Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00098 * 2 1 4 4 C 1.38733 * 120.05383 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94151 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05751 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94349 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47154 * 90.00684 * 7 6 5 9 9 H 1.09003 * 110.01152 * 306.38828 * 8 7 6 10 10 C 1.54259 * 110.03368 * 67.83152 * 8 7 6 11 11 C 1.54891 * 104.19663 * 142.89718 * 10 8 7 12 12 C 1.54881 * 102.74603 * 322.05529 * 11 10 8 13 13 C 1.53871 * 110.03177 * 185.00193 * 8 7 6 14 14 H 1.08998 * 110.03385 * 121.38010 * 13 8 7 15 15 C 1.50703 * 110.03452 * 359.97438 * 13 8 7 16 16 H 1.07994 * 119.99603 * 0.02562 * 15 13 8 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 13 8 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 C 1.38266 * 120.11103 * 0.27931 * 6 5 4 24 24 C 1.38149 * 120.05446 * 359.44962 * 23 6 5 25 25 H 1.09002 * 109.46530 * 60.00358 * 1 2 3 26 26 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47328 * 300.01088 * 1 2 3 28 28 H 1.07992 * 120.02782 * 359.94655 * 4 3 2 29 29 H 1.08002 * 119.96944 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47448 * 330.00656 * 7 6 5 31 31 H 1.09008 * 109.46976 * 210.00130 * 7 6 5 32 32 H 1.09000 * 110.48540 * 261.57509 * 10 8 7 33 33 H 1.08997 * 110.48730 * 24.21747 * 10 8 7 34 34 H 1.08999 * 110.75484 * 80.37145 * 11 10 8 35 35 H 1.08998 * 110.75300 * 203.55438 * 11 10 8 36 36 H 1.08993 * 110.49220 * 279.26504 * 12 11 10 37 37 H 1.09004 * 110.48636 * 156.61987 * 12 11 10 38 38 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 39 39 H 1.08001 * 119.97339 * 179.70333 * 23 6 5 40 40 H 1.07998 * 120.02806 * 180.27723 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 6 4.2171 5.4719 -1.4457 9 1 4.7479 4.6976 -1.9997 10 6 2.8669 5.7784 -2.1258 11 6 3.1637 7.0050 -3.0238 12 6 4.1384 7.8373 -2.1543 13 6 5.0257 6.7810 -1.4638 14 1 5.9487 6.6420 -2.0266 15 6 5.3402 7.2130 -0.0547 16 1 5.0014 6.6184 0.7807 17 6 6.0606 8.3673 0.1678 18 7 6.4737 9.0911 -0.8496 19 14 6.4511 8.9025 1.9144 20 1 5.8784 7.9226 2.8721 21 1 5.8613 10.2420 2.1653 22 1 7.9237 8.9685 2.0944 23 6 1.9212 3.6048 0.0042 24 6 1.2916 2.3751 -0.0009 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 4.0208 0.3799 -0.0001 29 1 5.1346 2.5749 -0.0011 30 1 4.9444 4.9384 0.5107 31 1 3.3584 5.7466 0.5108 32 1 2.5438 4.9316 -2.7312 33 1 2.1115 6.0256 -1.3799 34 1 3.6424 6.6965 -3.9532 35 1 2.2505 7.5639 -3.2284 36 1 3.5884 8.4170 -1.4130 37 1 4.7433 8.4931 -2.7806 38 1 6.2712 8.8130 -1.7565 39 1 1.3343 4.5114 0.0086 40 1 0.2130 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584603267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -34.249836 kcal Electronic energy + Delta-G solvation = -19441.130375 eV Core-core repulsion = 16606.134952 eV Total energy + Delta-G solvation = -2834.995423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04769 -38.33154 -36.90019 -32.67356 -31.97558 -30.89740 -28.74873 -27.67456 -26.99213 -24.23501 -23.68038 -22.43781 -20.92890 -19.67118 -18.78345 -18.05781 -16.28563 -16.02342 -15.75676 -15.58365 -14.61188 -14.08256 -13.85346 -13.77227 -13.59672 -13.35422 -12.81631 -12.52967 -12.35194 -12.17480 -11.92048 -11.39077 -10.98126 -10.89491 -10.63864 -10.59272 -10.39088 -10.15260 -9.97290 -9.89477 -9.82040 -9.60370 -9.31421 -8.80172 -8.28184 -8.23558 -7.74907 -6.22349 -3.95654 1.53661 1.66100 3.28723 3.46892 3.49818 3.62395 3.98237 4.58346 4.85132 4.99537 5.01226 5.08560 5.29726 5.33758 5.42908 5.56350 5.59425 5.64369 5.66669 5.71390 5.86751 6.10477 6.23232 6.36540 6.38959 6.43517 6.53127 6.57824 6.62075 6.64316 6.76331 6.83872 6.96527 7.06231 7.14428 7.16365 7.29895 7.43371 7.49001 7.76147 8.35522 8.54458 8.99974 9.76582 11.13771 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.004951 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.459666 B = 5653.767126 C = 6263.379528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.104 3.896 4 C -0.150 4.150 5 C -0.083 4.083 6 C -0.099 4.099 7 C -0.058 4.058 8 C -0.068 4.068 9 H 0.047 0.953 10 C -0.111 4.111 11 C -0.130 4.130 12 C -0.109 4.109 13 C 0.033 3.967 14 H 0.015 0.985 15 C -0.599 4.599 16 H 0.066 0.934 17 C 0.018 3.982 18 N -0.919 5.919 19 Si 1.066 2.934 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.289 1.289 23 C -0.081 4.081 24 C -0.206 4.206 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.273 0.727 39 H 0.122 0.878 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 -13.617 0.591 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.060 3.940 4 C -0.169 4.169 5 C -0.101 4.101 6 C -0.099 4.099 7 C -0.095 4.095 8 C -0.087 4.087 9 H 0.066 0.934 10 C -0.149 4.149 11 C -0.167 4.167 12 C -0.148 4.148 13 C 0.015 3.985 14 H 0.034 0.966 15 C -0.637 4.637 16 H 0.084 0.916 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.896 3.104 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.216 1.216 23 C -0.099 4.099 24 C -0.225 4.225 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.140 0.860 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.881 -12.636 1.491 16.110 hybrid contribution -1.085 -1.012 -0.983 1.780 sum -10.966 -13.648 0.508 17.515 Atomic orbital electron populations 1.22977 0.78950 1.03412 1.01229 1.86026 1.20944 1.27407 1.89351 1.18953 0.92356 0.83845 0.98847 1.20376 0.91214 0.98507 1.06770 1.20951 1.00043 0.90968 0.98156 1.20448 0.93519 0.96860 0.99099 1.20829 1.00287 0.90123 0.98214 1.21613 0.95160 0.98430 0.93505 0.93441 1.22383 0.97832 0.96681 0.97986 1.22556 0.98935 0.97200 0.98057 1.22566 0.96870 0.98163 0.97170 1.19437 0.92809 0.89562 0.96737 0.96650 1.22436 1.38128 1.11112 0.92018 0.91583 1.25707 0.93994 0.93826 1.05107 1.70711 1.44632 1.40029 1.00202 0.83580 0.76417 0.75714 0.74702 1.21555 1.21621 1.21581 1.20914 0.94391 0.96645 0.97966 1.21167 0.99495 0.92533 1.09301 0.92874 0.88648 0.92883 0.85772 0.85401 0.89989 0.90810 0.93685 0.92378 0.93029 0.93414 0.92381 0.93639 0.91540 0.85986 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.16 10.50 -19.42 -0.20 -4.36 16 3 C 0.10 1.48 6.69 -39.22 -0.26 1.22 16 4 C -0.15 -2.15 9.99 -39.43 -0.39 -2.55 16 5 C -0.08 -1.27 9.69 -39.60 -0.38 -1.66 16 6 C -0.10 -1.63 4.90 -104.60 -0.51 -2.14 16 7 C -0.06 -1.09 3.20 -27.88 -0.09 -1.18 16 8 C -0.07 -1.38 2.92 -89.51 -0.26 -1.64 16 9 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 10 C -0.11 -2.01 5.43 -25.08 -0.14 -2.15 16 11 C -0.13 -2.44 6.91 -24.74 -0.17 -2.61 16 12 C -0.11 -2.50 5.31 -25.07 -0.13 -2.63 16 13 C 0.03 0.80 2.50 -90.65 -0.23 0.57 16 14 H 0.02 0.41 7.97 -51.93 -0.41 -0.01 16 15 C -0.60 -15.82 7.50 -34.44 -0.26 -16.08 16 16 H 0.07 1.69 4.66 -52.49 -0.24 1.45 16 17 C 0.02 0.49 5.33 -17.82 -0.09 0.40 16 18 N -0.92 -27.25 13.42 55.43 0.74 -26.50 16 19 Si 1.07 24.93 29.90 -169.99 -5.08 19.84 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 C -0.08 -1.21 8.90 -39.60 -0.35 -1.57 16 24 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.08 1.66 6.69 -51.93 -0.35 1.32 16 31 H 0.07 1.47 7.24 -51.92 -0.38 1.09 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.02 6.92 -51.93 -0.36 0.66 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.42 7.85 -51.93 -0.41 1.01 16 37 H 0.04 1.08 6.89 -51.93 -0.36 0.72 16 38 H 0.27 8.01 5.49 -40.82 -0.22 7.79 16 39 H 0.12 1.71 7.37 -52.49 -0.39 1.33 16 40 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -29.54 312.78 -8.47 -38.01 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.00 Total: 2.21 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: -2.64 Total: -33.91 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.20 Total: -4.36 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.54 -8.47 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584603267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.758 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds