Wall clock time and date at job start Mon Mar 30 2020 07:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38672 * 120.78664 * 2 1 4 4 C 1.38188 * 119.15960 * 179.97438 * 3 2 1 5 5 N 1.31883 * 120.76734 * 359.74433 * 4 3 2 6 6 C 1.31859 * 121.72061 * 0.52313 * 5 4 3 7 7 C 1.50706 * 119.61331 * 179.75574 * 6 5 4 8 8 H 1.08995 * 110.76538 * 19.80910 * 7 6 5 9 9 C 1.55141 * 110.70386 * 256.61162 * 7 6 5 10 10 C 1.54909 * 101.65228 * 205.96302 * 9 7 6 11 11 N 1.47850 * 104.79552 * 37.07331 * 10 9 7 12 12 C 1.46899 * 110.99640 * 213.63694 * 11 10 9 13 13 C 1.52998 * 109.46875 * 290.83891 * 12 11 10 14 14 C 1.50704 * 109.46681 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00632 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99523 * 180.27426 * 14 13 12 17 17 N 1.31510 * 120.00285 * 359.72326 * 16 14 13 18 18 Si 1.86806 * 119.99699 * 179.72271 * 16 14 13 19 19 H 1.48497 * 109.47100 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46894 * 120.00317 * 18 16 14 21 21 H 1.48500 * 109.46978 * 239.99944 * 18 16 14 22 22 C 1.47447 * 108.56366 * 335.90017 * 11 10 9 23 23 C 1.38220 * 120.76917 * 359.47866 * 6 5 4 24 24 H 1.09003 * 109.46815 * 270.02025 * 1 2 3 25 25 H 1.08997 * 109.47510 * 30.01879 * 1 2 3 26 26 H 1.09001 * 109.46942 * 150.02880 * 1 2 3 27 27 H 1.07992 * 120.42072 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.61347 * 179.97438 * 4 3 2 29 29 H 1.08999 * 110.99353 * 324.05691 * 9 7 6 30 30 H 1.09005 * 110.98950 * 87.83527 * 9 7 6 31 31 H 1.08994 * 110.37518 * 278.23875 * 10 9 7 32 32 H 1.09002 * 110.36933 * 155.89878 * 10 9 7 33 33 H 1.09007 * 109.46765 * 170.83936 * 12 11 10 34 34 H 1.08992 * 109.47296 * 50.84174 * 12 11 10 35 35 H 1.08993 * 109.47267 * 60.00548 * 13 12 11 36 36 H 1.09000 * 109.47229 * 299.99926 * 13 12 11 37 37 H 0.97005 * 120.00269 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.88708 * 120.39982 * 22 11 10 39 39 H 1.09004 * 109.88781 * 241.58660 * 22 11 10 40 40 H 1.07998 * 120.42510 * 180.23596 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0002 0.0061 6 6 3.5983 -1.1515 0.0011 7 6 4.3801 -2.4400 0.0023 8 1 5.3987 -2.2736 0.3525 9 6 4.3837 -3.0806 -1.4107 10 6 4.5866 -4.5790 -1.0743 11 7 3.8101 -4.7963 0.1650 12 6 4.4587 -5.7958 1.0241 13 6 4.3601 -7.1740 0.3671 14 6 5.0250 -8.1995 1.2489 15 1 5.4734 -7.8984 2.1840 16 6 5.0662 -9.5213 0.8587 17 7 4.5205 -9.8881 -0.2803 18 14 5.8972 -10.7912 1.9479 19 1 6.4280 -10.1275 3.1656 20 1 4.9098 -11.8285 2.3407 21 1 7.0137 -11.4272 1.2036 22 6 3.6735 -3.5061 0.8656 23 6 2.2167 -1.1909 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8903 -0.5134 27 1 1.6967 2.1377 0.0004 28 1 4.1583 2.0755 0.0001 29 1 3.4310 -2.9192 -1.9151 30 1 5.2102 -2.6990 -2.0103 31 1 5.6421 -4.7899 -0.9027 32 1 4.1998 -5.2043 -1.8790 33 1 3.9613 -5.8191 1.9938 34 1 5.5076 -5.5323 1.1601 35 1 4.8575 -7.1508 -0.6024 36 1 3.3112 -7.4375 0.2312 37 1 4.5498 -10.8179 -0.5550 38 1 2.6188 -3.2542 0.9764 39 1 4.1480 -3.5641 1.8452 40 1 1.6965 -2.1374 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572012230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:28 Heat of formation + Delta-G solvation = 4.709195 kcal Electronic energy + Delta-G solvation = -18830.577643 eV Core-core repulsion = 16029.564362 eV Total energy + Delta-G solvation = -2801.013281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52350 -39.73986 -35.83629 -34.91051 -34.10376 -32.04830 -30.41498 -29.25905 -28.52735 -26.43020 -24.59825 -23.23925 -22.88165 -21.44594 -21.08614 -18.55676 -17.71115 -17.44680 -16.60003 -16.52980 -16.22858 -15.69988 -15.51539 -15.23147 -14.64959 -14.40180 -13.99665 -13.83257 -13.78567 -13.49251 -13.37519 -13.25768 -12.92239 -12.81723 -12.56560 -12.38193 -12.32984 -12.03872 -11.83047 -11.70306 -11.34814 -11.21927 -10.55814 -10.39511 -10.36395 -9.84494 -9.21315 -8.19856 -6.31275 0.17472 0.34369 1.40250 1.40632 1.54054 2.40409 2.78812 3.07060 3.13454 3.23958 3.60184 3.73810 3.86029 3.92334 4.08857 4.20228 4.30478 4.34028 4.44651 4.46908 4.57495 4.60422 4.70178 4.72409 4.80220 4.88855 4.90116 4.99204 5.02713 5.03368 5.11442 5.19125 5.32519 5.44282 5.46155 5.65136 5.78855 5.83735 6.06877 6.17455 6.32358 6.85973 7.08593 7.37808 8.92484 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042722 B = 0.003433 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.237732 B = 8154.197561 C = 8318.912146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 C -0.178 4.178 4 C 0.092 3.908 5 N -0.519 5.519 6 C 0.135 3.865 7 C -0.055 4.055 8 H 0.084 0.916 9 C -0.101 4.101 10 C 0.046 3.954 11 N -0.539 5.539 12 C 0.074 3.926 13 C 0.038 3.962 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.278 1.278 22 C 0.049 3.951 23 C -0.180 4.180 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.179 0.821 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.021 0.979 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.264 0.736 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 23.570 -0.144 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.197 4.197 4 C -0.065 4.065 5 N -0.229 5.229 6 C -0.002 4.002 7 C -0.075 4.075 8 H 0.103 0.897 9 C -0.140 4.140 10 C -0.082 4.082 11 N -0.263 5.263 12 C -0.054 4.054 13 C 0.000 4.000 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.079 4.079 23 C -0.200 4.200 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.182 0.818 28 H 0.196 0.804 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.011 0.989 36 H 0.012 0.988 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.830 23.230 -0.350 23.953 hybrid contribution 0.453 -0.842 0.515 1.086 sum -5.378 22.389 0.165 23.026 Atomic orbital electron populations 1.20901 0.88216 1.04310 1.03784 1.20733 0.98313 0.92535 0.93699 1.22362 0.95281 0.99674 1.02423 1.23220 0.92852 0.95997 0.94424 1.67445 1.42486 0.98859 1.14094 1.20880 0.91409 0.92718 0.95155 1.21178 0.98962 0.90355 0.96999 0.89744 1.22680 1.03171 0.92831 0.95282 1.22994 0.95870 0.96478 0.92817 1.63619 1.49287 1.07591 1.05846 1.22204 0.95109 0.92360 0.95697 1.18876 0.95188 0.91040 0.94852 1.21660 1.36759 0.93740 1.06183 0.92269 1.25967 0.96142 1.00951 0.96628 1.70116 1.46025 1.17803 1.23146 0.85377 0.78182 0.78470 0.78870 1.18624 1.20255 1.20325 1.23054 1.01447 0.87249 0.96183 1.22041 0.94566 0.99986 1.03403 0.89551 0.89257 0.90831 0.81816 0.80415 0.90144 0.89534 0.94365 0.91233 0.91896 0.96032 0.98883 0.98847 0.92740 0.89211 0.92824 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.06 71.24 0.72 -0.60 16 2 C -0.04 -0.78 5.92 -19.67 -0.12 -0.90 16 3 C -0.18 -2.72 9.82 22.36 0.22 -2.50 16 4 C 0.09 1.72 11.18 84.67 0.95 2.66 16 5 N -0.52 -13.24 10.27 -183.88 -1.89 -15.12 16 6 C 0.14 3.46 5.86 42.55 0.25 3.71 16 7 C -0.05 -1.51 3.31 -10.36 -0.03 -1.54 16 8 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 9 C -0.10 -2.76 6.50 31.98 0.21 -2.55 16 10 C 0.05 1.60 5.78 86.77 0.50 2.10 16 11 N -0.54 -20.24 5.16 -885.52 -4.57 -24.82 16 12 C 0.07 3.26 4.50 86.30 0.39 3.65 16 13 C 0.04 2.08 5.02 29.85 0.15 2.23 16 14 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 15 H 0.06 3.31 7.74 -2.92 -0.02 3.29 16 16 C 0.00 0.06 5.46 84.66 0.46 0.53 16 17 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 18 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C 0.05 1.47 6.32 86.64 0.55 2.02 16 23 C -0.18 -4.01 8.55 22.36 0.19 -3.82 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 0.69 8.10 -2.39 -0.02 0.67 16 26 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 27 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 29 H 0.08 2.09 7.95 -2.39 -0.02 2.07 16 30 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.04 1.39 7.62 -2.39 -0.02 1.38 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 2.70 8.03 -2.38 -0.02 2.68 16 34 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 35 H -0.01 -0.42 7.49 -2.39 -0.02 -0.44 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 38 H 0.09 2.49 5.56 -2.39 -0.01 2.48 16 39 H 0.05 1.63 7.55 -2.38 -0.02 1.61 16 40 H 0.14 3.06 6.42 -2.91 -0.02 3.04 16 Total: -1.00 -68.94 324.53 1.52 -67.43 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.00 Total: 9.46 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 4.66 Total: -26.56 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -6.18 Total: -97.25 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.94 1.52 -67.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572012230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.137 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds