Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00098 * 2 1 4 4 C 1.38733 * 120.05383 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94151 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05751 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94349 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47154 * 90.00684 * 7 6 5 9 9 H 1.09003 * 110.01152 * 306.38828 * 8 7 6 10 10 C 1.54259 * 110.03368 * 67.83152 * 8 7 6 11 11 C 1.54891 * 104.19663 * 142.89718 * 10 8 7 12 12 C 1.54881 * 102.74603 * 322.05529 * 11 10 8 13 13 C 1.53871 * 110.03177 * 185.00193 * 8 7 6 14 14 H 1.08998 * 110.03385 * 121.38010 * 13 8 7 15 15 C 1.50703 * 110.03452 * 359.97438 * 13 8 7 16 16 H 1.07994 * 119.99603 * 0.02562 * 15 13 8 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 13 8 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 C 1.38266 * 120.11103 * 0.27931 * 6 5 4 24 24 C 1.38149 * 120.05446 * 359.44962 * 23 6 5 25 25 H 1.09002 * 109.46530 * 60.00358 * 1 2 3 26 26 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47328 * 300.01088 * 1 2 3 28 28 H 1.07992 * 120.02782 * 359.94655 * 4 3 2 29 29 H 1.08002 * 119.96944 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47448 * 330.00656 * 7 6 5 31 31 H 1.09008 * 109.46976 * 210.00130 * 7 6 5 32 32 H 1.09000 * 110.48540 * 261.57509 * 10 8 7 33 33 H 1.08997 * 110.48730 * 24.21747 * 10 8 7 34 34 H 1.08999 * 110.75484 * 80.37145 * 11 10 8 35 35 H 1.08998 * 110.75300 * 203.55438 * 11 10 8 36 36 H 1.08993 * 110.49220 * 279.26504 * 12 11 10 37 37 H 1.09004 * 110.48636 * 156.61987 * 12 11 10 38 38 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 39 39 H 1.08001 * 119.97339 * 179.70333 * 23 6 5 40 40 H 1.07998 * 120.02806 * 180.27723 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 6 4.2171 5.4719 -1.4457 9 1 4.7479 4.6976 -1.9997 10 6 2.8669 5.7784 -2.1258 11 6 3.1637 7.0050 -3.0238 12 6 4.1384 7.8373 -2.1543 13 6 5.0257 6.7810 -1.4638 14 1 5.9487 6.6420 -2.0266 15 6 5.3402 7.2130 -0.0547 16 1 5.0014 6.6184 0.7807 17 6 6.0606 8.3673 0.1678 18 7 6.4737 9.0911 -0.8496 19 14 6.4511 8.9025 1.9144 20 1 5.8784 7.9226 2.8721 21 1 5.8613 10.2420 2.1653 22 1 7.9237 8.9685 2.0944 23 6 1.9212 3.6048 0.0042 24 6 1.2916 2.3751 -0.0009 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 4.0208 0.3799 -0.0001 29 1 5.1346 2.5749 -0.0011 30 1 4.9444 4.9384 0.5107 31 1 3.3584 5.7466 0.5108 32 1 2.5438 4.9316 -2.7312 33 1 2.1115 6.0256 -1.3799 34 1 3.6424 6.6965 -3.9532 35 1 2.2505 7.5639 -3.2284 36 1 3.5884 8.4170 -1.4130 37 1 4.7433 8.4931 -2.7806 38 1 6.2712 8.8130 -1.7565 39 1 1.3343 4.5114 0.0086 40 1 0.2130 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584603267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -48.779236 kcal Electronic energy + Delta-G solvation = -19441.760417 eV Core-core repulsion = 16606.134952 eV Total energy + Delta-G solvation = -2835.625465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12273 -39.78884 -38.16963 -34.65548 -33.39603 -31.99120 -30.14728 -29.24628 -28.03469 -25.88101 -25.48590 -23.53468 -22.13196 -21.30692 -20.63170 -19.05248 -18.13556 -17.19179 -17.04743 -16.59046 -15.95381 -15.72402 -15.44208 -15.07288 -14.94589 -14.49046 -14.23596 -14.10018 -13.80479 -13.51978 -12.89270 -12.80378 -12.64655 -12.43133 -12.20476 -11.93505 -11.92654 -11.68136 -11.64015 -11.56529 -11.38856 -11.24845 -11.07878 -10.38593 -10.21512 -9.90517 -8.92719 -8.43051 -6.15982 0.43493 0.51769 1.55219 1.63332 1.78287 2.42437 2.63285 2.84520 3.32203 3.86539 3.89836 4.00327 4.04199 4.06920 4.23318 4.32366 4.41863 4.49589 4.52346 4.62434 4.70213 4.76006 4.83197 4.85175 4.88634 4.92267 5.04604 5.07265 5.15838 5.29487 5.30201 5.37147 5.42363 5.46919 5.56523 5.66209 5.76921 5.87725 5.90989 6.27870 6.40626 6.50298 6.82870 7.64142 8.93235 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.004951 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.459666 B = 5653.767126 C = 6263.379528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.105 3.895 4 C -0.158 4.158 5 C -0.090 4.090 6 C -0.118 4.118 7 C -0.044 4.044 8 C -0.065 4.065 9 H 0.047 0.953 10 C -0.100 4.100 11 C -0.121 4.121 12 C -0.104 4.104 13 C 0.022 3.978 14 H -0.020 1.020 15 C -0.599 4.599 16 H 0.073 0.927 17 C -0.037 4.037 18 N -0.951 5.951 19 Si 1.110 2.890 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.287 1.287 23 C -0.083 4.083 24 C -0.203 4.203 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.062 0.938 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.131 0.869 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 -15.505 1.071 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.060 3.940 4 C -0.176 4.176 5 C -0.108 4.108 6 C -0.118 4.118 7 C -0.081 4.081 8 C -0.084 4.084 9 H 0.065 0.935 10 C -0.138 4.138 11 C -0.158 4.158 12 C -0.143 4.143 13 C 0.004 3.996 14 H -0.002 1.002 15 C -0.636 4.636 16 H 0.091 0.909 17 C -0.234 4.234 18 N -0.590 5.590 19 Si 0.934 3.066 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.213 1.213 23 C -0.101 4.101 24 C -0.221 4.221 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.149 0.851 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.304 -14.550 1.968 19.156 hybrid contribution -0.381 -0.545 -1.153 1.331 sum -12.686 -15.095 0.815 19.734 Atomic orbital electron populations 1.23319 0.76650 1.05462 1.02140 1.86024 1.23326 1.26696 1.88972 1.19116 0.92465 0.84668 0.97725 1.20546 0.91933 0.98530 1.06633 1.21001 1.00231 0.91238 0.98378 1.20177 0.94333 0.95474 1.01792 1.20509 0.99175 0.91678 0.96761 1.21532 0.95882 0.96044 0.94926 0.93490 1.22309 0.96469 0.96997 0.98011 1.22511 0.98706 0.96895 0.97693 1.22367 0.97154 0.97749 0.96992 1.19491 0.92432 0.92411 0.95290 1.00168 1.22853 1.36779 1.10532 0.93480 0.90915 1.27032 0.94114 0.94473 1.07803 1.70823 1.46806 1.41223 1.00167 0.83015 0.76427 0.75967 0.71224 1.19354 1.21232 1.21335 1.21019 0.93690 0.97745 0.97641 1.21410 1.00933 0.91609 1.08165 0.91918 0.86253 0.91894 0.84413 0.85372 0.92312 0.92094 0.91348 0.91563 0.92043 0.91029 0.94519 0.95768 0.92834 0.85097 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.60 10.50 -92.40 -0.97 -8.57 16 3 C 0.11 2.69 6.69 22.51 0.15 2.84 16 4 C -0.16 -4.24 9.99 22.37 0.22 -4.02 16 5 C -0.09 -2.68 9.69 22.25 0.22 -2.47 16 6 C -0.12 -3.72 4.90 -19.85 -0.10 -3.82 16 7 C -0.04 -1.66 3.20 29.85 0.10 -1.57 16 8 C -0.07 -2.62 2.92 -10.07 -0.03 -2.64 16 9 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 10 C -0.10 -3.42 5.43 31.67 0.17 -3.25 16 11 C -0.12 -4.35 6.91 31.88 0.22 -4.13 16 12 C -0.10 -4.88 5.31 31.67 0.17 -4.72 16 13 C 0.02 1.11 2.50 -10.81 -0.03 1.08 16 14 H -0.02 -1.11 7.97 -2.39 -0.02 -1.13 16 15 C -0.60 -32.45 7.50 25.60 0.19 -32.26 16 16 H 0.07 3.78 4.66 -2.91 -0.01 3.77 16 17 C -0.04 -2.09 5.33 84.65 0.45 -1.64 16 18 N -0.95 -58.52 13.42 21.45 0.29 -58.23 16 19 Si 1.11 50.78 29.90 68.60 2.05 52.83 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 23 C -0.08 -2.28 8.90 22.26 0.20 -2.08 16 24 C -0.20 -4.84 9.04 22.37 0.20 -4.64 16 25 H 0.06 0.74 7.66 -2.39 -0.02 0.73 16 26 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 28 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.06 2.44 6.69 -2.39 -0.02 2.42 16 31 H 0.06 2.42 7.24 -2.38 -0.02 2.40 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.16 6.92 -2.39 -0.02 2.14 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.04 1.83 7.85 -2.39 -0.02 1.81 16 37 H 0.02 1.19 6.89 -2.39 -0.02 1.18 16 38 H 0.26 16.16 5.49 -92.71 -0.51 15.65 16 39 H 0.13 3.31 7.37 -2.91 -0.02 3.29 16 40 H 0.15 2.65 6.30 -2.91 -0.02 2.63 16 Total: -1.00 -65.11 312.78 5.89 -59.22 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.27 Total: 16.69 kcal Atomic # 6 Polarization: -65.18 SS G_CDS: 3.25 Total: -61.94 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.29 Total: -58.23 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.97 Total: -8.57 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -65.11 5.89 -59.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584603267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.438 kcal (2) G-P(sol) polarization free energy of solvation -65.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds