 4.068 12 C -0.143 4.143 13 C 0.052 3.948 14 H 0.078 0.922 15 C -0.164 4.164 16 C -0.106 4.106 17 C -0.177 4.177 18 C -0.102 4.102 19 C -0.205 4.205 20 C -0.106 4.106 21 C -0.236 4.236 22 C 0.098 3.902 23 N -0.382 5.382 24 H 0.074 0.926 25 H 0.016 0.984 26 H -0.023 1.023 27 H 0.153 0.847 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.413 -23.055 1.982 23.391 hybrid contribution -0.693 1.462 1.235 2.035 sum 2.720 -21.593 3.218 22.001 Atomic orbital electron populations 1.70102 1.07901 1.28023 1.51528 1.26005 0.95815 1.03578 0.94509 0.85240 0.78962 0.78056 0.77769 1.18474 1.20359 1.20276 1.21587 0.93886 0.91361 1.50603 0.91555 1.19205 0.90678 0.89142 0.93039 1.60534 1.20472 1.01595 1.49273 1.21925 0.96117 0.89694 0.99044 1.21683 0.97469 0.91143 1.04031 1.21103 0.92790 0.94703 0.86160 0.92217 1.21887 0.97339 0.93676 1.03511 1.20332 0.96072 0.98172 0.96058 1.19644 1.03139 0.92100 1.02789 1.21164 0.96097 0.96480 0.96410 1.21149 1.01072 0.99070 0.99169 1.21135 0.98641 0.91819 0.99023 1.20901 1.01640 0.98918 1.02091 1.17898 0.92448 0.85795 0.94095 1.45084 1.61670 1.06472 1.24926 0.92579 0.98450 1.02312 0.84698 0.96822 0.92906 0.88943 0.91036 0.88631 0.91668 0.89155 0.90706 0.84257 0.84520 0.84676 0.86498 0.76654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 3 Si 0.98 44.40 29.54 68.60 2.03 46.43 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -30.88 9.32 25.60 0.24 -30.64 16 8 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.29 5.44 85.55 0.47 11.76 16 10 N -0.69 -29.47 6.49 -517.93 -3.36 -32.83 16 11 C 0.06 2.13 5.56 86.30 0.48 2.61 16 12 C -0.11 -2.65 5.10 30.59 0.16 -2.50 16 13 C 0.16 3.59 2.92 45.05 0.13 3.72 16 14 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 15 C -0.13 -2.29 5.42 30.69 0.17 -2.13 16 16 C -0.07 -1.21 5.78 29.77 0.17 -1.04 16 17 C -0.17 -3.76 5.76 -19.75 -0.11 -3.87 16 18 C -0.08 -1.57 9.66 22.31 0.22 -1.36 16 19 C -0.18 -3.43 10.04 22.26 0.22 -3.21 16 20 C -0.09 -1.79 10.05 22.24 0.22 -1.56 16 21 C -0.21 -5.09 9.88 22.42 0.22 -4.86 16 22 C 0.20 4.99 6.47 38.14 0.25 5.24 16 23 N -0.75 -18.54 5.47 -317.34 -1.74 -20.28 16 24 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 27 H 0.34 13.48 8.72 -89.69 -0.78 12.70 16 28 H 0.01 0.48 6.93 -2.39 -0.02 0.46 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.12 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.40 10.12 7.39 -92.71 -0.68 9.43 16 Total: -1.00 -65.88 325.75 0.06 -65.83 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.44 Total: 25.13 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.29 Total: -27.43 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.81 Total: -109.95 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.88 0.06 -65.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568382719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.643 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds