Wall clock time and date at job start Mon Mar 30 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48497 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46782 * 299.99520 * 3 2 1 6 6 H 1.48494 * 109.47298 * 59.99538 * 3 2 1 7 7 C 1.37875 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47532 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47329 * 180.02562 * 10 9 7 12 12 C 1.46843 * 111.00022 * 65.79046 * 11 10 9 13 13 C 1.53039 * 109.52391 * 185.84211 * 12 11 10 14 14 C 1.53124 * 109.27498 * 300.81655 * 13 12 11 15 15 C 1.53126 * 109.15878 * 57.65601 * 14 13 12 16 16 H 1.08994 * 109.50285 * 62.28827 * 15 14 13 17 17 C 1.50700 * 109.49862 * 182.36196 * 15 14 13 18 18 C 1.38223 * 119.62140 * 35.00540 * 17 15 14 19 19 C 1.38627 * 119.16358 * 179.97438 * 18 17 15 20 20 C 1.38671 * 118.41823 * 359.97438 * 19 18 17 21 21 C 1.38179 * 119.16468 * 359.97438 * 20 19 18 22 22 N 1.31857 * 119.61758 * 214.72249 * 17 15 14 23 23 C 1.46854 * 111.00034 * 189.99924 * 11 10 9 24 24 H 0.97002 * 120.00116 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47225 * 59.99404 * 9 7 2 26 26 H 1.09005 * 109.47085 * 299.99945 * 9 7 2 27 27 H 1.09000 * 109.47288 * 60.00027 * 10 9 7 28 28 H 1.09005 * 109.46879 * 300.00057 * 10 9 7 29 29 H 1.09001 * 109.45906 * 305.85080 * 12 11 10 30 30 H 1.08994 * 109.46526 * 65.83386 * 12 11 10 31 31 H 1.08997 * 109.50468 * 180.87980 * 13 12 11 32 32 H 1.09004 * 109.50358 * 60.75551 * 13 12 11 33 33 H 1.08998 * 109.52745 * 297.74929 * 14 13 12 34 34 H 1.08999 * 109.52030 * 177.55385 * 14 13 12 35 35 H 1.08007 * 120.41770 * 359.97438 * 18 17 15 36 36 H 1.08000 * 120.79095 * 180.02562 * 19 18 17 37 37 H 1.08004 * 120.41624 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.61808 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.45788 * 54.14266 * 23 11 10 40 40 H 1.09001 * 109.46218 * 294.17869 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 7 1.5107 -4.9343 0.0012 12 6 0.7622 -5.1091 -1.2499 13 6 -0.1023 -6.3686 -1.1570 14 6 0.7974 -7.5817 -0.9049 15 6 1.6017 -7.3530 0.3779 16 1 0.9200 -7.2638 1.2237 17 6 2.5324 -8.5168 0.6023 18 6 3.1105 -9.1484 -0.4828 19 6 3.9656 -10.2176 -0.2654 20 6 4.2088 -10.6131 1.0413 21 6 3.5955 -9.9328 2.0759 22 7 2.7902 -8.9173 1.8319 23 6 2.4166 -6.0651 0.2404 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8712 -3.6040 0.8923 28 1 2.8726 -3.6047 -0.8877 29 1 0.1233 -4.2416 -1.4151 30 1 1.4610 -5.2090 -2.0804 31 1 -0.6459 -6.5066 -2.0916 32 1 -0.8107 -6.2639 -0.3352 33 1 1.4801 -7.7098 -1.7449 34 1 0.1822 -8.4747 -0.7947 35 1 2.8987 -8.8130 -1.4874 36 1 4.4320 -10.7299 -1.0939 37 1 4.8698 -11.4419 1.2477 38 1 3.7793 -10.2349 3.0964 39 1 2.9794 -5.8917 1.1577 40 1 3.1078 -6.1602 -0.5970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590600915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:08 Heat of formation + Delta-G solvation = 2.620799 kcal Electronic energy + Delta-G solvation = -19055.490901 eV Core-core repulsion = 16254.387060 eV Total energy + Delta-G solvation = -2801.103841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.41765 -39.73123 -36.15841 -34.65813 -33.48110 -32.89814 -31.35031 -30.02166 -26.91510 -25.36991 -24.58959 -24.07083 -22.99946 -21.60690 -20.57209 -18.61647 -17.80475 -17.15686 -16.67857 -16.56785 -16.22198 -15.95544 -15.54131 -15.15507 -14.77439 -14.51136 -14.35190 -14.13746 -13.94229 -13.77273 -13.35676 -13.09781 -12.84017 -12.60880 -12.44328 -12.27303 -12.00376 -11.75969 -11.57482 -11.43110 -11.19656 -11.14632 -10.76917 -10.53996 -10.29611 -9.86118 -9.18307 -8.20181 -6.31587 0.19642 0.41252 1.39731 1.40553 1.53809 2.39926 2.81018 3.00687 3.12965 3.40369 3.72832 3.89691 4.02899 4.09556 4.12265 4.21166 4.28485 4.29519 4.36489 4.46560 4.58192 4.61029 4.67066 4.76793 4.81560 4.93201 5.00110 5.00581 5.05540 5.12735 5.25840 5.28516 5.31642 5.43666 5.48632 5.66904 5.78504 5.83963 6.11356 6.29444 6.35172 6.85278 7.12475 7.37325 8.92171 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034781 B = 0.003764 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.852900 B = 7437.275464 C = 7868.310175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.038 3.962 10 C 0.080 3.920 11 N -0.551 5.551 12 C 0.052 3.948 13 C -0.109 4.109 14 C -0.103 4.103 15 C -0.030 4.030 16 H 0.075 0.925 17 C 0.121 3.879 18 C -0.175 4.175 19 C -0.075 4.075 20 C -0.175 4.175 21 C 0.083 3.917 22 N -0.519 5.519 23 C 0.077 3.923 24 H 0.264 0.736 25 H -0.001 1.001 26 H -0.010 1.010 27 H 0.057 0.943 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.057 0.943 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -23.255 -2.856 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.047 4.047 11 N -0.275 5.275 12 C -0.076 4.076 13 C -0.147 4.147 14 C -0.140 4.140 15 C -0.049 4.049 16 H 0.093 0.907 17 C -0.016 4.016 18 C -0.194 4.194 19 C -0.101 4.101 20 C -0.194 4.194 21 C -0.074 4.074 22 N -0.229 5.229 23 C -0.051 4.051 24 H 0.073 0.927 25 H 0.017 0.983 26 H 0.009 0.991 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.183 0.817 38 H 0.190 0.810 39 H 0.076 0.924 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.199 -22.700 -1.771 23.598 hybrid contribution 1.049 0.847 -0.978 1.665 sum 7.248 -21.854 -2.748 23.188 Atomic orbital electron populations 1.70116 1.07793 1.27730 1.51416 1.25967 0.95781 1.03320 0.94599 0.85367 0.78987 0.78621 0.77860 1.18660 1.20159 1.20334 1.21646 0.93469 0.92324 1.50926 0.92337 1.18913 0.94132 0.91758 0.95147 1.21950 0.95452 0.88529 0.98779 1.61875 1.27901 1.01796 1.35964 1.22150 0.96807 0.99116 0.89496 1.21565 0.97594 0.92746 1.02774 1.21662 0.98219 0.98232 0.95932 1.19985 0.95136 0.89846 0.99960 0.90708 1.21165 0.95822 0.95701 0.88920 1.22233 0.98799 0.97740 1.00647 1.22019 0.94891 0.94766 0.98437 1.22501 1.01497 1.02154 0.93282 1.23220 0.92075 0.90703 1.01381 1.67455 1.16239 1.14922 1.24247 1.21922 0.93486 0.89832 0.99891 0.92722 0.98313 0.99146 0.92479 0.96067 0.92469 0.94769 0.89110 0.92159 0.90226 0.90128 0.83283 0.81769 0.81707 0.81006 0.92449 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.55 -32.07 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.10 4.90 29.84 0.15 2.25 16 10 C 0.08 3.62 4.90 86.30 0.42 4.05 16 11 N -0.55 -21.29 4.66 -896.37 -4.17 -25.46 16 12 C 0.05 1.79 5.29 86.33 0.46 2.25 16 13 C -0.11 -2.87 6.09 30.65 0.19 -2.68 16 14 C -0.10 -2.28 4.77 30.68 0.15 -2.13 16 15 C -0.03 -0.81 2.67 -11.49 -0.03 -0.84 16 16 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 17 C 0.12 3.04 5.79 42.55 0.25 3.28 16 18 C -0.17 -3.32 9.18 22.36 0.21 -3.11 16 19 C -0.08 -1.09 10.18 22.47 0.23 -0.86 16 20 C -0.17 -2.48 10.11 22.36 0.23 -2.26 16 21 C 0.08 1.61 11.18 84.67 0.95 2.56 16 22 N -0.52 -13.88 10.27 -183.89 -1.89 -15.77 16 23 C 0.08 2.49 4.73 86.32 0.41 2.90 16 24 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.00 -0.08 6.43 -2.39 -0.02 -0.10 16 26 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 27 H 0.06 2.57 7.99 -2.39 -0.02 2.55 16 28 H 0.02 0.93 8.12 -2.38 -0.02 0.91 16 29 H 0.06 2.30 6.21 -2.39 -0.01 2.29 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.08 1.50 6.38 -2.39 -0.02 1.49 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.15 2.30 6.27 -2.91 -0.02 2.29 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 37 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.06 2.00 8.02 -2.39 -0.02 1.98 16 40 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -70.67 320.07 1.53 -69.14 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.00 Total: 8.38 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 4.29 Total: -25.89 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -5.78 Total: -98.77 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.67 1.53 -69.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590600915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.761 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds