Wall clock time and date at job start Mon Mar 30 2020 07:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38232 * 120.42147 * 2 1 4 4 N 1.31846 * 120.76711 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72484 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.61752 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46846 * 269.97927 * 6 5 4 8 8 N 1.46504 * 109.47064 * 180.02562 * 7 6 5 9 9 C 1.36936 * 119.99725 * 270.00237 * 8 7 6 10 10 H 1.08001 * 119.99906 * 144.92665 * 9 8 7 11 11 C 1.38811 * 119.99787 * 324.91854 * 9 8 7 12 12 N 1.31613 * 120.00429 * 337.94416 * 11 9 8 13 13 Si 1.86801 * 119.99463 * 157.94108 * 11 9 8 14 14 H 1.48494 * 109.47519 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47131 * 120.00370 * 13 11 9 16 16 H 1.48509 * 109.47149 * 240.00048 * 13 11 9 17 17 C 1.46498 * 119.99931 * 89.99747 * 8 7 6 18 18 C 1.53003 * 117.49669 * 183.23764 * 17 8 7 19 19 C 1.52999 * 117.50058 * 114.57835 * 17 8 7 20 20 C 1.38183 * 120.76856 * 359.97438 * 5 4 3 21 21 C 1.50695 * 120.42137 * 179.97438 * 20 5 4 22 22 C 1.38635 * 120.42310 * 180.24977 * 2 1 3 23 23 H 1.08998 * 109.47463 * 90.00210 * 1 2 3 24 24 H 1.09006 * 109.47040 * 210.00568 * 1 2 3 25 25 H 1.09000 * 109.47197 * 330.00086 * 1 2 3 26 26 H 1.07995 * 119.61449 * 0.03639 * 3 2 1 27 27 H 1.09001 * 109.46835 * 29.97382 * 6 5 4 28 28 H 1.08997 * 109.47105 * 149.97821 * 6 5 4 29 29 H 1.09001 * 109.47339 * 299.99764 * 7 6 5 30 30 H 1.08997 * 109.47355 * 60.00048 * 7 6 5 31 31 H 0.97002 * 120.00514 * 175.91004 * 12 11 9 32 32 H 1.09003 * 115.55061 * 328.90716 * 17 8 7 33 33 H 1.08993 * 117.49833 * 0.02562 * 18 17 8 34 34 H 1.08999 * 117.49393 * 145.01818 * 18 17 8 35 35 H 1.08996 * 117.50001 * 214.98065 * 19 17 8 36 36 H 1.09007 * 117.49589 * 359.97438 * 19 17 8 37 37 H 1.08993 * 109.47178 * 89.99975 * 21 20 5 38 38 H 1.09007 * 109.47165 * 330.00078 * 21 20 5 39 39 H 1.08997 * 109.47147 * 210.00377 * 21 20 5 40 40 H 1.07995 * 120.78287 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2256 0.0823 -0.0005 6 6 5.7313 0.1468 -0.0005 7 6 6.2408 0.1682 -1.4431 8 7 7.7045 0.2303 -1.4431 9 6 8.3382 1.4441 -1.4433 10 1 9.2667 1.5686 -0.9059 11 6 7.7873 2.5145 -2.1344 12 7 6.9376 2.2972 -3.1157 13 14 8.2520 4.2636 -1.6715 14 1 9.2181 4.2373 -0.5441 15 1 8.8739 4.9364 -2.8401 16 1 7.0336 5.0077 -1.2625 17 6 8.4901 -1.0063 -1.4429 18 6 10.0126 -0.8759 -1.3663 19 6 9.3453 -1.3002 -2.6770 20 6 3.5948 -1.1471 0.0005 21 6 4.4026 -2.4192 -0.0001 22 6 2.2089 -1.1955 -0.0052 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6675 2.1276 0.0006 27 1 6.0561 1.0518 0.5129 28 1 6.1324 -0.7266 0.5136 29 1 5.9159 -0.7367 -1.9566 30 1 5.8397 1.0416 -1.9572 31 1 6.5074 3.0448 -3.5594 32 1 8.0314 -1.8546 -0.9348 33 1 10.4297 0.1298 -1.3157 34 1 10.5555 -1.6386 -0.8081 35 1 9.4496 -2.3418 -2.9806 36 1 9.3231 -0.5737 -3.4893 37 1 4.5986 -2.7257 1.0273 38 1 5.3482 -2.2489 -0.5151 39 1 3.8456 -3.2031 -0.5131 40 1 1.6888 -2.1419 -0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568505237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:51 Heat of formation + Delta-G solvation = 67.314401 kcal Electronic energy + Delta-G solvation = -19511.043651 eV Core-core repulsion = 16712.745135 eV Total energy + Delta-G solvation = -2798.298516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10618 -37.04471 -34.62841 -33.27963 -33.20612 -31.09676 -29.06415 -27.21809 -26.12200 -24.32974 -22.77549 -21.64444 -21.26598 -20.25959 -19.61034 -16.60474 -16.28666 -15.79443 -15.32936 -14.54465 -14.27707 -14.20283 -13.84716 -13.20622 -13.00247 -12.90599 -12.63410 -12.52670 -12.25922 -12.19831 -12.06991 -11.78716 -11.30674 -11.05811 -10.80558 -10.69049 -10.63357 -10.12148 -10.02811 -9.62974 -9.52698 -9.29336 -9.22234 -8.92327 -8.40739 -8.23694 -6.53118 -5.73134 -3.34032 1.42987 1.60744 3.40908 3.49725 3.51218 4.09187 4.50047 4.72314 4.91186 4.95979 4.99130 5.15827 5.20770 5.36028 5.39811 5.46717 5.55602 5.60957 5.78771 5.82263 5.87921 5.94216 6.11870 6.15839 6.18184 6.27567 6.31931 6.47552 6.51838 6.56163 6.57963 6.66140 6.71988 7.03892 7.10109 7.24203 7.26282 7.77559 7.86181 8.48697 8.52712 9.19303 9.83058 10.37463 11.22201 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.006529 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.949228 B = 4287.397897 C = 5463.614117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.159 4.159 3 C 0.095 3.905 4 N -0.472 5.472 5 C 0.150 3.850 6 C -0.092 4.092 7 C 0.157 3.843 8 N -0.550 5.550 9 C -0.261 4.261 10 H 0.067 0.933 11 C 0.015 3.985 12 N -0.880 5.880 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.120 3.880 18 C -0.196 4.196 19 C -0.222 4.222 20 C -0.138 4.138 21 C -0.111 4.111 22 C -0.080 4.080 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.147 0.853 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.106 0.894 31 H 0.254 0.746 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.294 -8.119 5.999 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.161 4.161 3 C -0.063 4.063 4 N -0.179 5.179 5 C 0.012 3.988 6 C -0.133 4.133 7 C 0.030 3.970 8 N -0.266 5.266 9 C -0.390 4.390 10 H 0.084 0.916 11 C -0.186 4.186 12 N -0.522 5.522 13 Si 0.724 3.276 14 H -0.200 1.200 15 H -0.218 1.218 16 H -0.212 1.212 17 C 0.011 3.989 18 C -0.234 4.234 19 C -0.263 4.263 20 C -0.140 4.140 21 C -0.168 4.168 22 C -0.106 4.106 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.165 0.835 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.899 -7.168 5.853 12.838 hybrid contribution -0.346 0.150 0.100 0.390 sum -9.245 -7.018 5.952 13.044 Atomic orbital electron populations 1.20631 0.90817 1.02453 1.02132 1.20793 0.97038 0.94372 1.03945 1.22610 0.90145 0.97058 0.96483 1.67616 1.07643 1.31246 1.11397 1.21492 0.97497 0.87233 0.92591 1.21350 0.86244 1.02514 1.03177 1.20907 0.83277 1.02085 0.90752 1.43430 1.00309 0.99976 1.82841 1.19079 1.08307 0.86595 1.25009 0.91573 1.25108 0.99979 0.98986 0.94552 1.70030 1.31311 1.30493 1.20329 0.86368 0.78073 0.85223 0.77979 1.20046 1.21765 1.21198 1.21221 0.88725 0.90931 0.98037 1.23028 0.97075 1.02002 1.01316 1.23363 1.09769 0.99544 0.93652 1.20734 0.94208 0.96749 1.02298 1.20772 1.00305 0.93545 1.02147 1.21252 0.93377 0.97729 0.98230 0.91369 0.91884 0.91581 0.83545 0.90233 0.91872 0.95738 0.87666 0.93596 0.89663 0.88471 0.90830 0.91306 0.89056 0.91383 0.90228 0.91907 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.04 36.00 0.36 -0.63 16 2 C -0.16 -2.18 5.90 -104.48 -0.62 -2.79 16 3 C 0.09 1.53 10.86 -17.55 -0.19 1.33 16 4 N -0.47 -9.35 10.27 -9.47 -0.10 -9.44 16 5 C 0.15 2.86 6.03 -82.58 -0.50 2.36 16 6 C -0.09 -1.89 5.14 -27.88 -0.14 -2.04 16 7 C 0.16 3.69 5.18 -4.04 -0.02 3.67 16 8 N -0.55 -13.54 2.78 -165.66 -0.46 -14.00 16 9 C -0.26 -7.04 8.63 -15.06 -0.13 -7.17 16 10 H 0.07 1.79 6.55 -52.49 -0.34 1.45 16 11 C 0.01 0.40 4.96 -17.43 -0.09 0.32 16 12 N -0.88 -25.57 11.33 55.49 0.63 -24.94 16 13 Si 0.89 21.97 29.61 -169.99 -5.03 16.94 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.12 2.55 6.56 -67.93 -0.45 2.10 16 18 C -0.20 -3.87 9.80 -26.69 -0.26 -4.13 16 19 C -0.22 -4.55 10.36 -26.69 -0.28 -4.83 16 20 C -0.14 -2.18 5.90 -104.48 -0.62 -2.80 16 21 C -0.11 -1.45 9.21 36.00 0.33 -1.12 16 22 C -0.08 -1.11 9.55 -39.27 -0.37 -1.48 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 25 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 28 H 0.06 1.16 6.69 -51.93 -0.35 0.81 16 29 H 0.02 0.55 7.33 -51.93 -0.38 0.17 16 30 H 0.11 2.90 5.36 -51.93 -0.28 2.62 16 31 H 0.25 7.17 8.32 -40.82 -0.34 6.83 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.10 2.10 6.37 -51.93 -0.33 1.77 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 2.15 8.14 -51.92 -0.42 1.72 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.15 5.87 -51.92 -0.30 0.84 16 39 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -30.28 327.31 -9.18 -39.47 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.19 Total: 4.26 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.97 Total: -17.21 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.07 Total: -48.39 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.28 -9.18 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568505237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.782 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds