Wall clock time and date at job start Mon Mar 30 2020 07:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38672 * 120.78664 * 2 1 4 4 C 1.38188 * 119.15960 * 179.97438 * 3 2 1 5 5 N 1.31883 * 120.76734 * 359.74433 * 4 3 2 6 6 C 1.31859 * 121.72061 * 0.52313 * 5 4 3 7 7 C 1.50706 * 119.61331 * 179.75574 * 6 5 4 8 8 H 1.08995 * 110.76538 * 19.80910 * 7 6 5 9 9 C 1.55141 * 110.70386 * 256.61162 * 7 6 5 10 10 C 1.54909 * 101.65228 * 205.96302 * 9 7 6 11 11 N 1.47850 * 104.79552 * 37.07331 * 10 9 7 12 12 C 1.46899 * 110.99640 * 213.63694 * 11 10 9 13 13 C 1.52998 * 109.46875 * 290.83891 * 12 11 10 14 14 C 1.50704 * 109.46681 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00632 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99523 * 180.27426 * 14 13 12 17 17 N 1.31510 * 120.00285 * 359.72326 * 16 14 13 18 18 Si 1.86806 * 119.99699 * 179.72271 * 16 14 13 19 19 H 1.48497 * 109.47100 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46894 * 120.00317 * 18 16 14 21 21 H 1.48500 * 109.46978 * 239.99944 * 18 16 14 22 22 C 1.47447 * 108.56366 * 335.90017 * 11 10 9 23 23 C 1.38220 * 120.76917 * 359.47866 * 6 5 4 24 24 H 1.09003 * 109.46815 * 270.02025 * 1 2 3 25 25 H 1.08997 * 109.47510 * 30.01879 * 1 2 3 26 26 H 1.09001 * 109.46942 * 150.02880 * 1 2 3 27 27 H 1.07992 * 120.42072 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.61347 * 179.97438 * 4 3 2 29 29 H 1.08999 * 110.99353 * 324.05691 * 9 7 6 30 30 H 1.09005 * 110.98950 * 87.83527 * 9 7 6 31 31 H 1.08994 * 110.37518 * 278.23875 * 10 9 7 32 32 H 1.09002 * 110.36933 * 155.89878 * 10 9 7 33 33 H 1.09007 * 109.46765 * 170.83936 * 12 11 10 34 34 H 1.08992 * 109.47296 * 50.84174 * 12 11 10 35 35 H 1.08993 * 109.47267 * 60.00548 * 13 12 11 36 36 H 1.09000 * 109.47229 * 299.99926 * 13 12 11 37 37 H 0.97005 * 120.00269 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.88708 * 120.39982 * 22 11 10 39 39 H 1.09004 * 109.88781 * 241.58660 * 22 11 10 40 40 H 1.07998 * 120.42510 * 180.23596 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0002 0.0061 6 6 3.5983 -1.1515 0.0011 7 6 4.3801 -2.4400 0.0023 8 1 5.3987 -2.2736 0.3525 9 6 4.3837 -3.0806 -1.4107 10 6 4.5866 -4.5790 -1.0743 11 7 3.8101 -4.7963 0.1650 12 6 4.4587 -5.7958 1.0241 13 6 4.3601 -7.1740 0.3671 14 6 5.0250 -8.1995 1.2489 15 1 5.4734 -7.8984 2.1840 16 6 5.0662 -9.5213 0.8587 17 7 4.5205 -9.8881 -0.2803 18 14 5.8972 -10.7912 1.9479 19 1 6.4280 -10.1275 3.1656 20 1 4.9098 -11.8285 2.3407 21 1 7.0137 -11.4272 1.2036 22 6 3.6735 -3.5061 0.8656 23 6 2.2167 -1.1909 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8903 -0.5134 27 1 1.6967 2.1377 0.0004 28 1 4.1583 2.0755 0.0001 29 1 3.4310 -2.9192 -1.9151 30 1 5.2102 -2.6990 -2.0103 31 1 5.6421 -4.7899 -0.9027 32 1 4.1998 -5.2043 -1.8790 33 1 3.9613 -5.8191 1.9938 34 1 5.5076 -5.5323 1.1601 35 1 4.8575 -7.1508 -0.6024 36 1 3.3112 -7.4375 0.2312 37 1 4.5498 -10.8179 -0.5550 38 1 2.6188 -3.2542 0.9764 39 1 4.1480 -3.5641 1.8452 40 1 1.6965 -2.1374 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572012230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:29 Heat of formation + Delta-G solvation = 24.187511 kcal Electronic energy + Delta-G solvation = -18829.733000 eV Core-core repulsion = 16029.564362 eV Total energy + Delta-G solvation = -2800.168638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61669 -38.46391 -34.35394 -33.77498 -32.49299 -30.69488 -28.84129 -28.16310 -27.65292 -24.62148 -23.53109 -22.04173 -21.48360 -20.08543 -19.77971 -16.79680 -16.63379 -16.32102 -15.50282 -15.09108 -14.69483 -14.43870 -14.36884 -13.86318 -13.53877 -13.12334 -12.90848 -12.75373 -12.67281 -12.32633 -12.02054 -11.92405 -11.46691 -11.27796 -11.01270 -10.97656 -10.79151 -10.59564 -10.48917 -9.83373 -9.60705 -9.52789 -9.36043 -9.08797 -8.96973 -8.32215 -7.71348 -5.97459 -3.99737 1.00005 1.13511 3.32568 3.39923 3.44039 3.63140 4.10552 4.39482 4.46964 4.53336 4.63799 4.90030 4.90501 5.00512 5.02942 5.21677 5.26964 5.29006 5.38568 5.46180 5.58498 5.66014 5.69759 5.76487 5.83040 5.99301 6.03787 6.15790 6.19548 6.21175 6.41735 6.44301 6.50272 6.62507 6.99704 7.50249 7.53367 7.79667 7.92179 7.93055 8.10917 8.46134 9.07967 9.63882 11.13935 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042722 B = 0.003433 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.237732 B = 8154.197561 C = 8318.912146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.042 4.042 3 C -0.186 4.186 4 C 0.102 3.898 5 N -0.490 5.490 6 C 0.154 3.846 7 C -0.064 4.064 8 H 0.092 0.908 9 C -0.115 4.115 10 C 0.048 3.952 11 N -0.528 5.528 12 C 0.057 3.943 13 C 0.029 3.971 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.046 3.954 23 C -0.168 4.168 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.153 0.847 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.022 0.978 35 H 0.016 0.984 36 H 0.024 0.976 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 21.766 -0.942 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.049 4.049 3 C -0.206 4.206 4 C -0.055 4.055 5 N -0.199 5.199 6 C 0.016 3.984 7 C -0.084 4.084 8 H 0.111 0.889 9 C -0.154 4.154 10 C -0.079 4.079 11 N -0.252 5.252 12 C -0.070 4.070 13 C -0.009 4.009 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.083 4.083 23 C -0.188 4.188 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.149 0.851 28 H 0.170 0.830 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.376 21.408 -1.150 22.103 hybrid contribution 0.374 -0.375 0.800 0.959 sum -5.003 21.034 -0.350 21.623 Atomic orbital electron populations 1.20838 0.90265 1.03351 1.02927 1.20356 0.96784 0.92951 0.94857 1.21985 0.95683 0.98529 1.04419 1.22697 0.91753 0.95999 0.95083 1.67504 1.41404 0.98080 1.12933 1.21073 0.90955 0.93111 0.93224 1.21365 0.99392 0.89961 0.97718 0.88943 1.22783 1.02308 0.95450 0.94849 1.23014 0.96872 0.94291 0.93754 1.63718 1.49519 1.06364 1.05575 1.22567 0.94794 0.93917 0.95712 1.19057 0.97807 0.88296 0.95708 1.21245 1.36390 0.92719 1.05667 0.92779 1.24995 0.95624 0.98557 0.95166 1.69983 1.44901 1.17029 1.21312 0.86552 0.79254 0.81585 0.80697 1.19783 1.21000 1.21049 1.23039 1.00396 0.88481 0.96348 1.21992 0.95006 0.99107 1.02692 0.90494 0.91166 0.90772 0.85135 0.82978 0.90830 0.90853 0.93283 0.89889 0.92173 0.95983 0.96539 0.95746 0.93082 0.90525 0.92724 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.06 36.01 0.36 -0.47 16 2 C -0.04 -0.41 5.92 -104.32 -0.62 -1.03 16 3 C -0.19 -1.72 9.82 -39.44 -0.39 -2.11 16 4 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 5 N -0.49 -6.55 10.27 -9.47 -0.10 -6.65 16 6 C 0.15 2.04 5.86 -82.58 -0.48 1.55 16 7 C -0.06 -0.89 3.31 -89.95 -0.30 -1.19 16 8 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 9 C -0.12 -1.58 6.50 -24.59 -0.16 -1.74 16 10 C 0.05 0.81 5.78 -2.29 -0.01 0.80 16 11 N -0.53 -9.68 5.16 -231.24 -1.19 -10.87 16 12 C 0.06 1.22 4.50 -3.83 -0.02 1.21 16 13 C 0.03 0.76 5.02 -27.88 -0.14 0.62 16 14 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.05 0.70 6.32 -2.83 -0.02 0.68 16 23 C -0.17 -1.98 8.55 -39.44 -0.34 -2.31 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 26 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 29 H 0.07 0.98 7.95 -51.93 -0.41 0.56 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.86 7.62 -51.93 -0.40 0.46 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 1.27 8.03 -51.93 -0.42 0.86 16 34 H 0.02 0.47 7.85 -51.93 -0.41 0.06 16 35 H 0.02 0.45 7.49 -51.93 -0.39 0.06 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 1.08 5.56 -51.93 -0.29 0.79 16 39 H 0.05 0.83 7.55 -51.93 -0.39 0.44 16 40 H 0.14 1.61 6.42 -52.49 -0.34 1.27 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -31.59 324.53 -9.78 -41.37 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.38 Total: -2.42 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.72 Total: -16.78 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.55 Total: -43.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.59 -9.78 -41.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572012230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.559 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds