Wall clock time and date at job start Mon Mar 30 2020 07:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38232 * 120.42147 * 2 1 4 4 N 1.31846 * 120.76711 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72484 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.61752 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46846 * 269.97927 * 6 5 4 8 8 N 1.46504 * 109.47064 * 180.02562 * 7 6 5 9 9 C 1.36936 * 119.99725 * 270.00237 * 8 7 6 10 10 H 1.08001 * 119.99906 * 144.92665 * 9 8 7 11 11 C 1.38811 * 119.99787 * 324.91854 * 9 8 7 12 12 N 1.31613 * 120.00429 * 337.94416 * 11 9 8 13 13 Si 1.86801 * 119.99463 * 157.94108 * 11 9 8 14 14 H 1.48494 * 109.47519 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47131 * 120.00370 * 13 11 9 16 16 H 1.48509 * 109.47149 * 240.00048 * 13 11 9 17 17 C 1.46498 * 119.99931 * 89.99747 * 8 7 6 18 18 C 1.53003 * 117.49669 * 183.23764 * 17 8 7 19 19 C 1.52999 * 117.50058 * 114.57835 * 17 8 7 20 20 C 1.38183 * 120.76856 * 359.97438 * 5 4 3 21 21 C 1.50695 * 120.42137 * 179.97438 * 20 5 4 22 22 C 1.38635 * 120.42310 * 180.24977 * 2 1 3 23 23 H 1.08998 * 109.47463 * 90.00210 * 1 2 3 24 24 H 1.09006 * 109.47040 * 210.00568 * 1 2 3 25 25 H 1.09000 * 109.47197 * 330.00086 * 1 2 3 26 26 H 1.07995 * 119.61449 * 0.03639 * 3 2 1 27 27 H 1.09001 * 109.46835 * 29.97382 * 6 5 4 28 28 H 1.08997 * 109.47105 * 149.97821 * 6 5 4 29 29 H 1.09001 * 109.47339 * 299.99764 * 7 6 5 30 30 H 1.08997 * 109.47355 * 60.00048 * 7 6 5 31 31 H 0.97002 * 120.00514 * 175.91004 * 12 11 9 32 32 H 1.09003 * 115.55061 * 328.90716 * 17 8 7 33 33 H 1.08993 * 117.49833 * 0.02562 * 18 17 8 34 34 H 1.08999 * 117.49393 * 145.01818 * 18 17 8 35 35 H 1.08996 * 117.50001 * 214.98065 * 19 17 8 36 36 H 1.09007 * 117.49589 * 359.97438 * 19 17 8 37 37 H 1.08993 * 109.47178 * 89.99975 * 21 20 5 38 38 H 1.09007 * 109.47165 * 330.00078 * 21 20 5 39 39 H 1.08997 * 109.47147 * 210.00377 * 21 20 5 40 40 H 1.07995 * 120.78287 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2256 0.0823 -0.0005 6 6 5.7313 0.1468 -0.0005 7 6 6.2408 0.1682 -1.4431 8 7 7.7045 0.2303 -1.4431 9 6 8.3382 1.4441 -1.4433 10 1 9.2667 1.5686 -0.9059 11 6 7.7873 2.5145 -2.1344 12 7 6.9376 2.2972 -3.1157 13 14 8.2520 4.2636 -1.6715 14 1 9.2181 4.2373 -0.5441 15 1 8.8739 4.9364 -2.8401 16 1 7.0336 5.0077 -1.2625 17 6 8.4901 -1.0063 -1.4429 18 6 10.0126 -0.8759 -1.3663 19 6 9.3453 -1.3002 -2.6770 20 6 3.5948 -1.1471 0.0005 21 6 4.4026 -2.4192 -0.0001 22 6 2.2089 -1.1955 -0.0052 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6675 2.1276 0.0006 27 1 6.0561 1.0518 0.5129 28 1 6.1324 -0.7266 0.5136 29 1 5.9159 -0.7367 -1.9566 30 1 5.8397 1.0416 -1.9572 31 1 6.5074 3.0448 -3.5594 32 1 8.0314 -1.8546 -0.9348 33 1 10.4297 0.1298 -1.3157 34 1 10.5555 -1.6386 -0.8081 35 1 9.4496 -2.3418 -2.9806 36 1 9.3231 -0.5737 -3.4893 37 1 4.5986 -2.7257 1.0273 38 1 5.3482 -2.2489 -0.5151 39 1 3.8456 -3.2031 -0.5131 40 1 1.6888 -2.1419 -0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568505237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:51 Heat of formation + Delta-G solvation = 50.897205 kcal Electronic energy + Delta-G solvation = -19511.755554 eV Core-core repulsion = 16712.745135 eV Total energy + Delta-G solvation = -2799.010419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33986 -38.80341 -36.07538 -34.87128 -34.45784 -32.87282 -30.65632 -28.24974 -27.58757 -26.08192 -24.21133 -23.13904 -22.81487 -21.61586 -21.35408 -18.26337 -17.86084 -17.26199 -17.02590 -16.31682 -15.74474 -15.47287 -15.26509 -14.56432 -14.34717 -14.12340 -13.95223 -13.85520 -13.78148 -13.28796 -13.21627 -13.15580 -12.88762 -12.86163 -12.61828 -12.45987 -12.10431 -11.99230 -11.80057 -11.47775 -11.32331 -10.89382 -10.46895 -10.41260 -10.20226 -9.46886 -8.53963 -7.79400 -5.44827 0.21809 0.44404 1.40443 1.44833 1.53131 2.47800 2.84700 3.15896 3.38962 3.44999 3.64988 3.90247 3.96820 4.07095 4.14059 4.32294 4.40642 4.49537 4.49583 4.59026 4.65712 4.78875 4.81846 4.84724 4.86358 4.90219 4.96249 5.03823 5.08322 5.20508 5.23171 5.35552 5.39410 5.40235 5.52144 5.56687 5.68480 5.84275 5.95848 6.44614 7.14357 7.23025 7.86221 8.34173 9.10189 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.006529 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.949228 B = 4287.397897 C = 5463.614117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.144 4.144 3 C 0.070 3.930 4 N -0.519 5.519 5 C 0.111 3.889 6 C -0.071 4.071 7 C 0.166 3.834 8 N -0.568 5.568 9 C -0.257 4.257 10 H 0.063 0.937 11 C -0.037 4.037 12 N -0.912 5.912 13 Si 0.948 3.052 14 H -0.265 1.265 15 H -0.290 1.290 16 H -0.294 1.294 17 C 0.100 3.900 18 C -0.181 4.181 19 C -0.218 4.218 20 C -0.137 4.137 21 C -0.108 4.108 22 C -0.082 4.082 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.162 0.838 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.247 0.753 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -10.671 7.199 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.146 4.146 3 C -0.088 4.088 4 N -0.227 5.227 5 C -0.027 4.027 6 C -0.111 4.111 7 C 0.039 3.961 8 N -0.285 5.285 9 C -0.387 4.387 10 H 0.081 0.919 11 C -0.235 4.235 12 N -0.556 5.556 13 Si 0.777 3.223 14 H -0.189 1.189 15 H -0.217 1.217 16 H -0.221 1.221 17 C -0.008 4.008 18 C -0.219 4.219 19 C -0.259 4.259 20 C -0.139 4.139 21 C -0.165 4.165 22 C -0.107 4.107 23 H 0.098 0.902 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.179 0.821 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.117 -9.737 7.068 15.720 hybrid contribution -0.043 0.866 -0.258 0.905 sum -10.161 -8.871 6.810 15.110 Atomic orbital electron populations 1.20729 0.87501 1.04220 1.03314 1.21260 0.99300 0.93375 1.00710 1.23003 0.89237 0.99115 0.97406 1.67451 1.09791 1.32650 1.12815 1.21311 0.96536 0.88697 0.96112 1.20959 0.88192 1.01450 1.00529 1.20647 0.82900 1.00124 0.92423 1.43619 1.00944 1.00570 1.83320 1.19256 1.07871 0.87969 1.23644 0.91947 1.25747 1.00716 1.02025 0.94974 1.70164 1.32939 1.30732 1.21747 0.85510 0.77458 0.81537 0.77827 1.18909 1.21719 1.22120 1.21577 0.89513 0.90559 0.99148 1.23040 0.96063 1.01891 1.00883 1.23272 1.09698 1.00436 0.92520 1.21017 0.95596 0.96359 1.00905 1.20820 0.99436 0.92852 1.03426 1.21728 0.92608 0.99423 0.96953 0.90249 0.89621 0.90414 0.82063 0.93883 0.89886 0.95353 0.91923 0.94345 0.86510 0.90932 0.86816 0.87788 0.93049 0.89554 0.91897 0.89298 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 10.04 71.23 0.71 -0.85 16 2 C -0.14 -3.61 5.90 -19.77 -0.12 -3.72 16 3 C 0.07 2.23 10.86 84.69 0.92 3.15 16 4 N -0.52 -21.31 10.27 -183.88 -1.89 -23.20 16 5 C 0.11 4.30 6.03 42.54 0.26 4.56 16 6 C -0.07 -3.01 5.14 29.85 0.15 -2.86 16 7 C 0.17 8.10 5.18 86.38 0.45 8.54 16 8 N -0.57 -28.60 2.78 -678.02 -1.88 -30.48 16 9 C -0.26 -14.35 8.63 84.03 0.73 -13.62 16 10 H 0.06 3.47 6.55 -2.91 -0.02 3.45 16 11 C -0.04 -2.15 4.96 84.86 0.42 -1.73 16 12 N -0.91 -55.72 11.33 21.65 0.25 -55.47 16 13 Si 0.95 47.00 29.61 68.60 2.03 49.03 16 14 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 16 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 17 C 0.10 4.14 6.56 44.99 0.30 4.44 16 18 C -0.18 -6.83 9.80 30.62 0.30 -6.53 16 19 C -0.22 -8.71 10.36 30.62 0.32 -8.39 16 20 C -0.14 -4.11 5.90 -19.78 -0.12 -4.22 16 21 C -0.11 -2.54 9.21 71.23 0.66 -1.88 16 22 C -0.08 -2.00 9.55 22.47 0.21 -1.79 16 23 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.08 0.99 8.10 -2.38 -0.02 0.97 16 25 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 26 H 0.16 4.36 8.06 -2.91 -0.02 4.33 16 27 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 3.06 6.69 -2.39 -0.02 3.04 16 29 H 0.03 1.31 7.33 -2.39 -0.02 1.30 16 30 H 0.06 3.67 5.36 -2.39 -0.01 3.66 16 31 H 0.25 14.76 8.32 -92.71 -0.77 13.99 16 32 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 33 H 0.07 3.11 6.37 -2.39 -0.02 3.10 16 34 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.05 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.69 5.87 -2.38 -0.01 1.68 16 39 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 40 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -70.25 327.31 4.71 -65.55 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.01 Total: 19.48 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 5.19 Total: -24.90 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -3.53 Total: -109.16 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -70.25 4.71 -65.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568505237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.444 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds