Wall clock time and date at job start Mon Mar 30 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00201 * 2 1 4 4 H 1.48496 * 109.47228 * 269.99954 * 3 2 1 5 5 H 1.48507 * 109.46951 * 30.00460 * 3 2 1 6 6 H 1.48501 * 109.46898 * 149.99754 * 3 2 1 7 7 C 1.37876 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47475 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47414 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00120 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.46682 * 325.00117 * 12 11 10 14 14 C 1.50701 * 109.47314 * 205.00266 * 12 11 10 15 15 C 1.38225 * 119.61324 * 4.72258 * 14 12 11 16 16 C 1.38628 * 119.15729 * 179.75864 * 15 14 12 17 17 C 1.38674 * 118.42248 * 0.50992 * 16 15 14 18 18 C 1.38182 * 119.16036 * 359.73282 * 17 16 15 19 19 N 1.31856 * 119.61976 * 184.99838 * 14 12 11 20 20 C 1.52994 * 109.47402 * 84.99513 * 12 11 10 21 21 C 1.53782 * 113.61734 * 184.99959 * 20 12 11 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 12 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 0.96998 * 119.99855 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47115 * 59.99787 * 9 7 2 26 26 H 1.08999 * 109.47119 * 299.99828 * 9 7 2 27 27 H 1.09003 * 109.46961 * 59.99294 * 10 9 7 28 28 H 1.09007 * 109.46790 * 300.00116 * 10 9 7 29 29 H 1.00896 * 110.99847 * 303.94951 * 11 10 9 30 30 H 1.08005 * 120.42686 * 359.97438 * 15 14 12 31 31 H 1.08004 * 120.79429 * 180.21752 * 16 15 14 32 32 H 1.08000 * 120.42216 * 179.71377 * 17 16 15 33 33 H 1.07999 * 119.61941 * 180.02562 * 18 17 16 34 34 H 1.09002 * 112.84929 * 316.20035 * 20 12 11 35 35 H 1.09001 * 113.61250 * 105.47049 * 21 20 12 36 36 H 1.08997 * 113.61225 * 334.56890 * 21 20 12 37 37 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 38 38 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 39 39 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 40 40 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 7 1.5106 -4.9343 -0.0020 12 6 2.4350 -6.0760 -0.0024 13 1 3.3179 -5.8283 -0.5917 14 6 1.7505 -7.2765 -0.6034 15 6 0.4810 -7.1444 -1.1340 16 6 -0.1379 -8.2538 -1.6890 17 6 0.5420 -9.4624 -1.6799 18 6 1.8070 -9.5191 -1.1269 19 7 2.3672 -8.4419 -0.6121 20 6 2.8537 -6.3938 1.4345 21 6 3.9185 -7.4987 1.5358 22 6 3.1469 -8.0210 2.7592 23 6 1.8962 -7.3580 2.1582 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 0.8739 -4.9845 0.7791 30 1 -0.0211 -6.1882 -1.1195 31 1 -1.1280 -8.1797 -2.1141 32 1 0.0884 -10.3482 -2.0994 33 1 2.3434 -10.4565 -1.1163 34 1 3.0941 -5.5014 2.0125 35 1 4.9142 -7.1250 1.7745 36 1 3.9149 -8.1872 0.6909 37 1 3.0853 -9.1084 2.8051 38 1 3.4677 -7.5752 3.7008 39 1 1.3389 -8.0080 1.4837 40 1 1.2618 -6.8709 2.8987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599568682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:13 Heat of formation + Delta-G solvation = 53.078247 kcal Electronic energy + Delta-G solvation = -19315.794518 eV Core-core repulsion = 16516.878676 eV Total energy + Delta-G solvation = -2798.915842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65931 -38.42113 -35.65306 -33.12645 -32.37520 -31.41189 -29.23458 -26.75320 -25.45412 -24.25223 -23.47175 -23.06975 -21.02541 -20.57102 -19.14905 -16.78204 -16.34225 -16.09816 -15.74326 -15.26866 -15.09639 -14.50048 -14.02729 -13.95886 -13.55816 -13.14164 -13.07950 -12.38924 -12.32058 -12.09468 -12.00797 -11.54413 -11.29368 -11.14591 -10.92493 -10.60933 -10.54972 -10.37936 -10.04805 -9.92884 -9.71688 -9.41326 -9.15578 -9.15010 -8.78689 -8.35533 -7.81645 -6.00346 -4.02700 1.23892 1.39659 3.32274 3.38445 3.41588 3.90494 4.11897 4.46267 4.70811 4.77569 4.89572 4.94889 4.98616 5.01737 5.10817 5.23088 5.35986 5.42423 5.57036 5.61437 5.79844 5.85568 5.92488 5.97466 6.01851 6.10546 6.20529 6.24592 6.31157 6.33037 6.46688 6.49599 6.68470 6.95775 6.96711 7.43600 7.71301 7.78552 7.91570 8.06326 8.11293 8.42776 9.04472 9.61243 11.11096 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.004458 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.515610 B = 6279.109967 C = 6985.505817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.068 3.932 11 N -0.685 5.685 12 C 0.142 3.858 13 H 0.093 0.907 14 C 0.150 3.850 15 C -0.145 4.145 16 C -0.082 4.082 17 C -0.186 4.186 18 C 0.090 3.910 19 N -0.481 5.481 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.133 4.133 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.340 0.660 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -19.331 0.425 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.060 4.060 11 N -0.315 5.315 12 C 0.031 3.969 13 H 0.111 0.889 14 C 0.012 3.988 15 C -0.165 4.165 16 C -0.108 4.108 17 C -0.206 4.206 18 C -0.068 4.068 19 N -0.191 5.191 20 C -0.153 4.153 21 C -0.178 4.178 22 C -0.176 4.176 23 C -0.171 4.171 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.166 0.834 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.880 -19.249 0.089 19.464 hybrid contribution -0.184 1.018 0.534 1.164 sum 2.696 -18.232 0.623 18.440 Atomic orbital electron populations 1.69969 1.06028 1.26583 1.50695 1.24989 0.94826 0.99191 0.95286 0.86598 0.79820 0.83478 0.78121 1.20637 1.21241 1.19913 1.21169 0.92999 0.90990 1.50844 0.92749 1.19066 0.94011 0.90396 0.97704 1.22190 0.97025 0.87912 0.98874 1.60540 1.19404 1.01831 1.49708 1.20230 0.94506 0.87914 0.94246 0.88908 1.21148 0.91684 0.92281 0.93652 1.22217 0.96145 1.00473 0.97661 1.21660 0.99859 0.92670 0.96644 1.22045 0.96988 0.98754 1.02841 1.22627 0.92855 0.96775 0.94505 1.67323 1.36764 0.98937 1.16075 1.23184 0.98098 0.97831 0.96141 1.23234 0.96347 0.98655 0.99554 1.22707 0.97387 0.99724 0.97778 1.22963 0.96261 0.98416 0.99435 0.93008 0.95667 0.96782 0.96267 0.92241 0.84190 0.82878 0.85228 0.85524 0.83359 0.89046 0.92712 0.86490 0.92184 0.91037 0.90335 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.38 5.42 -3.82 -0.02 1.36 16 11 N -0.69 -11.66 4.60 -107.95 -0.50 -12.15 16 12 C 0.14 2.14 2.64 -68.87 -0.18 1.96 16 13 H 0.09 1.48 7.80 -51.93 -0.40 1.08 16 14 C 0.15 2.12 4.35 -82.59 -0.36 1.76 16 15 C -0.15 -1.98 9.38 -39.44 -0.37 -2.35 16 16 C -0.08 -0.93 10.18 -39.28 -0.40 -1.33 16 17 C -0.19 -1.89 10.11 -39.44 -0.40 -2.29 16 18 C 0.09 0.98 11.18 -17.55 -0.20 0.79 16 19 N -0.48 -6.34 6.62 -9.47 -0.06 -6.40 16 20 C -0.13 -1.83 3.54 -89.71 -0.32 -2.15 16 21 C -0.14 -1.77 7.34 -25.92 -0.19 -1.96 16 22 C -0.14 -1.64 8.08 -25.92 -0.21 -1.85 16 23 C -0.13 -1.73 7.25 -25.82 -0.19 -1.91 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.39 7.46 -51.93 -0.39 0.00 16 28 H 0.06 1.23 8.06 -51.92 -0.42 0.81 16 29 H 0.34 5.68 8.48 -39.29 -0.33 5.35 16 30 H 0.15 2.23 6.90 -52.48 -0.36 1.87 16 31 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.09 1.36 7.48 -51.93 -0.39 0.97 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.12 1.54 5.51 -51.93 -0.29 1.26 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.07 5.85 -51.93 -0.30 0.77 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -29.55 321.24 -9.62 -39.17 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.23 Total: 4.81 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -3.39 Total: -20.85 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.18 Total: -44.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.55 -9.62 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599568682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.246 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds