Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47037 * 239.99938 * 3 2 1 5 5 H 1.48502 * 109.47367 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47421 * 120.00089 * 3 2 1 7 7 C 1.37876 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99756 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46780 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47332 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00182 * 184.93641 * 11 10 9 13 13 H 1.09000 * 109.47387 * 12.83367 * 12 11 10 14 14 C 1.50703 * 109.47227 * 132.82828 * 12 11 10 15 15 C 1.38223 * 119.62151 * 242.93644 * 14 12 11 16 16 C 1.38629 * 119.16454 * 180.27481 * 15 14 12 17 17 C 1.38677 * 118.41611 * 359.47974 * 16 15 14 18 18 C 1.38184 * 119.16475 * 0.47661 * 17 16 15 19 19 N 1.31858 * 119.61684 * 62.91353 * 14 12 11 20 20 C 1.52999 * 109.47155 * 252.82797 * 12 11 10 21 21 C 1.53783 * 113.61274 * 159.17463 * 20 12 11 22 22 C 1.53958 * 87.01562 * 220.04863 * 21 20 12 23 23 C 1.53778 * 87.11337 * 25.36267 * 22 21 20 24 24 H 0.96995 * 119.99971 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47143 * 60.00366 * 9 7 2 26 26 H 1.08991 * 109.47225 * 299.99465 * 9 7 2 27 27 H 1.09004 * 109.47400 * 59.99711 * 10 9 7 28 28 H 1.09002 * 109.47161 * 300.00124 * 10 9 7 29 29 H 1.00899 * 111.00208 * 60.97865 * 11 10 9 30 30 H 1.08003 * 120.41706 * 0.02562 * 15 14 12 31 31 H 1.07997 * 120.79084 * 179.72332 * 16 15 14 32 32 H 1.08002 * 120.41455 * 180.21726 * 17 16 15 33 33 H 1.07999 * 119.61736 * 179.76289 * 18 17 16 34 34 H 1.09006 * 112.85095 * 290.36845 * 20 12 11 35 35 H 1.08997 * 113.61565 * 334.56316 * 21 20 12 36 36 H 1.08996 * 113.61532 * 105.47229 * 21 20 12 37 37 H 1.09006 * 113.53734 * 270.80666 * 22 21 20 38 38 H 1.08999 * 113.74267 * 139.94648 * 22 21 20 39 39 H 1.08999 * 113.61423 * 220.08768 * 23 22 21 40 40 H 1.08996 * 113.61301 * 89.18623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5108 -4.9343 0.0020 12 6 2.4309 -6.0733 0.1198 13 1 3.4191 -5.7140 0.4068 14 6 1.9188 -7.0264 1.1689 15 6 2.6706 -7.2600 2.3050 16 6 2.1932 -8.1429 3.2612 17 6 0.9667 -8.7522 3.0431 18 6 0.2708 -8.4688 1.8834 19 7 0.7585 -7.6274 0.9926 20 6 2.5219 -6.7966 -1.2254 21 6 3.7882 -7.6557 -1.3784 22 6 3.8545 -7.1554 -2.8329 23 6 3.0727 -5.9181 -2.3611 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 2.8726 -3.6039 0.8909 28 1 2.8712 -3.6047 -0.8890 29 1 0.9338 -5.0191 -0.8214 30 1 3.6199 -6.7641 2.4440 31 1 2.7611 -8.3482 4.1566 32 1 0.5625 -9.4428 3.7685 33 1 -0.6833 -8.9421 1.7043 34 1 1.6034 -7.3224 -1.4863 35 1 4.6217 -7.3184 -0.7623 36 1 3.6026 -8.7262 -1.2919 37 1 3.3012 -7.7805 -3.5339 38 1 4.8649 -6.9297 -3.1738 39 1 2.3104 -5.5880 -3.0668 40 1 3.7103 -5.1050 -2.0141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599568683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = 42.211205 kcal Electronic energy + Delta-G solvation = -19133.824253 eV Core-core repulsion = 16334.437181 eV Total energy + Delta-G solvation = -2799.387072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29799 -38.78640 -35.44365 -33.12972 -32.27391 -31.56801 -29.26755 -26.76686 -25.46835 -24.04748 -23.68898 -23.17459 -20.86013 -20.64151 -19.12812 -16.83157 -16.34668 -16.04041 -15.74434 -15.48503 -15.13315 -14.43340 -14.02206 -13.63654 -13.57128 -13.28011 -12.97750 -12.64894 -12.33125 -12.18454 -11.96903 -11.57469 -11.28113 -11.11689 -10.89175 -10.67774 -10.54929 -10.33575 -10.21866 -9.95926 -9.73585 -9.42744 -9.17932 -9.12961 -8.79380 -8.31401 -7.67185 -5.95908 -3.98643 1.25463 1.42288 3.35126 3.39605 3.41664 3.91875 4.42535 4.45012 4.57476 4.67779 4.73992 4.89089 4.90494 4.94069 5.16271 5.22202 5.37389 5.39802 5.47026 5.54018 5.72835 5.74909 5.78789 5.82685 5.90737 5.94119 6.08299 6.22740 6.29671 6.29954 6.34670 6.47976 6.57363 6.83159 7.03423 7.53783 7.78893 7.86655 8.03010 8.14951 8.23905 8.47487 9.08761 9.64772 11.15465 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.004861 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.229793 B = 5758.190690 C = 6708.015162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.067 3.933 11 N -0.675 5.675 12 C 0.143 3.857 13 H 0.079 0.921 14 C 0.164 3.836 15 C -0.170 4.170 16 C -0.077 4.077 17 C -0.188 4.188 18 C 0.098 3.902 19 N -0.466 5.466 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.139 4.139 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.024 0.976 27 H 0.055 0.945 28 H 0.019 0.981 29 H 0.344 0.656 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 -18.970 1.134 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.061 4.061 11 N -0.306 5.306 12 C 0.032 3.968 13 H 0.097 0.903 14 C 0.025 3.975 15 C -0.190 4.190 16 C -0.103 4.103 17 C -0.208 4.208 18 C -0.059 4.059 19 N -0.175 5.175 20 C -0.142 4.142 21 C -0.172 4.172 22 C -0.177 4.177 23 C -0.176 4.176 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.168 0.832 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.320 -18.619 1.046 19.393 hybrid contribution 1.232 0.758 0.107 1.450 sum 6.552 -17.862 1.153 19.060 Atomic orbital electron populations 1.69969 1.06022 1.26633 1.50576 1.24995 0.94813 0.99135 0.95358 0.86670 0.79574 0.83247 0.78546 1.20302 1.21288 1.20277 1.21139 0.92870 0.91063 1.50949 0.92888 1.19030 0.94012 0.90227 0.97730 1.22285 0.96905 0.88499 0.98450 1.60424 1.22673 1.00736 1.46723 1.20459 0.95303 0.89863 0.91160 0.90268 1.21319 0.89475 0.93017 0.93667 1.21960 1.01875 0.99986 0.95226 1.21494 0.95517 0.94857 0.98438 1.22049 0.96577 1.02601 0.99571 1.22739 0.99138 0.94004 0.90040 1.67451 1.12158 1.06616 1.31276 1.23136 0.98689 0.97726 0.94667 1.22932 0.97976 0.99369 0.96944 1.22803 1.00435 0.98007 0.96501 1.22976 0.99959 0.96830 0.97865 0.92971 0.96756 0.95809 0.92678 0.96297 0.83752 0.85272 0.85322 0.85385 0.83235 0.88173 0.90311 0.91966 0.90469 0.91672 0.91259 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.73 5.27 -27.88 -0.15 0.58 16 10 C 0.07 1.40 5.28 -3.82 -0.02 1.38 16 11 N -0.68 -12.49 6.16 -107.95 -0.66 -13.16 16 12 C 0.14 2.17 2.23 -68.87 -0.15 2.01 16 13 H 0.08 1.17 7.07 -51.93 -0.37 0.80 16 14 C 0.16 2.47 5.71 -82.58 -0.47 1.99 16 15 C -0.17 -2.22 9.71 -39.44 -0.38 -2.61 16 16 C -0.08 -0.86 10.18 -39.27 -0.40 -1.26 16 17 C -0.19 -2.05 10.11 -39.44 -0.40 -2.44 16 18 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 19 N -0.47 -7.15 9.89 -9.47 -0.09 -7.24 16 20 C -0.12 -1.61 2.80 -89.81 -0.25 -1.86 16 21 C -0.13 -1.50 7.62 -25.82 -0.20 -1.69 16 22 C -0.14 -1.51 8.09 -25.83 -0.21 -1.72 16 23 C -0.14 -1.78 6.99 -25.92 -0.18 -1.96 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.16 8.01 -51.93 -0.42 0.75 16 28 H 0.02 0.38 6.67 -51.93 -0.35 0.04 16 29 H 0.34 6.35 8.11 -39.29 -0.32 6.03 16 30 H 0.13 1.47 7.95 -52.48 -0.42 1.06 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.10 1.41 7.90 -51.93 -0.41 1.00 16 35 H 0.08 0.84 7.99 -51.93 -0.41 0.43 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.17 6.91 -51.93 -0.36 0.81 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -31.54 329.62 -9.89 -41.43 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.40 Total: 3.93 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.42 Total: -20.17 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.02 Total: -46.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.54 -9.89 -41.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599568683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.641 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds