Wall clock time and date at job start Mon Mar 30 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00201 * 2 1 4 4 H 1.48496 * 109.47228 * 269.99954 * 3 2 1 5 5 H 1.48507 * 109.46951 * 30.00460 * 3 2 1 6 6 H 1.48501 * 109.46898 * 149.99754 * 3 2 1 7 7 C 1.37876 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47475 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47414 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00120 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.46682 * 325.00117 * 12 11 10 14 14 C 1.50701 * 109.47314 * 205.00266 * 12 11 10 15 15 C 1.38225 * 119.61324 * 4.72258 * 14 12 11 16 16 C 1.38628 * 119.15729 * 179.75864 * 15 14 12 17 17 C 1.38674 * 118.42248 * 0.50992 * 16 15 14 18 18 C 1.38182 * 119.16036 * 359.73282 * 17 16 15 19 19 N 1.31856 * 119.61976 * 184.99838 * 14 12 11 20 20 C 1.52994 * 109.47402 * 84.99513 * 12 11 10 21 21 C 1.53782 * 113.61734 * 184.99959 * 20 12 11 22 22 C 1.53781 * 87.08260 * 220.02231 * 21 20 12 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 20 24 24 H 0.96998 * 119.99855 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47115 * 59.99787 * 9 7 2 26 26 H 1.08999 * 109.47119 * 299.99828 * 9 7 2 27 27 H 1.09003 * 109.46961 * 59.99294 * 10 9 7 28 28 H 1.09007 * 109.46790 * 300.00116 * 10 9 7 29 29 H 1.00896 * 110.99847 * 303.94951 * 11 10 9 30 30 H 1.08005 * 120.42686 * 359.97438 * 15 14 12 31 31 H 1.08004 * 120.79429 * 180.21752 * 16 15 14 32 32 H 1.08000 * 120.42216 * 179.71377 * 17 16 15 33 33 H 1.07999 * 119.61941 * 180.02562 * 18 17 16 34 34 H 1.09002 * 112.84929 * 316.20035 * 20 12 11 35 35 H 1.09001 * 113.61250 * 105.47049 * 21 20 12 36 36 H 1.08997 * 113.61225 * 334.56890 * 21 20 12 37 37 H 1.09002 * 113.61445 * 139.98212 * 22 21 20 38 38 H 1.09002 * 113.61408 * 270.79943 * 22 21 20 39 39 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 40 40 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 7 1.5106 -4.9343 -0.0020 12 6 2.4350 -6.0760 -0.0024 13 1 3.3179 -5.8283 -0.5917 14 6 1.7505 -7.2765 -0.6034 15 6 0.4810 -7.1444 -1.1340 16 6 -0.1379 -8.2538 -1.6890 17 6 0.5420 -9.4624 -1.6799 18 6 1.8070 -9.5191 -1.1269 19 7 2.3672 -8.4419 -0.6121 20 6 2.8537 -6.3938 1.4345 21 6 3.9185 -7.4987 1.5358 22 6 3.1469 -8.0210 2.7592 23 6 1.8962 -7.3580 2.1582 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 0.8739 -4.9845 0.7791 30 1 -0.0211 -6.1882 -1.1195 31 1 -1.1280 -8.1797 -2.1141 32 1 0.0884 -10.3482 -2.0994 33 1 2.3434 -10.4565 -1.1163 34 1 3.0941 -5.5014 2.0125 35 1 4.9142 -7.1250 1.7745 36 1 3.9149 -8.1872 0.6909 37 1 3.0853 -9.1084 2.8051 38 1 3.4677 -7.5752 3.7008 39 1 1.3389 -8.0080 1.4837 40 1 1.2618 -6.8709 2.8987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599568682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:13 Heat of formation + Delta-G solvation = 36.936240 kcal Electronic energy + Delta-G solvation = -19316.494488 eV Core-core repulsion = 16516.878676 eV Total energy + Delta-G solvation = -2799.615812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66962 -39.44146 -37.13855 -35.07466 -33.33214 -32.79417 -30.77497 -28.16317 -26.54093 -25.84574 -24.64155 -24.10420 -22.42837 -22.09203 -20.19619 -18.51815 -17.76693 -17.13757 -16.88562 -16.48918 -16.31336 -16.11869 -15.32501 -15.20522 -14.97386 -14.44820 -14.12809 -13.96132 -13.65288 -13.34092 -13.16349 -13.02542 -12.84597 -12.63094 -12.44789 -12.25667 -12.10079 -11.62457 -11.41572 -11.34974 -11.14451 -11.07892 -10.64998 -10.55289 -10.13603 -9.74188 -9.21712 -8.19889 -6.30794 0.31404 0.48453 1.40777 1.42015 1.52939 2.40606 2.96015 2.98585 3.13975 3.58287 3.74424 3.86734 3.97678 4.02145 4.05696 4.14628 4.35893 4.38560 4.47063 4.54111 4.61223 4.68468 4.73020 4.83867 4.93932 5.01112 5.04630 5.06469 5.09671 5.20519 5.31921 5.41660 5.45815 5.47671 5.68944 5.70210 5.79013 5.99082 6.13697 6.25967 6.48215 6.86137 7.16062 7.38368 8.92219 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.004458 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.515610 B = 6279.109967 C = 6985.505817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.034 3.966 10 C 0.088 3.912 11 N -0.683 5.683 12 C 0.147 3.853 13 H 0.079 0.921 14 C 0.134 3.866 15 C -0.166 4.166 16 C -0.085 4.085 17 C -0.175 4.175 18 C 0.085 3.915 19 N -0.493 5.493 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.130 4.130 24 H 0.264 0.736 25 H -0.004 1.004 26 H -0.008 1.008 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.341 0.659 30 H 0.134 0.866 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.180 0.820 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 -20.936 0.339 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.040 4.040 11 N -0.312 5.312 12 C 0.036 3.964 13 H 0.097 0.903 14 C -0.002 4.002 15 C -0.187 4.187 16 C -0.110 4.110 17 C -0.195 4.195 18 C -0.072 4.072 19 N -0.203 5.203 20 C -0.156 4.156 21 C -0.172 4.172 22 C -0.166 4.166 23 C -0.167 4.167 24 H 0.072 0.928 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.197 0.803 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.709 -20.870 0.005 21.197 hybrid contribution -0.494 1.405 0.514 1.575 sum 3.215 -19.465 0.518 19.735 Atomic orbital electron populations 1.70101 1.07756 1.27749 1.51476 1.25929 0.95731 1.03220 0.94643 0.85457 0.78660 0.78496 0.78485 1.19809 1.20694 1.18798 1.21604 0.93502 0.92286 1.50852 0.92272 1.18897 0.94234 0.92052 0.95167 1.21771 0.95608 0.87899 0.98757 1.60419 1.19625 1.01273 1.49910 1.20149 0.93579 0.87598 0.95081 0.90266 1.20869 0.92036 0.92404 0.94935 1.22149 0.96428 1.00771 0.99306 1.21947 1.00767 0.92403 0.95926 1.22425 0.96405 0.99303 1.01330 1.23235 0.93481 0.97076 0.93458 1.67294 1.37128 0.99050 1.16786 1.23145 0.99399 0.97909 0.95186 1.23187 0.96172 0.97918 0.99971 1.22673 0.96010 1.00352 0.97567 1.22911 0.96522 0.98104 0.99174 0.92769 0.98555 0.98918 0.96052 0.92553 0.84076 0.84785 0.83175 0.82021 0.80269 0.90351 0.92333 0.86678 0.91051 0.90324 0.90794 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.81 5.23 29.85 0.16 1.97 16 10 C 0.09 3.74 5.42 86.30 0.47 4.20 16 11 N -0.68 -24.27 4.60 -495.44 -2.28 -26.55 16 12 C 0.15 4.51 2.64 44.17 0.12 4.63 16 13 H 0.08 2.61 7.80 -2.38 -0.02 2.59 16 14 C 0.13 3.78 4.35 42.55 0.19 3.97 16 15 C -0.17 -4.55 9.38 22.36 0.21 -4.34 16 16 C -0.08 -1.77 10.18 22.47 0.23 -1.54 16 17 C -0.18 -2.99 10.11 22.36 0.23 -2.76 16 18 C 0.08 1.62 11.18 84.67 0.95 2.56 16 19 N -0.49 -12.29 6.62 -183.89 -1.22 -13.50 16 20 C -0.14 -3.78 3.54 -10.21 -0.04 -3.81 16 21 C -0.13 -3.27 7.34 31.12 0.23 -3.04 16 22 C -0.13 -2.83 8.08 31.12 0.25 -2.58 16 23 C -0.13 -3.28 7.25 31.18 0.23 -3.05 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.02 0.89 7.46 -2.39 -0.02 0.87 16 28 H 0.06 2.40 8.06 -2.38 -0.02 2.39 16 29 H 0.34 12.01 8.48 -89.70 -0.76 11.24 16 30 H 0.13 4.11 6.90 -2.91 -0.02 4.09 16 31 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.08 2.36 7.48 -2.39 -0.02 2.35 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 2.89 5.51 -2.39 -0.01 2.88 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.96 5.85 -2.39 -0.01 1.95 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -64.38 321.24 2.98 -61.41 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.26 Total: 22.88 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.90 Total: -34.13 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -3.21 Total: -96.65 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -64.38 2.98 -61.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599568682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.342 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds