Wall clock time and date at job start Mon Mar 30 2020 07:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51531 * 121.00372 * 2 1 4 4 C 1.53907 * 107.76089 * 134.46660 * 3 2 1 5 5 H 1.09005 * 111.96560 * 181.58196 * 4 3 2 6 6 C 1.54449 * 108.45234 * 305.73636 * 4 3 2 7 7 C 1.54219 * 105.06608 * 90.34742 * 6 4 3 8 8 C 1.54460 * 105.06299 * 359.97438 * 7 6 4 9 9 H 1.08995 * 112.05683 * 145.56592 * 8 7 6 10 10 C 1.53346 * 120.45069 * 178.86483 * 2 1 3 11 11 N 1.48612 * 107.39229 * 58.16032 * 4 3 2 12 12 C 1.46897 * 110.99997 * 165.09461 * 11 4 3 13 13 C 1.53006 * 109.46934 * 299.14848 * 12 11 4 14 14 H 1.08994 * 109.46980 * 57.52030 * 13 12 11 15 15 C 1.47198 * 109.47191 * 297.51355 * 13 12 11 16 16 N 5.68848 * 159.57774 * 309.90007 * 2 1 3 17 17 C 1.53003 * 109.46996 * 177.51548 * 13 12 11 18 18 C 1.50699 * 109.47085 * 184.99969 * 17 13 12 19 19 H 1.07997 * 120.00209 * 0.02562 * 18 17 13 20 20 C 1.37879 * 119.99864 * 179.97438 * 18 17 13 21 21 N 1.31517 * 119.99909 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99882 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47114 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47077 * 120.00638 * 22 20 18 25 25 H 1.48503 * 109.47401 * 240.00446 * 22 20 18 26 26 H 1.08001 * 119.99784 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99842 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.79961 * 14.90337 * 3 2 1 29 29 H 1.09005 * 109.80283 * 254.03134 * 3 2 1 30 30 H 1.09000 * 110.32475 * 331.45561 * 6 4 3 31 31 H 1.08994 * 110.32737 * 209.24665 * 6 4 3 32 32 H 1.09000 * 110.32567 * 241.09543 * 7 6 4 33 33 H 1.09006 * 110.31861 * 118.89082 * 7 6 4 34 34 H 1.08998 * 108.69098 * 106.07523 * 10 2 1 35 35 H 1.08997 * 111.17487 * 345.05623 * 10 2 1 36 36 H 1.08996 * 109.47215 * 59.14694 * 12 11 4 37 37 H 1.09004 * 109.47574 * 179.14988 * 12 11 4 38 38 H 1.09007 * 109.47293 * 305.00421 * 17 13 12 39 39 H 1.09000 * 109.47164 * 64.99936 * 17 13 12 40 40 H 0.97005 * 119.99982 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0905 1.2988 0.0000 4 6 3.2124 1.1724 1.0460 5 1 3.8031 2.0852 1.1227 6 6 2.5782 0.7767 2.3976 7 6 2.5823 -0.7654 2.4061 8 6 3.2180 -1.1726 1.0586 9 1 3.8134 -2.0815 1.1449 10 6 2.0871 -1.3217 0.0262 11 7 4.0432 0.0000 0.6669 12 6 5.3237 0.0072 1.3867 13 6 6.1026 1.2747 1.0290 14 1 5.5023 2.1511 1.2733 15 6 6.4065 1.2738 -0.4112 16 7 6.6409 1.2732 -1.5228 17 6 7.4083 1.3127 1.8257 18 6 8.1168 2.6174 1.5670 19 1 7.6793 3.3467 0.9013 20 6 9.3229 2.8804 2.1810 21 7 9.8554 1.9925 2.9920 22 14 10.2015 4.4973 1.8597 23 1 9.3999 5.3172 0.9161 24 1 10.3659 5.2340 3.1385 25 1 11.5369 4.2263 1.2694 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.4312 2.1258 0.2638 29 1 2.5226 1.4700 -0.9860 30 1 1.5572 1.1529 2.4613 31 1 3.1764 1.1614 3.2235 32 1 1.5633 -1.1464 2.4741 33 1 3.1827 -1.1378 3.2362 34 1 2.5106 -1.4975 -0.9626 35 1 1.4401 -2.1534 0.3048 36 1 5.1370 -0.0136 2.4604 37 1 5.9056 -0.8693 1.1020 38 1 7.1876 1.2238 2.8895 39 1 8.0467 0.4851 1.5167 40 1 10.7042 2.1774 3.4237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595842804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:28 Heat of formation + Delta-G solvation = 21.055291 kcal Electronic energy + Delta-G solvation = -19753.791927 eV Core-core repulsion = 16953.487465 eV Total energy + Delta-G solvation = -2800.304462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58669 -38.19513 -35.93325 -35.21009 -33.73378 -32.42235 -31.37069 -29.01609 -27.57152 -25.38499 -24.46453 -23.53592 -21.38191 -21.29857 -18.93856 -18.47639 -18.00011 -17.12579 -16.50353 -16.21346 -15.50877 -15.40703 -14.93174 -14.86016 -14.39199 -14.35676 -13.90582 -13.69954 -13.60885 -13.36139 -13.32985 -13.05542 -12.83827 -12.66148 -12.52920 -12.37944 -12.25807 -12.11544 -11.71844 -11.47476 -11.41360 -11.21113 -11.11350 -10.99443 -10.55867 -9.91500 -9.30338 -8.20102 -6.28381 1.38576 1.41823 1.48460 1.52160 2.05402 2.13194 2.41068 2.96697 3.15542 3.34903 3.68803 3.74982 4.01783 4.10139 4.20023 4.24508 4.29801 4.35461 4.50140 4.56410 4.65552 4.73343 4.78102 4.89799 4.99107 5.00513 5.02185 5.09970 5.12262 5.20264 5.22452 5.30262 5.40866 5.45645 5.60336 5.78381 5.82496 5.99816 6.02445 6.16654 6.26795 6.82319 6.92432 7.40371 8.91063 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033032 B = 0.004802 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.463092 B = 5829.171768 C = 5975.412341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.071 4.071 4 C 0.054 3.946 5 H 0.090 0.910 6 C -0.141 4.141 7 C -0.139 4.139 8 C 0.063 3.937 9 H 0.096 0.904 10 C -0.070 4.070 11 N -0.522 5.522 12 C 0.065 3.935 13 C 0.020 3.980 14 H 0.114 0.886 15 C 0.266 3.734 16 N -0.512 5.512 17 C 0.039 3.961 18 C -0.538 4.538 19 H 0.053 0.947 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.948 3.052 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.285 1.285 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.001 0.999 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.481 -5.524 0.961 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.116 4.116 3 C -0.109 4.109 4 C -0.054 4.054 5 H 0.108 0.892 6 C -0.180 4.180 7 C -0.178 4.178 8 C -0.045 4.045 9 H 0.114 0.886 10 C -0.108 4.108 11 N -0.244 5.244 12 C -0.065 4.065 13 C -0.001 4.001 14 H 0.132 0.868 15 C -0.050 4.050 16 N -0.190 5.190 17 C 0.000 4.000 18 C -0.576 4.576 19 H 0.071 0.929 20 C -0.186 4.186 21 N -0.563 5.563 22 Si 0.774 3.226 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.211 1.211 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.837 -5.560 -1.194 19.677 hybrid contribution 0.854 0.865 1.056 1.610 sum -17.983 -4.695 -0.138 18.586 Atomic orbital electron populations 1.23675 0.94500 1.02412 1.03162 1.22344 0.95052 0.95376 0.98826 1.20965 0.95903 0.95462 0.98556 1.23151 0.93632 0.94639 0.93994 0.89241 1.22777 1.01800 0.96108 0.97282 1.22795 1.01984 0.95475 0.97555 1.23052 0.93625 0.94074 0.93783 0.88573 1.21327 0.95804 0.94838 0.98782 1.65185 1.02552 1.03168 1.53531 1.22113 0.90227 0.96254 0.97870 1.19233 0.99112 1.00530 0.81255 0.86836 1.29308 0.90115 0.90683 0.94930 1.80967 1.12044 1.11273 1.14703 1.18982 0.89855 0.95833 0.95288 1.21559 1.05839 1.03220 1.27022 0.92905 1.25694 0.98121 0.99861 0.94919 1.70040 1.19274 1.36196 1.30781 0.85650 0.78354 0.80331 0.78290 1.19410 1.19717 1.21106 0.88081 0.87535 0.89807 0.92269 0.90222 0.91603 0.90008 0.91435 0.91955 0.88999 0.91309 0.90641 0.94703 0.98081 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.23 14.00 67.78 0.95 -2.28 16 2 C -0.12 -2.24 4.26 -15.36 -0.07 -2.30 16 3 C -0.07 -1.55 5.64 30.42 0.17 -1.38 16 4 C 0.05 1.27 3.38 45.38 0.15 1.43 16 5 H 0.09 2.27 5.83 -2.38 -0.01 2.26 16 6 C -0.14 -2.75 5.51 31.50 0.17 -2.57 16 7 C -0.14 -2.51 5.47 31.50 0.17 -2.33 16 8 C 0.06 1.31 3.58 45.36 0.16 1.47 16 9 H 0.10 1.91 8.07 -2.39 -0.02 1.89 16 10 C -0.07 -1.34 5.65 31.00 0.18 -1.16 16 11 N -0.52 -13.63 4.62 -828.08 -3.82 -17.45 16 12 C 0.06 1.89 4.22 86.31 0.36 2.26 16 13 C 0.02 0.75 2.06 -12.60 -0.03 0.72 16 14 H 0.11 3.87 6.03 -2.39 -0.01 3.85 16 15 C 0.27 11.25 13.61 89.44 1.22 12.46 16 16 N -0.51 -23.66 18.54 20.00 0.37 -23.29 16 17 C 0.04 1.83 4.42 29.85 0.13 1.96 16 18 C -0.54 -28.70 8.60 25.60 0.22 -28.48 16 19 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 20 C 0.01 0.72 5.46 84.65 0.46 1.18 16 21 N -0.92 -53.04 13.29 21.45 0.28 -52.76 16 22 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H 0.10 1.48 7.97 -2.91 -0.02 1.46 16 27 H 0.11 1.44 8.00 -2.91 -0.02 1.42 16 28 H 0.08 1.55 7.96 -2.39 -0.02 1.53 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.40 7.74 -2.39 -0.02 1.38 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.29 7.73 -2.39 -0.02 1.27 16 33 H 0.07 1.20 8.13 -2.38 -0.02 1.18 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.36 8.03 -2.39 -0.02 1.34 16 36 H 0.07 1.83 7.18 -2.39 -0.02 1.81 16 37 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -62.34 320.57 4.13 -58.21 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.01 Total: 8.76 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.26 Total: -19.04 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -3.17 Total: -93.50 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -62.34 4.13 -58.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.269 kcal (2) G-P(sol) polarization free energy of solvation -62.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds