Wall clock time and date at job start Mon Mar 30 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48497 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46782 * 299.99520 * 3 2 1 6 6 H 1.48494 * 109.47298 * 59.99538 * 3 2 1 7 7 C 1.37875 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47532 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47329 * 180.02562 * 10 9 7 12 12 C 1.46843 * 111.00022 * 65.79046 * 11 10 9 13 13 C 1.53039 * 109.52391 * 185.84211 * 12 11 10 14 14 C 1.53124 * 109.27498 * 300.81655 * 13 12 11 15 15 C 1.53126 * 109.15878 * 57.65601 * 14 13 12 16 16 H 1.08994 * 109.50285 * 62.28827 * 15 14 13 17 17 C 1.50700 * 109.49862 * 182.36196 * 15 14 13 18 18 C 1.38223 * 119.62140 * 35.00540 * 17 15 14 19 19 C 1.38627 * 119.16358 * 179.97438 * 18 17 15 20 20 C 1.38671 * 118.41823 * 359.97438 * 19 18 17 21 21 C 1.38179 * 119.16468 * 359.97438 * 20 19 18 22 22 N 1.31857 * 119.61758 * 214.72249 * 17 15 14 23 23 C 1.46854 * 111.00034 * 189.99924 * 11 10 9 24 24 H 0.97002 * 120.00116 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47225 * 59.99404 * 9 7 2 26 26 H 1.09005 * 109.47085 * 299.99945 * 9 7 2 27 27 H 1.09000 * 109.47288 * 60.00027 * 10 9 7 28 28 H 1.09005 * 109.46879 * 300.00057 * 10 9 7 29 29 H 1.09001 * 109.45906 * 305.85080 * 12 11 10 30 30 H 1.08994 * 109.46526 * 65.83386 * 12 11 10 31 31 H 1.08997 * 109.50468 * 180.87980 * 13 12 11 32 32 H 1.09004 * 109.50358 * 60.75551 * 13 12 11 33 33 H 1.08998 * 109.52745 * 297.74929 * 14 13 12 34 34 H 1.08999 * 109.52030 * 177.55385 * 14 13 12 35 35 H 1.08007 * 120.41770 * 359.97438 * 18 17 15 36 36 H 1.08000 * 120.79095 * 180.02562 * 19 18 17 37 37 H 1.08004 * 120.41624 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.61808 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.45788 * 54.14266 * 23 11 10 40 40 H 1.09001 * 109.46218 * 294.17869 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 0.7622 -5.1091 -1.2499 13 6 -0.1023 -6.3686 -1.1570 14 6 0.7974 -7.5817 -0.9049 15 6 1.6017 -7.3530 0.3779 16 1 0.9200 -7.2638 1.2237 17 6 2.5324 -8.5168 0.6023 18 6 3.1105 -9.1484 -0.4828 19 6 3.9656 -10.2176 -0.2654 20 6 4.2088 -10.6131 1.0413 21 6 3.5955 -9.9328 2.0759 22 7 2.7902 -8.9173 1.8319 23 6 2.4166 -6.0651 0.2404 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8712 -3.6040 0.8923 28 1 2.8726 -3.6047 -0.8877 29 1 0.1233 -4.2416 -1.4151 30 1 1.4610 -5.2090 -2.0804 31 1 -0.6459 -6.5066 -2.0916 32 1 -0.8107 -6.2639 -0.3352 33 1 1.4801 -7.7098 -1.7449 34 1 0.1822 -8.4747 -0.7947 35 1 2.8987 -8.8130 -1.4874 36 1 4.4320 -10.7299 -1.0939 37 1 4.8698 -11.4419 1.2477 38 1 3.7793 -10.2349 3.0964 39 1 2.9794 -5.8917 1.1577 40 1 3.1078 -6.1602 -0.5970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590600915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:09 Heat of formation + Delta-G solvation = 22.189194 kcal Electronic energy + Delta-G solvation = -19054.642352 eV Core-core repulsion = 16254.387060 eV Total energy + Delta-G solvation = -2800.255292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53975 -38.48003 -34.60221 -32.83387 -32.60442 -31.77805 -29.70414 -28.75865 -25.12838 -24.20747 -23.68172 -22.63445 -21.82441 -19.98727 -19.38580 -17.05494 -16.44319 -16.28639 -15.59711 -15.05434 -14.71441 -14.41677 -14.37333 -13.96520 -13.70817 -13.30116 -13.04152 -12.97419 -12.54148 -12.16277 -12.09173 -11.64936 -11.17073 -11.10269 -10.92514 -10.67160 -10.54638 -10.33740 -10.22090 -9.99544 -9.77877 -9.52429 -9.32880 -9.09326 -8.98536 -8.30255 -7.67196 -5.96959 -3.99020 0.97399 1.14757 3.33045 3.40386 3.44489 3.65967 4.05202 4.43398 4.54770 4.65685 4.71913 4.88827 4.97509 5.06951 5.08666 5.15006 5.38994 5.44918 5.52227 5.60567 5.65807 5.77717 5.87595 5.89909 5.93668 6.05373 6.07031 6.15087 6.31388 6.33478 6.45420 6.55022 6.60271 6.61301 7.00972 7.55162 7.63262 7.83788 7.92410 7.94158 8.12094 8.46968 9.08446 9.64450 11.14446 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034781 B = 0.003764 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.852900 B = 7437.275464 C = 7868.310175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.536 5.536 12 C 0.052 3.948 13 C -0.115 4.115 14 C -0.112 4.112 15 C -0.038 4.038 16 H 0.099 0.901 17 C 0.146 3.854 18 C -0.171 4.171 19 C -0.076 4.076 20 C -0.185 4.185 21 C 0.100 3.900 22 N -0.480 5.480 23 C 0.071 3.929 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.025 0.975 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.073 0.927 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.295 -21.486 -1.776 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.062 4.062 11 N -0.261 5.261 12 C -0.076 4.076 13 C -0.153 4.153 14 C -0.150 4.150 15 C -0.057 4.057 16 H 0.117 0.883 17 C 0.008 3.992 18 C -0.191 4.191 19 C -0.102 4.102 20 C -0.205 4.205 21 C -0.057 4.057 22 N -0.189 5.189 23 C -0.058 4.058 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.107 0.893 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.171 0.829 39 H 0.091 0.909 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.428 -20.910 -0.689 21.385 hybrid contribution 1.591 0.379 -1.353 2.123 sum 6.019 -20.532 -2.042 21.493 Atomic orbital electron populations 1.69982 1.05995 1.26418 1.50825 1.24990 0.94830 0.99151 0.95364 0.86549 0.80094 0.83876 0.77558 1.19800 1.21070 1.20981 1.21238 0.93016 0.91087 1.50627 0.92789 1.19106 0.93974 0.90033 0.97834 1.22322 0.96745 0.88241 0.98917 1.61967 1.27394 1.02118 1.34575 1.22137 0.96849 0.98509 0.90066 1.21594 0.98019 0.93802 1.01917 1.21702 0.98286 0.98609 0.96389 1.20154 0.95379 0.90364 0.99820 0.88288 1.21331 0.94592 0.95174 0.88116 1.22061 0.98788 0.97396 1.00810 1.21582 0.95809 0.95543 0.97236 1.22109 1.02368 1.02172 0.93844 1.22774 0.92234 0.91061 0.99623 1.67550 1.14648 1.13242 1.23450 1.21957 0.93562 0.89849 1.00424 0.93081 0.96428 0.95638 0.92104 0.96318 0.89345 0.95730 0.91633 0.90862 0.92073 0.91944 0.84662 0.85041 0.85051 0.82866 0.90902 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.73 4.90 -27.89 -0.14 0.60 16 10 C 0.06 1.40 4.90 -3.83 -0.02 1.38 16 11 N -0.54 -10.01 4.66 -234.67 -1.09 -11.10 16 12 C 0.05 0.88 5.29 -3.83 -0.02 0.86 16 13 C -0.12 -1.55 6.09 -26.65 -0.16 -1.72 16 14 C -0.11 -1.34 4.77 -26.60 -0.13 -1.46 16 15 C -0.04 -0.52 2.67 -91.69 -0.24 -0.76 16 16 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 17 C 0.15 1.89 5.79 -82.59 -0.48 1.41 16 18 C -0.17 -1.84 9.18 -39.44 -0.36 -2.20 16 19 C -0.08 -0.68 10.18 -39.28 -0.40 -1.08 16 20 C -0.19 -1.62 10.11 -39.44 -0.40 -2.02 16 21 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 22 N -0.48 -6.52 10.27 -9.48 -0.10 -6.61 16 23 C 0.07 1.13 4.73 -3.83 -0.02 1.11 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.48 6.43 -51.93 -0.33 0.15 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.32 7.99 -51.93 -0.41 0.91 16 28 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.09 1.68 6.21 -51.93 -0.32 1.36 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.67 6.38 -51.93 -0.33 0.34 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.14 1.27 6.27 -52.48 -0.33 0.94 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 320.07 15.07 4.82 4.82 Total: -1.00 -31.54 320.07 -9.96 -41.50 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.34 Total: -2.43 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.97 Total: -16.70 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.45 Total: -44.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.54 -9.96 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590600915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.691 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds