Wall clock time and date at job start Mon Mar 30 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00372 * 2 1 4 4 H 1.48501 * 109.47199 * 240.00581 * 3 2 1 5 5 H 1.48503 * 109.46798 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47305 * 120.00070 * 3 2 1 7 7 C 1.38809 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00123 * 156.24806 * 7 2 1 9 9 N 1.36931 * 120.00057 * 336.51719 * 7 2 1 10 10 C 1.46335 * 119.68775 * 149.09266 * 9 7 2 11 11 C 1.53855 * 108.99128 * 68.19902 * 10 9 7 12 12 C 1.53237 * 108.95990 * 74.22753 * 11 10 9 13 13 N 1.46329 * 109.28131 * 285.63599 * 12 11 10 14 14 C 1.39681 * 119.69198 * 292.05455 * 13 12 11 15 15 C 1.38907 * 120.07614 * 179.74334 * 14 13 12 16 16 C 1.38108 * 119.92132 * 179.77550 * 15 14 13 17 17 C 1.38283 * 120.07711 * 0.50365 * 16 15 14 18 18 C 1.38291 * 120.14794 * 359.74549 * 17 16 15 19 19 C 1.38099 * 120.07260 * 0.02562 * 18 17 16 20 20 C 1.46328 * 120.62264 * 112.07670 * 13 12 11 21 21 C 1.53257 * 109.26210 * 247.90090 * 20 13 12 22 22 C 1.46330 * 119.68912 * 329.36778 * 9 7 2 23 23 H 0.97002 * 119.99633 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.50189 * 187.86520 * 10 9 7 25 25 H 1.08991 * 109.50515 * 307.99079 * 10 9 7 26 26 H 1.09000 * 109.54207 * 314.37290 * 11 10 9 27 27 H 1.08999 * 109.61041 * 194.12407 * 11 10 9 28 28 H 1.09004 * 109.50006 * 165.69658 * 12 11 10 29 29 H 1.08999 * 109.50514 * 45.58141 * 12 11 10 30 30 H 1.08001 * 120.03864 * 0.02562 * 15 14 13 31 31 H 1.08007 * 119.96138 * 180.25692 * 16 15 14 32 32 H 1.08001 * 119.92398 * 179.77518 * 17 16 15 33 33 H 1.07997 * 119.95976 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.03324 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.50744 * 127.96257 * 20 13 12 36 36 H 1.09006 * 109.50458 * 7.83573 * 20 13 12 37 37 H 1.08994 * 109.56797 * 314.54432 * 21 20 13 38 38 H 1.09003 * 109.66866 * 194.23901 * 21 20 13 39 39 H 1.09002 * 109.50823 * 51.98722 * 22 9 7 40 40 H 1.09002 * 109.50382 * 172.06700 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0216 -1.2416 -0.3773 9 7 1.4106 -2.3391 0.4715 10 6 1.7734 -3.6386 -0.0952 11 6 3.2221 -3.9711 0.3019 12 6 3.2538 -4.3703 1.7810 13 7 3.0947 -3.1736 2.6080 14 6 4.1080 -2.2127 2.6367 15 6 3.9629 -1.0712 3.4148 16 6 4.9689 -0.1253 3.4445 17 6 6.1150 -0.3087 2.6928 18 6 6.2603 -1.4415 1.9131 19 6 5.2604 -2.3935 1.8824 20 6 1.8841 -2.9743 3.4055 21 6 1.0892 -1.7962 2.8321 22 6 0.4087 -2.2426 1.5336 23 1 -0.4850 0.8401 0.0004 24 1 1.1051 -4.4056 0.2962 25 1 1.6867 -3.5991 -1.1810 26 1 3.8529 -3.0959 0.1463 27 1 3.5879 -4.7976 -0.3073 28 1 4.2077 -4.8461 2.0091 29 1 2.4408 -5.0662 1.9876 30 1 3.0663 -0.9254 3.9990 31 1 4.8586 0.7605 4.0525 32 1 6.8985 0.4343 2.7150 33 1 7.1565 -1.5814 1.3268 34 1 5.3747 -3.2782 1.2736 35 1 2.1597 -2.7594 4.4379 36 1 1.2732 -3.8765 3.3715 37 1 1.7649 -0.9668 2.6237 38 1 0.3330 -1.4795 3.5505 39 1 -0.3514 -1.5138 1.2520 40 1 -0.0583 -3.2162 1.6829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584615927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:23 Heat of formation + Delta-G solvation = 64.426623 kcal Electronic energy + Delta-G solvation = -21220.541553 eV Core-core repulsion = 18422.117813 eV Total energy + Delta-G solvation = -2798.423739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.37341 -36.97272 -34.70894 -33.34072 -31.36651 -30.05060 -29.54817 -27.42999 -25.98486 -24.83442 -22.74088 -21.66886 -20.34837 -20.13078 -19.68268 -16.88477 -16.24316 -15.65082 -15.15173 -14.85057 -14.34387 -13.80048 -13.72010 -13.34994 -12.89881 -12.77095 -12.56692 -12.48185 -12.13937 -11.78870 -11.39257 -11.19747 -11.11364 -10.77902 -10.69924 -10.61632 -10.37555 -10.14881 -9.96148 -9.81085 -9.63731 -9.51979 -9.05244 -8.38487 -8.22706 -6.61657 -6.39185 -5.55344 -3.13892 2.09827 2.31526 3.47413 3.51847 3.60221 3.81169 4.58340 4.62807 5.30359 5.42936 5.48756 5.56504 5.59661 5.63995 5.73482 5.77307 5.90597 6.00984 6.05582 6.11669 6.16479 6.28546 6.32513 6.43164 6.51285 6.60044 6.66886 6.72271 6.84719 6.96179 6.97348 7.08427 7.13475 7.24480 7.44283 7.52672 7.84304 7.98582 8.06372 8.23362 8.61247 9.35071 10.00136 10.51410 11.36161 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.012524 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.669616 B = 2235.194572 C = 3072.554433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.231 4.231 8 H 0.057 0.943 9 N -0.577 5.577 10 C 0.154 3.846 11 C -0.172 4.172 12 C 0.139 3.861 13 N -0.600 5.600 14 C 0.253 3.747 15 C -0.190 4.190 16 C -0.076 4.076 17 C -0.196 4.196 18 C -0.079 4.079 19 C -0.200 4.200 20 C 0.136 3.864 21 C -0.163 4.163 22 C 0.145 3.855 23 H 0.250 0.750 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -6.674 6.525 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.361 4.361 8 H 0.075 0.925 9 N -0.297 5.297 10 C 0.027 3.973 11 C -0.213 4.213 12 C 0.016 3.984 13 N -0.307 5.307 14 C 0.149 3.851 15 C -0.213 4.213 16 C -0.095 4.095 17 C -0.216 4.216 18 C -0.098 4.098 19 C -0.223 4.223 20 C 0.012 3.988 21 C -0.203 4.203 22 C 0.019 3.981 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.138 -6.722 6.513 11.193 hybrid contribution 0.402 1.074 -0.106 1.152 sum 6.540 -5.648 6.407 10.758 Atomic orbital electron populations 1.69899 1.05397 1.25118 1.53412 1.24837 0.94734 0.98033 1.01593 0.86639 0.79354 0.84079 0.78634 1.21144 1.22075 1.20439 1.18775 0.94758 0.86003 1.36526 0.92547 1.43659 1.46725 1.01061 1.38305 1.20919 0.92056 0.88220 0.96142 1.22978 1.02080 1.01186 0.95056 1.21312 0.99756 0.86347 0.91011 1.46285 1.16371 1.20076 1.48011 1.17564 0.87257 0.88353 0.91956 1.20647 1.00311 0.95243 1.05075 1.20748 0.93379 0.97487 0.97906 1.20665 0.99101 0.99230 1.02640 1.20714 0.97689 0.93874 0.97504 1.20603 0.94975 1.01934 1.04747 1.21452 0.85622 0.99077 0.92628 1.22719 0.99606 0.98932 0.99044 1.21113 0.93150 0.98048 0.85819 0.93965 0.94635 0.95261 0.89937 0.93188 0.93406 0.91559 0.86467 0.87359 0.87631 0.87301 0.86599 0.93695 0.91808 0.89568 0.93685 0.89000 0.96572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 11.08 55.49 0.61 -25.08 16 2 C 0.01 0.18 4.84 -17.43 -0.08 0.10 16 3 Si 0.88 22.45 29.62 -169.99 -5.03 17.41 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.17 8.34 -15.06 -0.13 -6.30 16 8 H 0.06 1.58 7.08 -52.49 -0.37 1.21 16 9 N -0.58 -13.66 1.96 -172.83 -0.34 -14.00 16 10 C 0.15 3.12 6.01 -3.69 -0.02 3.10 16 11 C -0.17 -3.00 5.27 -26.16 -0.14 -3.14 16 12 C 0.14 2.19 5.33 -4.01 -0.02 2.17 16 13 N -0.60 -10.57 2.09 -171.72 -0.36 -10.92 16 14 C 0.25 4.77 6.05 -83.78 -0.51 4.26 16 15 C -0.19 -3.63 7.97 -39.38 -0.31 -3.94 16 16 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 17 C -0.20 -3.37 10.04 -39.55 -0.40 -3.77 16 18 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 19 C -0.20 -3.59 7.97 -39.38 -0.31 -3.90 16 20 C 0.14 2.29 5.32 -4.00 -0.02 2.27 16 21 C -0.16 -3.28 5.24 -26.47 -0.14 -3.42 16 22 C 0.14 3.28 5.43 -4.01 -0.02 3.26 16 23 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.04 0.66 7.33 -51.93 -0.38 0.28 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.66 4.54 -51.93 -0.24 1.43 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.68 7.49 -51.93 -0.39 0.29 16 29 H 0.07 0.96 7.33 -51.93 -0.38 0.58 16 30 H 0.12 2.18 5.56 -52.49 -0.29 1.89 16 31 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.12 1.93 5.58 -52.49 -0.29 1.64 16 35 H 0.04 0.70 7.50 -51.93 -0.39 0.31 16 36 H 0.06 0.99 7.32 -51.93 -0.38 0.61 16 37 H 0.09 2.02 4.89 -51.93 -0.25 1.76 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 2.44 5.46 -51.93 -0.28 2.16 16 40 H 0.02 0.33 7.32 -51.93 -0.38 -0.05 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -29.05 298.25 -9.22 -38.27 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.70 Total: 2.65 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.90 Total: -12.82 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.08 Total: -50.01 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.05 -9.22 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584615927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.698 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds