Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00372 * 2 1 4 4 H 1.48501 * 109.47199 * 240.00581 * 3 2 1 5 5 H 1.48503 * 109.46798 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47305 * 120.00070 * 3 2 1 7 7 C 1.38809 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00123 * 156.24806 * 7 2 1 9 9 N 1.36931 * 120.00057 * 336.51719 * 7 2 1 10 10 C 1.46335 * 119.68775 * 149.09266 * 9 7 2 11 11 C 1.53855 * 108.99128 * 68.19902 * 10 9 7 12 12 C 1.53237 * 108.95990 * 74.22753 * 11 10 9 13 13 N 1.46329 * 109.28131 * 285.63599 * 12 11 10 14 14 C 1.39681 * 119.69198 * 292.05455 * 13 12 11 15 15 C 1.38907 * 120.07614 * 179.74334 * 14 13 12 16 16 C 1.38108 * 119.92132 * 179.77550 * 15 14 13 17 17 C 1.38283 * 120.07711 * 0.50365 * 16 15 14 18 18 C 1.38291 * 120.14794 * 359.74549 * 17 16 15 19 19 C 1.38099 * 120.07260 * 0.02562 * 18 17 16 20 20 C 1.46328 * 120.62264 * 112.07670 * 13 12 11 21 21 C 1.53257 * 109.26210 * 247.90090 * 20 13 12 22 22 C 1.46330 * 119.68912 * 329.36778 * 9 7 2 23 23 H 0.97002 * 119.99633 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.50189 * 187.86520 * 10 9 7 25 25 H 1.08991 * 109.50515 * 307.99079 * 10 9 7 26 26 H 1.09000 * 109.54207 * 314.37290 * 11 10 9 27 27 H 1.08999 * 109.61041 * 194.12407 * 11 10 9 28 28 H 1.09004 * 109.50006 * 165.69658 * 12 11 10 29 29 H 1.08999 * 109.50514 * 45.58141 * 12 11 10 30 30 H 1.08001 * 120.03864 * 0.02562 * 15 14 13 31 31 H 1.08007 * 119.96138 * 180.25692 * 16 15 14 32 32 H 1.08001 * 119.92398 * 179.77518 * 17 16 15 33 33 H 1.07997 * 119.95976 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.03324 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.50744 * 127.96257 * 20 13 12 36 36 H 1.09006 * 109.50458 * 7.83573 * 20 13 12 37 37 H 1.08994 * 109.56797 * 314.54432 * 21 20 13 38 38 H 1.09003 * 109.66866 * 194.23901 * 21 20 13 39 39 H 1.09002 * 109.50823 * 51.98722 * 22 9 7 40 40 H 1.09002 * 109.50382 * 172.06700 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0216 -1.2416 -0.3773 9 7 1.4106 -2.3391 0.4715 10 6 1.7734 -3.6386 -0.0952 11 6 3.2221 -3.9711 0.3019 12 6 3.2538 -4.3703 1.7810 13 7 3.0947 -3.1736 2.6080 14 6 4.1080 -2.2127 2.6367 15 6 3.9629 -1.0712 3.4148 16 6 4.9689 -0.1253 3.4445 17 6 6.1150 -0.3087 2.6928 18 6 6.2603 -1.4415 1.9131 19 6 5.2604 -2.3935 1.8824 20 6 1.8841 -2.9743 3.4055 21 6 1.0892 -1.7962 2.8321 22 6 0.4087 -2.2426 1.5336 23 1 -0.4850 0.8401 0.0004 24 1 1.1051 -4.4056 0.2962 25 1 1.6867 -3.5991 -1.1810 26 1 3.8529 -3.0959 0.1463 27 1 3.5879 -4.7976 -0.3073 28 1 4.2077 -4.8461 2.0091 29 1 2.4408 -5.0662 1.9876 30 1 3.0663 -0.9254 3.9990 31 1 4.8586 0.7605 4.0525 32 1 6.8985 0.4343 2.7150 33 1 7.1565 -1.5814 1.3268 34 1 5.3747 -3.2782 1.2736 35 1 2.1597 -2.7594 4.4379 36 1 1.2732 -3.8765 3.3715 37 1 1.7649 -0.9668 2.6237 38 1 0.3330 -1.4795 3.5505 39 1 -0.3514 -1.5138 1.2520 40 1 -0.0583 -3.2162 1.6829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584615927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = 50.500954 kcal Electronic energy + Delta-G solvation = -21221.145415 eV Core-core repulsion = 18422.117813 eV Total energy + Delta-G solvation = -2799.027602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75046 -38.49253 -36.33981 -34.82393 -33.29710 -31.41877 -31.02755 -29.00562 -27.48820 -26.73149 -24.16091 -23.02631 -22.10534 -21.64207 -21.08569 -18.53474 -17.89680 -17.21829 -16.65960 -16.43032 -15.95781 -15.49853 -15.29426 -14.76912 -14.46005 -14.31590 -14.05925 -13.91166 -13.69192 -13.26942 -12.94104 -12.82955 -12.69106 -12.67133 -12.44621 -12.16812 -11.99116 -11.87159 -11.57037 -11.40468 -11.35024 -11.17247 -10.55381 -10.34173 -9.59346 -8.49856 -7.89323 -7.57773 -5.22624 0.73535 0.96042 1.40685 1.44278 1.52798 2.51328 2.56951 3.22131 3.34879 3.82541 4.07153 4.12212 4.27376 4.29093 4.36212 4.47340 4.57748 4.64301 4.69870 4.75583 4.76895 4.84657 4.91963 4.99137 5.01855 5.11900 5.22161 5.23208 5.29537 5.36132 5.56027 5.66312 5.71065 5.76211 5.82641 5.89581 6.01596 6.21146 6.54177 6.74351 6.88360 7.31241 8.06011 8.48779 9.23648 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.012524 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.669616 B = 2235.194572 C = 3072.554433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.036 4.036 3 Si 0.924 3.076 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.282 1.282 7 C -0.212 4.212 8 H 0.041 0.959 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.160 4.160 12 C 0.139 3.861 13 N -0.605 5.605 14 C 0.238 3.762 15 C -0.212 4.212 16 C -0.092 4.092 17 C -0.205 4.205 18 C -0.085 4.085 19 C -0.211 4.211 20 C 0.142 3.858 21 C -0.153 4.153 22 C 0.145 3.855 23 H 0.243 0.757 24 H 0.057 0.943 25 H 0.010 0.990 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.660 -8.399 7.134 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.232 4.232 3 Si 0.755 3.245 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.209 1.209 7 C -0.344 4.344 8 H 0.059 0.941 9 N -0.306 5.306 10 C 0.022 3.978 11 C -0.201 4.201 12 C 0.016 3.984 13 N -0.312 5.312 14 C 0.134 3.866 15 C -0.235 4.235 16 C -0.111 4.111 17 C -0.225 4.225 18 C -0.104 4.104 19 C -0.233 4.233 20 C 0.018 3.982 21 C -0.193 4.193 22 C 0.020 3.980 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.367 -8.474 7.123 13.297 hybrid contribution 0.047 1.557 -0.326 1.591 sum 7.414 -6.917 6.797 12.207 Atomic orbital electron populations 1.70027 1.06128 1.24832 1.55546 1.25232 0.95159 0.99817 1.03012 0.85977 0.78278 0.82129 0.78134 1.21231 1.22516 1.20887 1.18724 0.93887 0.87156 1.34622 0.94126 1.43806 1.46507 1.01514 1.38725 1.21098 0.94535 0.87133 0.95034 1.22798 0.99016 1.01111 0.97137 1.21448 1.01784 0.85952 0.89211 1.46434 1.16081 1.20406 1.48301 1.17768 0.87996 0.88686 0.92193 1.20781 1.00632 0.96114 1.05932 1.21050 0.93688 0.97913 0.98454 1.21005 0.99374 0.99921 1.02247 1.21097 0.98450 0.93459 0.97345 1.20841 0.94989 1.02690 1.04770 1.21411 0.85358 0.98366 0.93041 1.22536 0.99345 0.99267 0.98183 1.21002 0.92384 0.98021 0.86634 0.94702 0.92479 0.97170 0.92725 0.90208 0.91239 0.89521 0.86963 0.86100 0.85438 0.84697 0.85500 0.92200 0.89559 0.92949 0.92767 0.92911 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 11.08 21.65 0.24 -53.73 16 2 C -0.04 -2.05 4.84 84.86 0.41 -1.64 16 3 Si 0.92 46.95 29.62 68.60 2.03 48.98 16 4 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 5 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 6 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.21 -11.43 8.34 84.03 0.70 -10.73 16 8 H 0.04 2.31 7.08 -2.91 -0.02 2.29 16 9 N -0.58 -27.29 1.96 -700.71 -1.37 -28.67 16 10 C 0.15 5.73 6.01 86.70 0.52 6.25 16 11 C -0.16 -5.14 5.27 30.96 0.16 -4.97 16 12 C 0.14 3.84 5.33 86.49 0.46 4.30 16 13 N -0.60 -19.82 2.09 -697.19 -1.46 -21.28 16 14 C 0.24 8.63 6.05 38.21 0.23 8.86 16 15 C -0.21 -7.97 7.97 22.40 0.18 -7.79 16 16 C -0.09 -3.26 10.04 22.25 0.22 -3.03 16 17 C -0.21 -6.72 10.04 22.29 0.22 -6.50 16 18 C -0.08 -2.72 10.04 22.25 0.22 -2.49 16 19 C -0.21 -7.16 7.97 22.40 0.18 -6.98 16 20 C 0.14 4.44 5.32 86.50 0.46 4.90 16 21 C -0.15 -6.04 5.24 30.76 0.16 -5.88 16 22 C 0.15 6.49 5.43 86.49 0.47 6.96 16 23 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 24 H 0.06 1.95 7.33 -2.38 -0.02 1.94 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.05 2.10 4.54 -2.39 -0.01 2.09 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 1.67 7.49 -2.38 -0.02 1.65 16 29 H 0.09 2.08 7.33 -2.39 -0.02 2.06 16 30 H 0.11 4.19 5.56 -2.91 -0.02 4.17 16 31 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.13 3.92 5.58 -2.91 -0.02 3.90 16 35 H 0.06 1.72 7.50 -2.39 -0.02 1.70 16 36 H 0.09 2.33 7.32 -2.38 -0.02 2.31 16 37 H 0.05 2.45 4.89 -2.39 -0.01 2.44 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 2.85 5.46 -2.39 -0.01 2.84 16 40 H 0.04 1.47 7.32 -2.39 -0.02 1.45 16 Total: -1.00 -63.02 298.25 5.08 -57.94 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.03 Total: 15.49 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.61 Total: -18.74 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -2.59 Total: -103.67 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -63.02 5.08 -57.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584615927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.445 kcal (2) G-P(sol) polarization free energy of solvation -63.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds