Wall clock time and date at job start Mon Mar 30 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46924 * 299.99943 * 3 2 1 6 6 H 1.48500 * 109.47051 * 59.99293 * 3 2 1 7 7 C 1.37877 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99778 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46781 * 180.02562 * 9 7 2 11 11 C 1.46892 * 110.99752 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47232 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.82905 * 304.17988 * 13 12 11 15 15 C 1.53426 * 109.79303 * 183.35471 * 13 12 11 16 16 C 1.52848 * 108.84264 * 177.23846 * 15 13 12 17 17 C 1.50603 * 110.47839 * 51.37192 * 16 15 13 18 18 C 1.38497 * 118.92405 * 159.49661 * 17 16 15 19 19 C 1.38130 * 120.30159 * 179.68462 * 18 17 16 20 20 C 1.38302 * 120.15861 * 359.95057 * 19 18 17 21 21 C 1.38031 * 119.91611 * 0.12268 * 20 19 18 22 22 C 1.38604 * 121.49962 * 339.29651 * 17 16 15 23 23 N 1.39916 * 120.84183 * 0.48587 * 22 17 16 24 24 H 0.96997 * 120.00377 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47182 * 60.00404 * 9 7 2 26 26 H 1.08998 * 109.47133 * 299.99487 * 9 7 2 27 27 H 1.00905 * 110.99773 * 56.04909 * 10 9 7 28 28 H 1.09000 * 109.47047 * 60.00381 * 11 10 9 29 29 H 1.08999 * 109.47920 * 300.00012 * 11 10 9 30 30 H 1.09000 * 109.46787 * 60.00349 * 12 11 10 31 31 H 1.08999 * 109.47242 * 299.99890 * 12 11 10 32 32 H 1.08992 * 109.57671 * 297.03881 * 15 13 12 33 33 H 1.09002 * 109.57473 * 57.42908 * 15 13 12 34 34 H 1.09004 * 109.30727 * 291.06552 * 16 15 13 35 35 H 1.08997 * 109.30155 * 171.68157 * 16 15 13 36 36 H 1.07998 * 119.85328 * 359.66171 * 18 17 16 37 37 H 1.07997 * 119.91759 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.04413 * 180.12393 * 20 19 18 39 39 H 1.07997 * 119.98482 * 179.97438 * 21 20 19 40 40 H 0.97000 * 120.53686 * 166.56354 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5055 -4.9069 0.0024 12 6 2.5305 -6.0429 0.0031 13 6 1.8012 -7.3880 0.0031 14 1 1.1182 -7.4382 0.8511 15 6 2.8204 -8.5316 0.0882 16 6 2.0673 -9.8599 0.1563 17 6 1.0589 -9.9517 -0.9584 18 6 0.5899 -11.1988 -1.3365 19 6 -0.3402 -11.3154 -2.3511 20 6 -0.8104 -10.1859 -2.9959 21 6 -0.3471 -8.9392 -2.6264 22 6 0.5908 -8.8194 -1.6066 23 7 1.0509 -7.5471 -1.2501 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8400 -3.5482 0.7837 28 1 0.8811 -4.9821 -0.8878 29 1 0.8802 -4.9809 0.8921 30 1 3.1553 -5.9680 0.8931 31 1 3.1554 -5.9689 -0.8869 32 1 3.4585 -8.5186 -0.7953 33 1 3.4304 -8.4112 0.9835 34 1 1.5528 -9.9338 1.1145 35 1 2.7778 -10.6818 0.0680 36 1 0.9533 -12.0842 -0.8361 37 1 -0.7014 -12.2910 -2.6411 38 1 -1.5391 -10.2791 -3.7876 39 1 -0.7132 -8.0565 -3.1295 40 1 0.8770 -6.7823 -1.8209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568382720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:56 Heat of formation + Delta-G solvation = 7.606707 kcal Electronic energy + Delta-G solvation = -18580.386390 eV Core-core repulsion = 15779.498754 eV Total energy + Delta-G solvation = -2800.887636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12990 -37.26248 -35.30496 -33.40553 -32.79150 -31.44012 -29.64988 -28.46926 -26.22061 -24.37951 -22.84672 -22.43272 -21.41043 -21.00202 -19.58991 -17.31050 -16.45517 -16.34915 -15.76282 -14.98220 -14.68538 -14.55866 -14.22828 -13.82386 -13.59816 -13.36860 -13.24880 -13.07944 -12.52884 -12.35102 -12.11777 -11.78046 -11.44876 -11.27224 -11.09410 -10.94608 -10.80877 -10.73936 -10.56163 -10.44782 -9.95566 -9.85113 -9.18734 -8.73101 -8.51280 -7.35874 -7.34238 -6.05886 -4.08157 1.39245 1.62401 3.29219 3.36450 3.41526 3.48118 3.83721 4.39876 4.62412 4.63571 4.80867 4.94224 5.06046 5.16407 5.22106 5.30155 5.33323 5.43827 5.47075 5.53952 5.59091 5.73235 5.79667 5.85009 5.92311 5.97685 6.06469 6.14866 6.30245 6.36190 6.45591 6.51144 6.61686 6.87638 7.20787 7.37439 7.40001 7.75403 7.81900 8.09220 8.34239 8.57065 9.01366 9.57064 11.05293 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038669 B = 0.003210 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.925376 B = 8721.934080 C = 9274.394603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.691 5.691 11 C 0.060 3.940 12 C -0.123 4.123 13 C 0.155 3.845 14 H 0.066 0.934 15 C -0.132 4.132 16 C -0.070 4.070 17 C -0.159 4.159 18 C -0.078 4.078 19 C -0.182 4.182 20 C -0.079 4.079 21 C -0.194 4.194 22 C 0.224 3.776 23 N -0.742 5.742 24 H 0.261 0.739 25 H 0.027 0.973 26 H -0.014 1.014 27 H 0.328 0.672 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -22.086 -1.341 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.321 5.321 11 C -0.071 4.071 12 C -0.161 4.161 13 C 0.049 3.951 14 H 0.083 0.917 15 C -0.171 4.171 16 C -0.107 4.107 17 C -0.164 4.164 18 C -0.097 4.097 19 C -0.202 4.202 20 C -0.098 4.098 21 C -0.216 4.216 22 C 0.120 3.880 23 N -0.374 5.374 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.004 0.996 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.992 -21.910 -1.847 22.078 hybrid contribution -0.182 1.214 0.627 1.378 sum 1.810 -20.696 -1.221 20.811 Atomic orbital electron populations 1.69971 1.06107 1.26731 1.50923 1.25006 0.94890 0.99442 0.95312 0.86420 0.80055 0.83275 0.77533 1.19630 1.20959 1.21068 1.21225 0.93554 0.90230 1.50311 0.91892 1.19557 0.90596 0.87441 0.95745 1.60687 1.21295 1.01306 1.48835 1.21855 0.95190 0.90351 0.99663 1.21845 0.98637 0.92183 1.03436 1.21140 0.92536 0.94830 0.86556 0.91660 1.21922 0.97891 0.94373 1.02865 1.20285 0.96125 0.97845 0.96480 1.19305 1.02705 0.92010 1.02379 1.20819 0.96359 0.96026 0.96446 1.20790 1.01549 0.98219 0.99656 1.20843 0.98377 0.92083 0.98502 1.20730 1.01052 0.98225 1.01626 1.17640 0.91621 0.85456 0.93236 1.45050 1.61039 1.06513 1.24750 0.92931 0.95493 0.99632 0.85545 0.92104 0.96334 0.90753 0.90540 0.91134 0.90543 0.91292 0.90995 0.86612 0.86797 0.86457 0.86251 0.75916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.65 9.32 -34.44 -0.32 -14.98 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.09 5.44 -4.97 -0.03 5.07 16 10 N -0.69 -14.62 6.49 -115.06 -0.75 -15.36 16 11 C 0.06 1.01 5.56 -3.83 -0.02 0.99 16 12 C -0.12 -1.60 5.10 -26.73 -0.14 -1.74 16 13 C 0.15 1.82 2.92 -67.48 -0.20 1.63 16 14 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 15 C -0.13 -1.33 5.42 -26.59 -0.14 -1.47 16 16 C -0.07 -0.69 5.78 -28.01 -0.16 -0.85 16 17 C -0.16 -1.86 5.76 -104.44 -0.60 -2.46 16 18 C -0.08 -0.82 9.66 -39.53 -0.38 -1.20 16 19 C -0.18 -1.88 10.04 -39.60 -0.40 -2.28 16 20 C -0.08 -0.85 10.05 -39.63 -0.40 -1.25 16 21 C -0.19 -2.33 9.88 -39.35 -0.39 -2.71 16 22 C 0.22 2.84 6.48 -83.72 -0.54 2.30 16 23 N -0.74 -9.26 5.47 -51.65 -0.28 -9.54 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 27 H 0.33 6.58 8.72 -39.29 -0.34 6.24 16 28 H 0.06 1.05 6.92 -51.93 -0.36 0.70 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.11 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.40 5.09 7.39 -40.82 -0.30 4.79 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -30.58 325.74 -10.69 -41.27 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.47 Total: 5.76 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.82 Total: -17.48 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.29 Total: -51.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.58 -10.69 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568382720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.877 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds