Wall clock time and date at job start Mon Mar 30 2020 06:44:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86796 * 119.99861 * 2 1
4 4 H 1.48505 * 109.47037 * 239.99938 * 3 2 1
5 5 H 1.48502 * 109.47367 * 359.97438 * 3 2 1
6 6 H 1.48500 * 109.47421 * 120.00089 * 3 2 1
7 7 C 1.37876 * 119.99903 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99848 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99756 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.46780 * 179.97438 * 9 7 2
11 11 N 1.46899 * 109.47332 * 180.02562 * 10 9 7
12 12 C 1.46896 * 111.00182 * 184.93641 * 11 10 9
13 13 H 1.09000 * 109.47387 * 12.83367 * 12 11 10
14 14 C 1.50703 * 109.47227 * 132.82828 * 12 11 10
15 15 C 1.38223 * 119.62151 * 242.93644 * 14 12 11
16 16 C 1.38629 * 119.16454 * 180.27481 * 15 14 12
17 17 C 1.38677 * 118.41611 * 359.47974 * 16 15 14
18 18 C 1.38184 * 119.16475 * 0.47661 * 17 16 15
19 19 N 1.31858 * 119.61684 * 62.91353 * 14 12 11
20 20 C 1.52999 * 109.47155 * 252.82797 * 12 11 10
21 21 C 1.53783 * 113.61274 * 159.17463 * 20 12 11
22 22 C 1.53958 * 87.01562 * 220.04863 * 21 20 12
23 23 C 1.53778 * 87.11337 * 25.36267 * 22 21 20
24 24 H 0.96995 * 119.99971 * 359.97438 * 1 2 3
25 25 H 1.08999 * 109.47143 * 60.00366 * 9 7 2
26 26 H 1.08991 * 109.47225 * 299.99465 * 9 7 2
27 27 H 1.09004 * 109.47400 * 59.99711 * 10 9 7
28 28 H 1.09002 * 109.47161 * 300.00124 * 10 9 7
29 29 H 1.00899 * 111.00208 * 60.97865 * 11 10 9
30 30 H 1.08003 * 120.41706 * 0.02562 * 15 14 12
31 31 H 1.07997 * 120.79084 * 179.72332 * 16 15 14
32 32 H 1.08002 * 120.41455 * 180.21726 * 17 16 15
33 33 H 1.07999 * 119.61736 * 179.76289 * 18 17 16
34 34 H 1.09006 * 112.85095 * 290.36845 * 20 12 11
35 35 H 1.08997 * 113.61565 * 334.56316 * 21 20 12
36 36 H 1.08996 * 113.61532 * 105.47229 * 21 20 12
37 37 H 1.09006 * 113.53734 * 270.80666 * 22 21 20
38 38 H 1.08999 * 113.74267 * 139.94648 * 22 21 20
39 39 H 1.08999 * 113.61423 * 220.08768 * 23 22 21
40 40 H 1.08996 * 113.61301 * 89.18623 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6964 -1.2125
5 1 1.2841 2.7465 -0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0017
10 6 2.2452 -3.6621 0.0015
11 7 1.5108 -4.9343 0.0020
12 6 2.4309 -6.0733 0.1198
13 1 3.4191 -5.7140 0.4068
14 6 1.9188 -7.0264 1.1689
15 6 2.6706 -7.2600 2.3050
16 6 2.1932 -8.1429 3.2612
17 6 0.9667 -8.7522 3.0431
18 6 0.2708 -8.4688 1.8834
19 7 0.7585 -7.6274 0.9926
20 6 2.5219 -6.7966 -1.2254
21 6 3.7882 -7.6557 -1.3784
22 6 3.8545 -7.1554 -2.8329
23 6 3.0727 -5.9181 -2.3611
24 1 -0.4850 0.8400 0.0004
25 1 0.6240 -2.5575 -0.8880
26 1 0.6248 -2.5563 0.8919
27 1 2.8726 -3.6039 0.8909
28 1 2.8712 -3.6047 -0.8890
29 1 0.9338 -5.0191 -0.8214
30 1 3.6199 -6.7641 2.4440
31 1 2.7611 -8.3482 4.1566
32 1 0.5625 -9.4428 3.7685
33 1 -0.6833 -8.9421 1.7043
34 1 1.6034 -7.3224 -1.4863
35 1 4.6217 -7.3184 -0.7623
36 1 3.6026 -8.7262 -1.2919
37 1 3.3012 -7.7805 -3.5339
38 1 4.8649 -6.9297 -3.1738
39 1 2.3104 -5.5880 -3.0668
40 1 3.7103 -5.1050 -2.0141
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000599568683.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:44:15
Heat of formation + Delta-G solvation = 22.904395 kcal
Electronic energy + Delta-G solvation = -19134.661460 eV
Core-core repulsion = 16334.437181 eV
Total energy + Delta-G solvation = -2800.224278 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.31284 -39.79637 -36.95628 -35.05358 -33.33716 -32.89503 -30.88852 -28.18303
-26.49433 -25.70613 -24.80441 -24.21615 -22.49366 -21.93663 -20.19768 -18.50942
-17.76763 -17.14820 -16.91236 -16.61589 -16.41411 -16.10680 -15.41369 -15.04913
-14.66687 -14.47825 -14.10278 -14.07209 -13.83565 -13.40017 -13.20830 -12.88866
-12.82027 -12.62821 -12.51598 -12.29399 -12.01863 -11.70447 -11.42399 -11.34632
-11.23688 -11.11656 -10.67864 -10.55626 -10.22088 -9.81282 -9.12778 -8.19093
-6.31185 0.29170 0.50179 1.40290 1.43976 1.51850 2.40985 2.89960
3.14167 3.39164 3.43109 3.69012 3.75918 3.87544 3.96060 4.11840
4.20240 4.26966 4.33192 4.38050 4.50599 4.60136 4.63489 4.79738
4.83646 4.86252 4.91889 4.97191 5.05835 5.06655 5.10801 5.31287
5.32578 5.36769 5.45811 5.58258 5.68547 5.80089 5.91054 6.16158
6.30727 6.54717 6.86445 7.24913 7.38207 8.93114
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.018524 B = 0.004861 C = 0.004173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1511.229793 B = 5758.190690 C = 6708.015162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.000 4.000
3 Si 0.968 3.032
4 H -0.265 1.265
5 H -0.284 1.284
6 H -0.266 1.266
7 C -0.543 4.543
8 H 0.063 0.937
9 C 0.035 3.965
10 C 0.088 3.912
11 N -0.685 5.685
12 C 0.146 3.854
13 H 0.082 0.918
14 C 0.137 3.863
15 C -0.182 4.182
16 C -0.077 4.077
17 C -0.179 4.179
18 C 0.080 3.920
19 N -0.499 5.499
20 C -0.120 4.120
21 C -0.124 4.124
22 C -0.128 4.128
23 C -0.145 4.145
24 H 0.263 0.737
25 H -0.012 1.012
26 H -0.014 1.014
27 H 0.055 0.945
28 H 0.028 0.972
29 H 0.340 0.660
30 H 0.141 0.859
31 H 0.161 0.839
32 H 0.163 0.837
33 H 0.170 0.830
34 H 0.088 0.912
35 H 0.085 0.915
36 H 0.068 0.932
37 H 0.086 0.914
38 H 0.077 0.923
39 H 0.059 0.941
40 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.882 -19.938 1.891 21.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.198 4.198
3 Si 0.792 3.208
4 H -0.190 1.190
5 H -0.209 1.209
6 H -0.191 1.191
7 C -0.581 4.581
8 H 0.081 0.919
9 C -0.002 4.002
10 C -0.040 4.040
11 N -0.315 5.315
12 C 0.036 3.964
13 H 0.100 0.900
14 C -0.001 4.001
15 C -0.203 4.203
16 C -0.103 4.103
17 C -0.199 4.199
18 C -0.077 4.077
19 N -0.208 5.208
20 C -0.140 4.140
21 C -0.162 4.162
22 C -0.166 4.166
23 C -0.183 4.183
24 H 0.072 0.928
25 H 0.006 0.994
26 H 0.005 0.995
27 H 0.074 0.926
28 H 0.046 0.954
29 H 0.158 0.842
30 H 0.159 0.841
31 H 0.179 0.821
32 H 0.180 0.820
33 H 0.187 0.813
34 H 0.106 0.894
35 H 0.104 0.896
36 H 0.087 0.913
37 H 0.104 0.896
38 H 0.096 0.904
39 H 0.078 0.922
40 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 7.122 -19.613 1.803 20.944
hybrid contribution 0.592 0.969 -0.070 1.137
sum 7.714 -18.644 1.733 20.251
Atomic orbital electron populations
1.70123 1.07969 1.27823 1.51464 1.26003 0.95723 1.03460 0.94610
0.85465 0.78219 0.77866 0.79265 1.18963 1.20908 1.19090 1.21580
0.93552 0.92100 1.50891 0.91912 1.18874 0.94295 0.92475 0.94598
1.21870 0.95343 0.88007 0.98787 1.60326 1.23546 1.00957 1.46689
1.20485 0.94460 0.88791 0.92664 0.90005 1.21284 0.90316 0.94012
0.94534 1.22190 1.02348 1.00668 0.95052 1.21923 0.95788 0.93722
0.98890 1.22443 0.96060 1.02138 0.99247 1.23212 1.00204 0.93814
0.90500 1.67376 1.12739 1.07833 1.32887 1.23038 0.99281 0.98116
0.93583 1.22885 0.96751 0.99341 0.97217 1.22770 1.00830 0.96488
0.96474 1.22981 1.00009 0.97431 0.97865 0.92804 0.99372 0.99520
0.92611 0.95421 0.84193 0.84111 0.82104 0.81967 0.81282 0.89365
0.89599 0.91299 0.89569 0.90387 0.92186 0.90811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16
2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16
3 Si 0.97 44.83 29.54 68.60 2.03 46.85 16
4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16
5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16
8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16
9 C 0.04 1.95 5.27 29.85 0.16 2.10 16
10 C 0.09 3.83 5.28 86.30 0.46 4.28 16
11 N -0.69 -26.27 6.16 -495.44 -3.05 -29.32 16
12 C 0.15 4.46 2.23 44.17 0.10 4.56 16
13 H 0.08 2.40 7.07 -2.39 -0.02 2.38 16
14 C 0.14 4.08 5.71 42.55 0.24 4.33 16
15 C -0.18 -4.53 9.71 22.36 0.22 -4.31 16
16 C -0.08 -1.53 10.18 22.47 0.23 -1.30 16
17 C -0.18 -3.43 10.11 22.36 0.23 -3.20 16
18 C 0.08 1.92 11.18 84.67 0.95 2.86 16
19 N -0.50 -15.30 9.89 -183.88 -1.82 -17.12 16
20 C -0.12 -3.16 2.80 -10.27 -0.03 -3.19 16
21 C -0.12 -2.59 7.62 31.18 0.24 -2.35 16
22 C -0.13 -2.57 8.09 31.18 0.25 -2.31 16
23 C -0.15 -3.72 6.99 31.12 0.22 -3.51 16
24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16
26 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
27 H 0.06 2.39 8.01 -2.38 -0.02 2.37 16
28 H 0.03 1.14 6.67 -2.39 -0.02 1.12 16
29 H 0.34 13.25 8.11 -89.69 -0.73 12.52 16
30 H 0.14 3.01 7.95 -2.91 -0.02 2.99 16
31 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16
32 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16
33 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16
34 H 0.09 2.54 7.90 -2.38 -0.02 2.52 16
35 H 0.09 1.68 7.99 -2.39 -0.02 1.66 16
36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16
38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
40 H 0.07 2.04 6.91 -2.39 -0.02 2.03 16
Total: -1.00 -69.60 329.62 1.67 -67.93
By element:
Atomic # 1 Polarization: 22.56 SS G_CDS: 0.28 Total: 22.84 kcal
Atomic # 6 Polarization: -36.88 SS G_CDS: 3.95 Total: -32.94 kcal
Atomic # 7 Polarization: -100.10 SS G_CDS: -4.58 Total: -104.69 kcal
Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal
Total: -69.60 1.67 -67.93 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599568683.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.835 kcal
(2) G-P(sol) polarization free energy of solvation -69.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.904 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds