Wall clock time and date at job start Mon Mar 30 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51531 * 121.00372 * 2 1 4 4 C 1.53907 * 107.76089 * 134.46660 * 3 2 1 5 5 H 1.09005 * 111.96560 * 181.58196 * 4 3 2 6 6 C 1.54449 * 108.45234 * 305.73636 * 4 3 2 7 7 C 1.54219 * 105.06608 * 90.34742 * 6 4 3 8 8 C 1.54460 * 105.06299 * 359.97438 * 7 6 4 9 9 H 1.08995 * 112.05683 * 145.56592 * 8 7 6 10 10 C 1.53346 * 120.45069 * 178.86483 * 2 1 3 11 11 N 1.48612 * 107.39229 * 58.16032 * 4 3 2 12 12 C 1.46897 * 110.99997 * 165.09461 * 11 4 3 13 13 C 1.53006 * 109.46934 * 299.14848 * 12 11 4 14 14 H 1.08994 * 109.46980 * 57.52030 * 13 12 11 15 15 C 1.47198 * 109.47191 * 297.51355 * 13 12 11 16 16 N 5.68848 * 159.57774 * 309.90007 * 2 1 3 17 17 C 1.53003 * 109.46996 * 177.51548 * 13 12 11 18 18 C 1.50699 * 109.47085 * 184.99969 * 17 13 12 19 19 H 1.07997 * 120.00209 * 0.02562 * 18 17 13 20 20 C 1.37879 * 119.99864 * 179.97438 * 18 17 13 21 21 N 1.31517 * 119.99909 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99882 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47114 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47077 * 120.00638 * 22 20 18 25 25 H 1.48503 * 109.47401 * 240.00446 * 22 20 18 26 26 H 1.08001 * 119.99784 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99842 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.79961 * 14.90337 * 3 2 1 29 29 H 1.09005 * 109.80283 * 254.03134 * 3 2 1 30 30 H 1.09000 * 110.32475 * 331.45561 * 6 4 3 31 31 H 1.08994 * 110.32737 * 209.24665 * 6 4 3 32 32 H 1.09000 * 110.32567 * 241.09543 * 7 6 4 33 33 H 1.09006 * 110.31861 * 118.89082 * 7 6 4 34 34 H 1.08998 * 108.69098 * 106.07523 * 10 2 1 35 35 H 1.08997 * 111.17487 * 345.05623 * 10 2 1 36 36 H 1.08996 * 109.47215 * 59.14694 * 12 11 4 37 37 H 1.09004 * 109.47574 * 179.14988 * 12 11 4 38 38 H 1.09007 * 109.47293 * 305.00421 * 17 13 12 39 39 H 1.09000 * 109.47164 * 64.99936 * 17 13 12 40 40 H 0.97005 * 119.99982 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0905 1.2988 0.0000 4 6 3.2124 1.1724 1.0460 5 1 3.8031 2.0852 1.1227 6 6 2.5782 0.7767 2.3976 7 6 2.5823 -0.7654 2.4061 8 6 3.2180 -1.1726 1.0586 9 1 3.8134 -2.0815 1.1449 10 6 2.0871 -1.3217 0.0262 11 7 4.0432 0.0000 0.6669 12 6 5.3237 0.0072 1.3867 13 6 6.1026 1.2747 1.0290 14 1 5.5023 2.1511 1.2733 15 6 6.4065 1.2738 -0.4112 16 7 6.6409 1.2732 -1.5228 17 6 7.4083 1.3127 1.8257 18 6 8.1168 2.6174 1.5670 19 1 7.6793 3.3467 0.9013 20 6 9.3229 2.8804 2.1810 21 7 9.8554 1.9925 2.9920 22 14 10.2015 4.4973 1.8597 23 1 9.3999 5.3172 0.9161 24 1 10.3659 5.2340 3.1385 25 1 11.5369 4.2263 1.2694 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.4312 2.1258 0.2638 29 1 2.5226 1.4700 -0.9860 30 1 1.5572 1.1529 2.4613 31 1 3.1764 1.1614 3.2235 32 1 1.5633 -1.1464 2.4741 33 1 3.1827 -1.1378 3.2362 34 1 2.5106 -1.4975 -0.9626 35 1 1.4401 -2.1534 0.3048 36 1 5.1370 -0.0136 2.4604 37 1 5.9056 -0.8693 1.1020 38 1 7.1876 1.2238 2.8895 39 1 8.0467 0.4851 1.5167 40 1 10.7042 2.1774 3.4237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595842804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:29 Heat of formation + Delta-G solvation = 37.179799 kcal Electronic energy + Delta-G solvation = -19753.092716 eV Core-core repulsion = 16953.487465 eV Total energy + Delta-G solvation = -2799.605250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63945 -36.61866 -34.62831 -33.56202 -32.17616 -31.53075 -30.11812 -27.91903 -26.01527 -24.51908 -23.01917 -21.83154 -20.49448 -20.32546 -17.96048 -16.67175 -16.52197 -15.88065 -15.30942 -14.69034 -14.47554 -14.32460 -13.90067 -13.46732 -13.10014 -12.80986 -12.71397 -12.49391 -12.38761 -12.08571 -11.80067 -11.63660 -11.46075 -11.22635 -11.11764 -11.05985 -10.64089 -10.62442 -10.49691 -10.41739 -10.35623 -10.00570 -9.52567 -9.21029 -9.09406 -8.46449 -8.30467 -6.10153 -4.13193 2.25790 3.28020 3.36417 3.40990 3.74767 3.84180 3.99174 4.40635 4.55154 4.62058 4.89056 4.95753 4.97607 5.07001 5.12272 5.28190 5.32889 5.41724 5.46488 5.57067 5.66233 5.69258 5.79999 5.85042 5.87677 5.94522 5.97401 6.02654 6.11233 6.18775 6.24143 6.40358 6.51873 6.60170 6.83545 6.99671 7.24501 7.42377 7.52711 7.85299 8.22804 8.60402 8.91797 9.52415 11.00791 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033032 B = 0.004802 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.463092 B = 5829.171768 C = 5975.412341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.097 4.097 3 C -0.074 4.074 4 C 0.060 3.940 5 H 0.102 0.898 6 C -0.146 4.146 7 C -0.146 4.146 8 C 0.066 3.934 9 H 0.093 0.907 10 C -0.074 4.074 11 N -0.506 5.506 12 C 0.053 3.947 13 C 0.009 3.991 14 H 0.099 0.901 15 C 0.256 3.744 16 N -0.478 5.478 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.678 -5.573 0.404 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.097 4.097 3 C -0.112 4.112 4 C -0.049 4.049 5 H 0.120 0.880 6 C -0.185 4.185 7 C -0.185 4.185 8 C -0.043 4.043 9 H 0.111 0.889 10 C -0.111 4.111 11 N -0.229 5.229 12 C -0.076 4.076 13 C -0.013 4.013 14 H 0.116 0.884 15 C -0.061 4.061 16 N -0.155 5.155 17 C -0.007 4.007 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.017 -5.611 -1.749 18.003 hybrid contribution 0.344 0.889 1.257 1.578 sum -16.673 -4.722 -0.492 17.336 Atomic orbital electron populations 1.23492 0.94972 1.01385 1.05522 1.22388 0.94621 0.95886 0.96794 1.21014 0.95924 0.94211 1.00014 1.23112 0.93553 0.95575 0.92651 0.88030 1.22828 1.01478 0.95639 0.98569 1.22846 1.01312 0.96045 0.98312 1.22953 0.93610 0.94902 0.92826 0.88940 1.21339 0.95858 0.94095 0.99857 1.65197 1.02684 1.01638 1.53344 1.22318 0.89643 0.98648 0.97013 1.19283 1.00687 0.97787 0.83519 0.88355 1.28826 0.91045 0.91796 0.94471 1.80975 1.11094 1.09903 1.13549 1.19171 0.88388 0.98269 0.94871 1.21176 1.05481 1.02087 1.27594 0.92480 1.24948 0.97196 0.96875 0.94912 1.69951 1.18757 1.34545 1.29772 0.86547 0.79747 0.83781 0.78086 1.19662 1.20868 1.20949 0.88820 0.88863 0.91151 0.90115 0.91246 0.91273 0.91301 0.91656 0.90391 0.91055 0.92653 0.90128 0.94497 0.95553 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.08 14.00 29.01 0.41 -1.67 16 2 C -0.10 -1.04 4.26 -99.33 -0.42 -1.46 16 3 C -0.07 -0.85 5.64 -27.00 -0.15 -1.01 16 4 C 0.06 0.74 3.38 -65.53 -0.22 0.52 16 5 H 0.10 1.33 5.83 -51.93 -0.30 1.03 16 6 C -0.15 -1.59 5.51 -25.33 -0.14 -1.73 16 7 C -0.15 -1.50 5.47 -25.33 -0.14 -1.64 16 8 C 0.07 0.74 3.58 -65.54 -0.23 0.51 16 9 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 10 C -0.07 -0.78 5.65 -26.11 -0.15 -0.93 16 11 N -0.51 -6.85 4.62 -213.09 -0.98 -7.84 16 12 C 0.05 0.79 4.22 -3.82 -0.02 0.77 16 13 C 0.01 0.17 2.06 -93.40 -0.19 -0.03 16 14 H 0.10 1.70 6.03 -51.93 -0.31 1.39 16 15 C 0.26 5.38 13.61 -20.76 -0.28 5.09 16 16 N -0.48 -10.94 18.54 42.15 0.78 -10.16 16 17 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 18 C -0.53 -13.96 8.60 -34.44 -0.30 -14.25 16 19 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H 0.09 0.83 7.97 -52.49 -0.42 0.42 16 27 H 0.09 0.80 8.00 -52.49 -0.42 0.38 16 28 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.71 7.74 -51.93 -0.40 0.30 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 33 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.63 8.03 -51.93 -0.42 0.22 16 36 H 0.06 0.77 7.18 -51.93 -0.37 0.40 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -29.50 320.57 -8.09 -37.59 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.37 Total: -2.36 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.06 Total: -13.59 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.53 Total: -42.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.50 -8.09 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.769 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds