Wall clock time and date at job start Mon Mar 30 2020 07:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51523 * 121.00557 * 2 1 4 4 C 1.53899 * 107.77193 * 134.49654 * 3 2 1 5 5 H 1.09002 * 111.97287 * 181.58013 * 4 3 2 6 6 C 1.54471 * 108.44763 * 305.73067 * 4 3 2 7 7 C 1.54212 * 105.06267 * 90.33548 * 6 4 3 8 8 C 1.54466 * 105.06846 * 0.02562 * 7 6 4 9 9 H 1.08995 * 112.52596 * 145.81227 * 8 7 6 10 10 C 1.51528 * 121.00149 * 180.02562 * 2 1 3 11 11 N 1.48615 * 107.39088 * 58.14647 * 4 3 2 12 12 C 1.46909 * 110.99842 * 165.10480 * 11 4 3 13 13 C 1.52999 * 109.46759 * 176.20310 * 12 11 4 14 14 H 1.08998 * 109.47143 * 302.48437 * 13 12 11 15 15 C 1.47201 * 109.47390 * 62.48590 * 13 12 11 16 16 N 5.69331 * 159.61619 * 229.62747 * 2 1 3 17 17 C 1.52999 * 109.47185 * 182.48577 * 13 12 11 18 18 C 1.50692 * 109.47551 * 175.00029 * 17 13 12 19 19 H 1.08002 * 120.00190 * 359.97438 * 18 17 13 20 20 C 1.37880 * 120.00401 * 180.02562 * 18 17 13 21 21 N 1.31515 * 120.00100 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99737 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47512 * 89.99866 * 22 20 18 24 24 H 1.48503 * 109.47047 * 210.00018 * 22 20 18 25 25 H 1.48506 * 109.47083 * 329.99512 * 22 20 18 26 26 H 1.08001 * 119.99455 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00073 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.79702 * 14.92988 * 3 2 1 29 29 H 1.09001 * 109.79786 * 254.06308 * 3 2 1 30 30 H 1.08998 * 110.31933 * 209.23249 * 6 4 3 31 31 H 1.09001 * 110.31905 * 331.43545 * 6 4 3 32 32 H 1.08998 * 110.32224 * 241.10855 * 7 6 4 33 33 H 1.08999 * 110.40651 * 118.94687 * 7 6 4 34 34 H 1.09002 * 109.79586 * 345.07344 * 10 2 1 35 35 H 1.08997 * 109.80151 * 105.87934 * 10 2 1 36 36 H 1.08993 * 109.46992 * 56.20684 * 12 11 4 37 37 H 1.09000 * 109.47047 * 296.19797 * 12 11 4 38 38 H 1.09002 * 109.47019 * 295.00527 * 17 13 12 39 39 H 1.09006 * 109.47013 * 54.99737 * 17 13 12 40 40 H 0.96998 * 119.99529 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0906 1.2987 0.0000 4 6 3.2129 1.1722 1.0454 5 1 3.8037 2.0851 1.1219 6 6 2.5793 0.7764 2.3974 7 6 2.5831 -0.7657 2.4055 8 6 3.2193 -1.1728 1.0581 9 1 3.8130 -2.0837 1.1350 10 6 2.0905 -1.2988 -0.0006 11 7 4.0434 -0.0003 0.6657 12 6 5.3243 0.0068 1.3852 13 6 6.1094 -1.2605 1.0412 14 1 5.5136 -2.1372 1.2952 15 6 6.4127 -1.2741 -0.3992 16 7 6.6468 -1.2845 -1.5108 17 6 7.4155 -1.2833 1.8376 18 6 8.1304 -2.5871 1.5930 19 1 7.6964 -3.3259 0.9356 20 6 9.3381 -2.8374 2.2093 21 7 9.9618 -3.9755 1.9962 22 14 10.0878 -1.5605 3.3482 23 1 9.6136 -1.7953 4.7357 24 1 11.5684 -1.6682 3.3062 25 1 9.6776 -0.2029 2.9079 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.4313 2.1256 0.2642 29 1 2.5221 1.4701 -0.9862 30 1 3.1781 1.1609 3.2230 31 1 1.5584 1.1529 2.4616 32 1 1.5641 -1.1464 2.4737 33 1 3.1827 -1.1399 3.2353 34 1 1.4312 -2.1258 0.2632 35 1 2.5212 -1.4704 -0.9870 36 1 5.1379 0.0386 2.4586 37 1 5.9017 0.8831 1.0904 38 1 8.0497 -0.4559 1.5193 39 1 7.1948 -1.1838 2.9004 40 1 10.8112 -4.1517 2.4301 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595842800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:27 Heat of formation + Delta-G solvation = 41.172338 kcal Electronic energy + Delta-G solvation = -19800.193943 eV Core-core repulsion = 17000.761822 eV Total energy + Delta-G solvation = -2799.432121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70389 -36.73637 -34.72143 -33.59512 -32.21472 -31.51311 -30.36093 -28.09101 -26.33594 -24.59185 -23.02700 -21.54826 -20.54744 -20.38293 -17.99172 -16.96888 -16.59427 -16.14316 -15.37355 -14.64935 -14.48474 -14.22237 -13.98537 -13.47297 -13.23504 -13.00421 -12.74501 -12.55557 -12.43849 -12.28750 -12.04027 -11.70844 -11.53176 -11.33731 -11.23339 -11.18582 -10.70404 -10.64500 -10.48653 -10.41368 -10.25761 -9.88694 -9.71790 -9.31816 -9.12843 -8.62274 -8.37675 -6.11212 -4.11826 2.21442 3.25021 3.34244 3.35149 3.70107 3.78545 3.93746 4.37757 4.52330 4.57833 4.80074 4.88234 4.93307 5.04709 5.05486 5.23714 5.27090 5.36151 5.37250 5.49959 5.58887 5.62289 5.76008 5.80332 5.82690 5.88909 5.90984 5.96534 6.03979 6.13194 6.18111 6.25419 6.32522 6.57684 6.79703 6.89738 6.93879 7.12597 7.16522 7.63322 8.40140 8.56140 8.92338 9.48734 11.01926 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.005131 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.163249 B = 5455.737940 C = 5717.548982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.097 4.097 3 C -0.074 4.074 4 C 0.066 3.934 5 H 0.092 0.908 6 C -0.146 4.146 7 C -0.146 4.146 8 C 0.059 3.941 9 H 0.104 0.896 10 C -0.075 4.075 11 N -0.506 5.506 12 C 0.049 3.951 13 C 0.019 3.981 14 H 0.104 0.896 15 C 0.253 3.747 16 N -0.470 5.470 17 C -0.005 4.005 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.148 10.335 2.551 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.097 4.097 3 C -0.112 4.112 4 C -0.042 4.042 5 H 0.110 0.890 6 C -0.185 4.185 7 C -0.185 4.185 8 C -0.049 4.049 9 H 0.122 0.878 10 C -0.113 4.113 11 N -0.228 5.228 12 C -0.080 4.080 13 C -0.003 4.003 14 H 0.122 0.878 15 C -0.065 4.065 16 N -0.146 5.146 17 C -0.044 4.044 18 C -0.565 4.565 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.704 3.296 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.188 1.188 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.475 10.214 0.326 20.243 hybrid contribution 0.289 0.489 1.982 2.061 sum -17.186 10.702 2.307 20.377 Atomic orbital electron populations 1.23496 0.94935 1.01439 1.05291 1.21993 0.94644 0.96049 0.97055 1.21018 0.95837 0.94450 0.99851 1.22974 0.93603 0.94817 0.92855 0.88964 1.22831 1.01384 0.96077 0.98171 1.22810 1.01598 0.95534 0.98526 1.23409 0.93531 0.95438 0.92560 0.87814 1.21266 0.95865 0.94264 0.99899 1.65237 1.02587 1.01811 1.53180 1.22352 0.90013 0.98534 0.97086 1.19020 0.99549 0.98152 0.83547 0.87823 1.28662 0.91377 0.92042 0.94381 1.80993 1.10554 1.09625 1.13465 1.19633 0.90778 0.99031 0.94922 1.21021 1.05370 1.00810 1.29343 0.90806 1.24984 0.96652 0.95169 0.96244 1.69906 1.16449 1.23535 1.43604 0.86827 0.78645 0.82716 0.81434 1.20067 1.21293 1.18849 0.88855 0.88736 0.91321 0.90127 0.91704 0.91232 0.91143 0.91281 0.91216 0.90046 0.92675 0.90114 0.95644 0.95019 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.99 14.00 29.01 0.41 -1.59 16 2 C -0.10 -1.01 4.17 -100.26 -0.42 -1.43 16 3 C -0.07 -0.75 5.62 -27.01 -0.15 -0.90 16 4 C 0.07 0.71 3.58 -65.52 -0.23 0.47 16 5 H 0.09 0.92 8.07 -51.93 -0.42 0.51 16 6 C -0.15 -1.41 5.47 -25.33 -0.14 -1.55 16 7 C -0.15 -1.51 5.51 -25.33 -0.14 -1.65 16 8 C 0.06 0.71 3.46 -64.80 -0.22 0.48 16 9 H 0.10 1.32 5.84 -51.93 -0.30 1.02 16 10 C -0.08 -0.85 5.69 -26.27 -0.15 -1.00 16 11 N -0.51 -6.54 4.59 -212.22 -0.97 -7.51 16 12 C 0.05 0.69 4.22 -3.82 -0.02 0.67 16 13 C 0.02 0.34 2.05 -93.41 -0.19 0.15 16 14 H 0.10 1.75 6.03 -51.93 -0.31 1.44 16 15 C 0.25 5.24 13.61 -20.76 -0.28 4.96 16 16 N -0.47 -10.73 18.54 42.15 0.78 -9.95 16 17 C 0.00 -0.10 3.49 -27.89 -0.10 -0.20 16 18 C -0.53 -14.17 9.15 -34.44 -0.32 -14.49 16 19 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 22 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 26 H 0.09 0.77 7.97 -52.49 -0.42 0.36 16 27 H 0.09 0.82 7.97 -52.49 -0.42 0.40 16 28 H 0.07 0.59 7.96 -51.93 -0.41 0.17 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.07 0.63 7.74 -51.93 -0.40 0.23 16 32 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.70 7.18 -51.93 -0.37 0.32 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.03 0.56 7.20 -51.93 -0.37 0.18 16 39 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 316.90 15.07 4.78 4.78 Total: -1.00 -30.63 316.90 -7.70 -38.33 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.33 Total: -1.17 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.05 Total: -14.15 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.58 Total: -43.71 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.63 -7.70 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.504 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds