Wall clock time and date at job start Mon Mar 30 2020 07:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51523 * 121.00557 * 2 1 4 4 C 1.53899 * 107.77193 * 134.49654 * 3 2 1 5 5 H 1.09002 * 111.97287 * 181.58013 * 4 3 2 6 6 C 1.54471 * 108.44763 * 305.73067 * 4 3 2 7 7 C 1.54212 * 105.06267 * 90.33548 * 6 4 3 8 8 C 1.54466 * 105.06846 * 0.02562 * 7 6 4 9 9 H 1.08995 * 112.52596 * 145.81227 * 8 7 6 10 10 C 1.51528 * 121.00149 * 180.02562 * 2 1 3 11 11 N 1.48615 * 107.39088 * 58.14647 * 4 3 2 12 12 C 1.46909 * 110.99842 * 165.10480 * 11 4 3 13 13 C 1.52999 * 109.46759 * 176.20310 * 12 11 4 14 14 H 1.08998 * 109.47143 * 302.48437 * 13 12 11 15 15 C 1.47201 * 109.47390 * 62.48590 * 13 12 11 16 16 N 5.69331 * 159.61619 * 229.62747 * 2 1 3 17 17 C 1.52999 * 109.47185 * 182.48577 * 13 12 11 18 18 C 1.50692 * 109.47551 * 175.00029 * 17 13 12 19 19 H 1.08002 * 120.00190 * 359.97438 * 18 17 13 20 20 C 1.37880 * 120.00401 * 180.02562 * 18 17 13 21 21 N 1.31515 * 120.00100 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99737 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47512 * 89.99866 * 22 20 18 24 24 H 1.48503 * 109.47047 * 210.00018 * 22 20 18 25 25 H 1.48506 * 109.47083 * 329.99512 * 22 20 18 26 26 H 1.08001 * 119.99455 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00073 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.79702 * 14.92988 * 3 2 1 29 29 H 1.09001 * 109.79786 * 254.06308 * 3 2 1 30 30 H 1.08998 * 110.31933 * 209.23249 * 6 4 3 31 31 H 1.09001 * 110.31905 * 331.43545 * 6 4 3 32 32 H 1.08998 * 110.32224 * 241.10855 * 7 6 4 33 33 H 1.08999 * 110.40651 * 118.94687 * 7 6 4 34 34 H 1.09002 * 109.79586 * 345.07344 * 10 2 1 35 35 H 1.08997 * 109.80151 * 105.87934 * 10 2 1 36 36 H 1.08993 * 109.46992 * 56.20684 * 12 11 4 37 37 H 1.09000 * 109.47047 * 296.19797 * 12 11 4 38 38 H 1.09002 * 109.47019 * 295.00527 * 17 13 12 39 39 H 1.09006 * 109.47013 * 54.99737 * 17 13 12 40 40 H 0.96998 * 119.99529 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0906 1.2987 0.0000 4 6 3.2129 1.1722 1.0454 5 1 3.8037 2.0851 1.1219 6 6 2.5793 0.7764 2.3974 7 6 2.5831 -0.7657 2.4055 8 6 3.2193 -1.1728 1.0581 9 1 3.8130 -2.0837 1.1350 10 6 2.0905 -1.2988 -0.0006 11 7 4.0434 -0.0003 0.6657 12 6 5.3243 0.0068 1.3852 13 6 6.1094 -1.2605 1.0412 14 1 5.5136 -2.1372 1.2952 15 6 6.4127 -1.2741 -0.3992 16 7 6.6468 -1.2845 -1.5108 17 6 7.4155 -1.2833 1.8376 18 6 8.1304 -2.5871 1.5930 19 1 7.6964 -3.3259 0.9356 20 6 9.3381 -2.8374 2.2093 21 7 9.9618 -3.9755 1.9962 22 14 10.0878 -1.5605 3.3482 23 1 9.6136 -1.7953 4.7357 24 1 11.5684 -1.6682 3.3062 25 1 9.6776 -0.2029 2.9079 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.4313 2.1256 0.2642 29 1 2.5221 1.4701 -0.9862 30 1 3.1781 1.1609 3.2230 31 1 1.5584 1.1529 2.4616 32 1 1.5641 -1.1464 2.4737 33 1 3.1827 -1.1399 3.2353 34 1 1.4312 -2.1258 0.2632 35 1 2.5212 -1.4704 -0.9870 36 1 5.1379 0.0386 2.4586 37 1 5.9017 0.8831 1.0904 38 1 8.0497 -0.4559 1.5193 39 1 7.1948 -1.1838 2.9004 40 1 10.8112 -4.1517 2.4301 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595842800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:26 Heat of formation + Delta-G solvation = 22.771952 kcal Electronic energy + Delta-G solvation = -19800.991844 eV Core-core repulsion = 17000.761822 eV Total energy + Delta-G solvation = -2800.230022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58984 -38.24704 -35.97555 -35.19537 -33.85601 -32.35336 -31.56290 -29.19517 -27.73358 -25.41459 -24.28140 -23.30925 -21.38669 -21.29988 -19.00353 -18.80487 -18.03192 -17.21146 -16.29809 -16.16924 -15.55494 -15.33256 -15.10742 -14.87396 -14.57382 -14.24370 -14.11222 -13.77199 -13.58507 -13.47070 -13.34950 -13.13122 -12.84624 -12.61436 -12.47843 -12.28659 -12.14970 -11.88708 -11.64692 -11.58347 -11.44725 -11.21877 -11.19656 -11.01970 -10.72882 -9.91783 -9.28934 -8.24719 -6.30496 1.42202 1.45640 1.46088 1.55830 2.04360 2.12553 2.41130 2.96909 3.11974 3.32437 3.69829 3.75801 3.99271 4.10056 4.19252 4.25029 4.28482 4.34198 4.48621 4.54850 4.64664 4.67948 4.76830 4.87194 4.95765 4.99393 5.00580 5.09686 5.13397 5.18937 5.21417 5.23506 5.31178 5.41778 5.44122 5.63354 5.82264 5.99688 6.03054 6.21548 6.29155 6.76713 6.90199 7.34074 8.92319 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.005131 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.163249 B = 5455.737940 C = 5717.548982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.072 4.072 4 C 0.065 3.935 5 H 0.101 0.899 6 C -0.138 4.138 7 C -0.140 4.140 8 C 0.054 3.946 9 H 0.088 0.912 10 C -0.074 4.074 11 N -0.525 5.525 12 C 0.060 3.940 13 C 0.024 3.976 14 H 0.110 0.890 15 C 0.263 3.737 16 N -0.514 5.514 17 C -0.001 4.001 18 C -0.531 4.531 19 H 0.027 0.973 20 C 0.004 3.996 21 N -0.954 5.954 22 Si 0.948 3.052 23 H -0.256 1.256 24 H -0.295 1.295 25 H -0.238 1.238 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.818 12.984 4.646 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.114 4.114 3 C -0.109 4.109 4 C -0.043 4.043 5 H 0.119 0.881 6 C -0.177 4.177 7 C -0.179 4.179 8 C -0.055 4.055 9 H 0.106 0.894 10 C -0.112 4.112 11 N -0.247 5.247 12 C -0.069 4.069 13 C 0.003 3.997 14 H 0.128 0.872 15 C -0.053 4.053 16 N -0.192 5.192 17 C -0.040 4.040 18 C -0.569 4.569 19 H 0.046 0.954 20 C -0.192 4.192 21 N -0.595 5.595 22 Si 0.771 3.229 23 H -0.181 1.181 24 H -0.222 1.222 25 H -0.161 1.161 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.182 12.879 2.418 23.231 hybrid contribution 0.722 -0.443 1.226 1.490 sum -18.460 12.436 3.644 22.554 Atomic orbital electron populations 1.23673 0.94525 1.02396 1.03149 1.21957 0.95036 0.95562 0.98887 1.21009 0.95959 0.94985 0.98940 1.23071 0.93497 0.94119 0.93615 0.88062 1.22783 1.02068 0.95232 0.97599 1.22761 1.01734 0.96253 0.97182 1.23411 0.93530 0.94605 0.93910 0.89413 1.21217 0.95989 0.95527 0.98454 1.65216 1.02699 1.03142 1.53667 1.22210 0.90203 0.96035 0.98441 1.19122 0.98695 1.00928 0.80998 0.87197 1.29366 0.90204 0.90651 0.95084 1.80983 1.11887 1.11309 1.14975 1.19573 0.91713 0.95659 0.97101 1.21378 1.05632 1.02195 1.27729 0.95431 1.26031 0.97338 0.97466 0.98400 1.70091 1.17232 1.26367 1.45773 0.85689 0.76952 0.80615 0.79633 1.18063 1.22163 1.16070 0.87433 0.88235 0.89296 0.91761 0.90857 0.90199 0.90532 0.91238 0.90280 0.92509 0.90384 0.89725 0.95451 0.92043 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.18 14.00 67.78 0.95 -2.23 16 2 C -0.11 -2.15 4.17 -15.96 -0.07 -2.22 16 3 C -0.07 -1.29 5.62 30.41 0.17 -1.12 16 4 C 0.07 1.21 3.58 45.39 0.16 1.37 16 5 H 0.10 1.70 8.07 -2.39 -0.02 1.68 16 6 C -0.14 -2.17 5.47 31.50 0.17 -2.00 16 7 C -0.14 -2.53 5.51 31.50 0.17 -2.35 16 8 C 0.05 1.22 3.46 45.87 0.16 1.38 16 9 H 0.09 2.22 5.84 -2.39 -0.01 2.21 16 10 C -0.07 -1.62 5.69 30.89 0.18 -1.45 16 11 N -0.52 -12.69 4.59 -825.32 -3.79 -16.47 16 12 C 0.06 1.54 4.22 86.30 0.36 1.90 16 13 C 0.02 0.84 2.05 -12.60 -0.03 0.81 16 14 H 0.11 3.69 6.03 -2.39 -0.01 3.67 16 15 C 0.26 11.05 13.61 89.44 1.22 12.26 16 16 N -0.51 -24.06 18.54 20.01 0.37 -23.69 16 17 C 0.00 -0.06 3.49 29.85 0.10 0.05 16 18 C -0.53 -28.90 9.15 25.60 0.23 -28.67 16 19 H 0.03 1.70 7.84 -2.91 -0.02 1.68 16 20 C 0.00 0.25 5.47 84.66 0.46 0.71 16 21 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 22 Si 0.95 41.48 27.47 68.60 1.88 43.37 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 26 H 0.11 1.41 7.97 -2.91 -0.02 1.39 16 27 H 0.10 1.47 7.97 -2.91 -0.02 1.45 16 28 H 0.09 1.23 7.96 -2.39 -0.02 1.21 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.08 1.12 7.74 -2.39 -0.02 1.10 16 32 H 0.08 1.28 7.76 -2.39 -0.02 1.27 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.51 7.96 -2.39 -0.02 1.49 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.66 7.18 -2.39 -0.02 1.64 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 39 H 0.06 2.20 7.57 -2.38 -0.02 2.18 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -68.30 316.90 3.97 -64.32 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.95 Total: 12.98 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 4.25 Total: -21.56 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -3.12 Total: -99.11 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.37 kcal Total: -68.30 3.97 -64.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.096 kcal (2) G-P(sol) polarization free energy of solvation -68.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds