Wall clock time and date at job start Mon Mar 30 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46924 * 299.99943 * 3 2 1 6 6 H 1.48500 * 109.47051 * 59.99293 * 3 2 1 7 7 C 1.37877 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99778 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46781 * 180.02562 * 9 7 2 11 11 C 1.46892 * 110.99752 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47232 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.82905 * 304.17988 * 13 12 11 15 15 C 1.53426 * 109.79303 * 183.35471 * 13 12 11 16 16 C 1.52848 * 108.84264 * 177.23846 * 15 13 12 17 17 C 1.50603 * 110.47839 * 51.37192 * 16 15 13 18 18 C 1.38497 * 118.92405 * 159.49661 * 17 16 15 19 19 C 1.38130 * 120.30159 * 179.68462 * 18 17 16 20 20 C 1.38302 * 120.15861 * 359.95057 * 19 18 17 21 21 C 1.38031 * 119.91611 * 0.12268 * 20 19 18 22 22 C 1.38604 * 121.49962 * 339.29651 * 17 16 15 23 23 N 1.39916 * 120.84183 * 0.48587 * 22 17 16 24 24 H 0.96997 * 120.00377 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47182 * 60.00404 * 9 7 2 26 26 H 1.08998 * 109.47133 * 299.99487 * 9 7 2 27 27 H 1.00905 * 110.99773 * 56.04909 * 10 9 7 28 28 H 1.09000 * 109.47047 * 60.00381 * 11 10 9 29 29 H 1.08999 * 109.47920 * 300.00012 * 11 10 9 30 30 H 1.09000 * 109.46787 * 60.00349 * 12 11 10 31 31 H 1.08999 * 109.47242 * 299.99890 * 12 11 10 32 32 H 1.08992 * 109.57671 * 297.03881 * 15 13 12 33 33 H 1.09002 * 109.57473 * 57.42908 * 15 13 12 34 34 H 1.09004 * 109.30727 * 291.06552 * 16 15 13 35 35 H 1.08997 * 109.30155 * 171.68157 * 16 15 13 36 36 H 1.07998 * 119.85328 * 359.66171 * 18 17 16 37 37 H 1.07997 * 119.91759 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.04413 * 180.12393 * 20 19 18 39 39 H 1.07997 * 119.98482 * 179.97438 * 21 20 19 40 40 H 0.97000 * 120.53686 * 166.56354 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5055 -4.9069 0.0024 12 6 2.5305 -6.0429 0.0031 13 6 1.8012 -7.3880 0.0031 14 1 1.1182 -7.4382 0.8511 15 6 2.8204 -8.5316 0.0882 16 6 2.0673 -9.8599 0.1563 17 6 1.0589 -9.9517 -0.9584 18 6 0.5899 -11.1988 -1.3365 19 6 -0.3402 -11.3154 -2.3511 20 6 -0.8104 -10.1859 -2.9959 21 6 -0.3471 -8.9392 -2.6264 22 6 0.5908 -8.8194 -1.6066 23 7 1.0509 -7.5471 -1.2501 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8400 -3.5482 0.7837 28 1 0.8811 -4.9821 -0.8878 29 1 0.8802 -4.9809 0.8921 30 1 3.1553 -5.9680 0.8931 31 1 3.1554 -5.9689 -0.8869 32 1 3.4585 -8.5186 -0.7953 33 1 3.4304 -8.4112 0.9835 34 1 1.5528 -9.9338 1.1145 35 1 2.7778 -10.6818 0.0680 36 1 0.9533 -12.0842 -0.8361 37 1 -0.7014 -12.2910 -2.6411 38 1 -1.5391 -10.2791 -3.7876 39 1 -0.7132 -8.0565 -3.1295 40 1 0.8770 -6.7823 -1.8209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568382720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:55 Heat of formation + Delta-G solvation = -11.300689 kcal Electronic energy + Delta-G solvation = -18581.206276 eV Core-core repulsion = 15779.498754 eV Total energy + Delta-G solvation = -2801.707522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98899 -38.33697 -36.84377 -34.76465 -34.19701 -32.75678 -30.55890 -29.78437 -27.87432 -25.56137 -24.05211 -23.35816 -23.10295 -22.23158 -20.44190 -18.58156 -18.19367 -17.32923 -16.87335 -16.52364 -16.31527 -15.51720 -15.30815 -15.01783 -14.68568 -14.66025 -14.49306 -13.99330 -13.95456 -13.57303 -13.52722 -13.18835 -12.81018 -12.68064 -12.53905 -12.23559 -12.07238 -12.04634 -11.96897 -11.52728 -11.50795 -11.17843 -10.81572 -10.69657 -9.55839 -9.17734 -8.25346 -8.24614 -6.37118 0.55450 0.77136 1.40271 1.41025 1.55154 2.38336 2.56102 2.99391 3.08103 3.41287 3.78305 3.96468 4.00606 4.09630 4.17426 4.28090 4.37733 4.47541 4.50394 4.63035 4.68253 4.70241 4.82290 4.84038 5.01512 5.04947 5.05410 5.15604 5.17313 5.24692 5.29682 5.38690 5.47458 5.59222 5.69178 5.78974 5.98568 6.06257 6.39817 6.50881 6.69350 6.84928 6.86650 7.34361 8.86645 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038669 B = 0.003210 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.925376 B = 8721.934080 C = 9274.394603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.689 5.689 11 C 0.061 3.939 12 C -0.106 4.106 13 C 0.158 3.842 14 H 0.060 0.940 15 C -0.126 4.126 16 C -0.069 4.069 17 C -0.173 4.173 18 C -0.083 4.083 19 C -0.185 4.185 20 C -0.088 4.088 21 C -0.213 4.213 22 C 0.201 3.799 23 N -0.750 5.750 24 H 0.265 0.735 25 H -0.003 1.003 26 H -0.041 1.041 27 H 0.337 0.663 28 H 0.052 0.948 29 H 0.014 0.986 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -23.186 -0.946 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.079 3.921 10 N -0.319 5.319 11 C -0.068 4.068 12 C -0.144 4.144 13 C 0.053 3.947 14 H 0.078 0.922 15 C -0.164 4.164 16 C -0.106 4.106 17 C -0.177 4.177 18 C -0.101 4.101 19 C -0.205 4.205 20 C -0.106 4.106 21 C -0.236 4.236 22 C 0.098 3.902 23 N -0.382 5.382 24 H 0.074 0.926 25 H 0.015 0.985 26 H -0.023 1.023 27 H 0.154 0.846 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.428 -23.049 -1.448 23.348 hybrid contribution -0.695 1.466 0.475 1.690 sum 2.734 -21.583 -0.974 21.777 Atomic orbital electron populations 1.70100 1.07905 1.28025 1.51531 1.26004 0.95813 1.03580 0.94511 0.85242 0.78964 0.78056 0.77767 1.18468 1.20410 1.20229 1.21586 0.93890 0.91351 1.50598 0.91543 1.19206 0.90684 0.89158 0.93032 1.60555 1.20510 1.01562 1.49300 1.21918 0.96141 0.89763 0.99010 1.21691 0.97487 0.91147 1.04068 1.21109 0.92766 0.94698 0.86169 0.92232 1.21889 0.97346 0.93693 1.03516 1.20330 0.96077 0.98163 0.96032 1.19646 1.03161 0.92087 1.02843 1.21161 0.96096 0.96470 0.96421 1.21144 1.01086 0.99055 0.99206 1.21134 0.98649 0.91814 0.99010 1.20912 1.01625 0.98935 1.02097 1.17904 0.92427 0.85796 0.94099 1.45091 1.61607 1.06517 1.24942 0.92578 0.98469 1.02320 0.84563 0.92966 0.96821 0.89046 0.90860 0.91750 0.88535 0.90678 0.89164 0.84248 0.84522 0.84680 0.86483 0.76561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 13.29 21.45 0.28 -56.85 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.98 44.39 29.54 68.60 2.03 46.42 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -30.87 9.32 25.60 0.24 -30.63 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.29 5.44 85.56 0.47 11.75 16 10 N -0.69 -29.49 6.49 -517.94 -3.36 -32.86 16 11 C 0.06 2.12 5.56 86.31 0.48 2.60 16 12 C -0.11 -2.67 5.10 30.60 0.16 -2.52 16 13 C 0.16 3.60 2.92 45.05 0.13 3.73 16 14 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 15 C -0.13 -2.29 5.42 30.69 0.17 -2.13 16 16 C -0.07 -1.20 5.78 29.77 0.17 -1.03 16 17 C -0.17 -3.80 5.76 -19.75 -0.11 -3.92 16 18 C -0.08 -1.58 9.66 22.31 0.22 -1.37 16 19 C -0.19 -3.48 10.04 22.26 0.22 -3.25 16 20 C -0.09 -1.81 10.05 22.24 0.22 -1.59 16 21 C -0.21 -5.18 9.88 22.42 0.22 -4.95 16 22 C 0.20 5.06 6.48 38.14 0.25 5.31 16 23 N -0.75 -18.93 5.47 -317.33 -1.74 -20.67 16 24 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H -0.04 -2.40 8.14 -2.39 -0.02 -2.42 16 27 H 0.34 13.43 8.72 -89.69 -0.78 12.64 16 28 H 0.05 1.89 6.92 -2.39 -0.02 1.87 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.09 1.24 8.12 -2.39 -0.02 1.23 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.40 10.51 7.39 -92.71 -0.68 9.82 16 Total: -1.00 -66.14 325.74 0.06 -66.08 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.44 Total: 25.45 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 3.29 Total: -27.58 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -4.81 Total: -110.37 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.14 0.06 -66.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568382720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.780 kcal (2) G-P(sol) polarization free energy of solvation -66.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds