Wall clock time and date at job start Mon Mar 30 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47037 * 239.99938 * 3 2 1 5 5 H 1.48502 * 109.47367 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47421 * 120.00089 * 3 2 1 7 7 C 1.37876 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99756 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46780 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47332 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00182 * 184.93641 * 11 10 9 13 13 H 1.09000 * 109.47387 * 12.83367 * 12 11 10 14 14 C 1.50703 * 109.47227 * 132.82828 * 12 11 10 15 15 C 1.38223 * 119.62151 * 242.93644 * 14 12 11 16 16 C 1.38629 * 119.16454 * 180.27481 * 15 14 12 17 17 C 1.38677 * 118.41611 * 359.47974 * 16 15 14 18 18 C 1.38184 * 119.16475 * 0.47661 * 17 16 15 19 19 N 1.31858 * 119.61684 * 62.91353 * 14 12 11 20 20 C 1.52999 * 109.47155 * 252.82797 * 12 11 10 21 21 C 1.53783 * 113.61274 * 159.17463 * 20 12 11 22 22 C 1.53958 * 87.01562 * 220.04863 * 21 20 12 23 23 C 1.53778 * 87.11337 * 25.36267 * 22 21 20 24 24 H 0.96995 * 119.99971 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47143 * 60.00366 * 9 7 2 26 26 H 1.08991 * 109.47225 * 299.99465 * 9 7 2 27 27 H 1.09004 * 109.47400 * 59.99711 * 10 9 7 28 28 H 1.09002 * 109.47161 * 300.00124 * 10 9 7 29 29 H 1.00899 * 111.00208 * 60.97865 * 11 10 9 30 30 H 1.08003 * 120.41706 * 0.02562 * 15 14 12 31 31 H 1.07997 * 120.79084 * 179.72332 * 16 15 14 32 32 H 1.08002 * 120.41455 * 180.21726 * 17 16 15 33 33 H 1.07999 * 119.61736 * 179.76289 * 18 17 16 34 34 H 1.09006 * 112.85095 * 290.36845 * 20 12 11 35 35 H 1.08997 * 113.61565 * 334.56316 * 21 20 12 36 36 H 1.08996 * 113.61532 * 105.47229 * 21 20 12 37 37 H 1.09006 * 113.53734 * 270.80666 * 22 21 20 38 38 H 1.08999 * 113.74267 * 139.94648 * 22 21 20 39 39 H 1.08999 * 113.61423 * 220.08768 * 23 22 21 40 40 H 1.08996 * 113.61301 * 89.18623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5108 -4.9343 0.0020 12 6 2.4309 -6.0733 0.1198 13 1 3.4191 -5.7140 0.4068 14 6 1.9188 -7.0264 1.1689 15 6 2.6706 -7.2600 2.3050 16 6 2.1932 -8.1429 3.2612 17 6 0.9667 -8.7522 3.0431 18 6 0.2708 -8.4688 1.8834 19 7 0.7585 -7.6274 0.9926 20 6 2.5219 -6.7966 -1.2254 21 6 3.7882 -7.6557 -1.3784 22 6 3.8545 -7.1554 -2.8329 23 6 3.0727 -5.9181 -2.3611 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 2.8726 -3.6039 0.8909 28 1 2.8712 -3.6047 -0.8890 29 1 0.9338 -5.0191 -0.8214 30 1 3.6199 -6.7641 2.4440 31 1 2.7611 -8.3482 4.1566 32 1 0.5625 -9.4428 3.7685 33 1 -0.6833 -8.9421 1.7043 34 1 1.6034 -7.3224 -1.4863 35 1 4.6217 -7.3184 -0.7623 36 1 3.6026 -8.7262 -1.2919 37 1 3.3012 -7.7805 -3.5339 38 1 4.8649 -6.9297 -3.1738 39 1 2.3104 -5.5880 -3.0668 40 1 3.7103 -5.1050 -2.0141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599568683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:15 Heat of formation + Delta-G solvation = 22.904395 kcal Electronic energy + Delta-G solvation = -19134.661460 eV Core-core repulsion = 16334.437181 eV Total energy + Delta-G solvation = -2800.224278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31284 -39.79637 -36.95628 -35.05358 -33.33716 -32.89503 -30.88852 -28.18303 -26.49433 -25.70613 -24.80441 -24.21615 -22.49366 -21.93663 -20.19768 -18.50942 -17.76763 -17.14820 -16.91236 -16.61589 -16.41411 -16.10680 -15.41369 -15.04913 -14.66687 -14.47825 -14.10278 -14.07209 -13.83565 -13.40017 -13.20830 -12.88866 -12.82027 -12.62821 -12.51598 -12.29399 -12.01863 -11.70447 -11.42399 -11.34632 -11.23688 -11.11656 -10.67864 -10.55626 -10.22088 -9.81282 -9.12778 -8.19093 -6.31185 0.29170 0.50179 1.40290 1.43976 1.51850 2.40985 2.89960 3.14167 3.39164 3.43109 3.69012 3.75918 3.87544 3.96060 4.11840 4.20240 4.26966 4.33192 4.38050 4.50599 4.60136 4.63489 4.79738 4.83646 4.86252 4.91889 4.97191 5.05835 5.06655 5.10801 5.31287 5.32578 5.36769 5.45811 5.58258 5.68547 5.80089 5.91054 6.16158 6.30727 6.54717 6.86445 7.24913 7.38207 8.93114 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.004861 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.229793 B = 5758.190690 C = 6708.015162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.088 3.912 11 N -0.685 5.685 12 C 0.146 3.854 13 H 0.082 0.918 14 C 0.137 3.863 15 C -0.182 4.182 16 C -0.077 4.077 17 C -0.179 4.179 18 C 0.080 3.920 19 N -0.499 5.499 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.145 4.145 24 H 0.263 0.737 25 H -0.012 1.012 26 H -0.014 1.014 27 H 0.055 0.945 28 H 0.028 0.972 29 H 0.340 0.660 30 H 0.141 0.859 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 -19.938 1.891 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.002 4.002 10 C -0.040 4.040 11 N -0.315 5.315 12 C 0.036 3.964 13 H 0.100 0.900 14 C -0.001 4.001 15 C -0.203 4.203 16 C -0.103 4.103 17 C -0.199 4.199 18 C -0.077 4.077 19 N -0.208 5.208 20 C -0.140 4.140 21 C -0.162 4.162 22 C -0.166 4.166 23 C -0.183 4.183 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.005 0.995 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.122 -19.613 1.803 20.944 hybrid contribution 0.592 0.969 -0.070 1.137 sum 7.714 -18.644 1.733 20.251 Atomic orbital electron populations 1.70123 1.07969 1.27823 1.51464 1.26003 0.95723 1.03460 0.94610 0.85465 0.78219 0.77866 0.79265 1.18963 1.20908 1.19090 1.21580 0.93552 0.92100 1.50891 0.91912 1.18874 0.94295 0.92475 0.94598 1.21870 0.95343 0.88007 0.98787 1.60326 1.23546 1.00957 1.46689 1.20485 0.94460 0.88791 0.92664 0.90005 1.21284 0.90316 0.94012 0.94534 1.22190 1.02348 1.00668 0.95052 1.21923 0.95788 0.93722 0.98890 1.22443 0.96060 1.02138 0.99247 1.23212 1.00204 0.93814 0.90500 1.67376 1.12739 1.07833 1.32887 1.23038 0.99281 0.98116 0.93583 1.22885 0.96751 0.99341 0.97217 1.22770 1.00830 0.96488 0.96474 1.22981 1.00009 0.97431 0.97865 0.92804 0.99372 0.99520 0.92611 0.95421 0.84193 0.84111 0.82104 0.81967 0.81282 0.89365 0.89599 0.91299 0.89569 0.90387 0.92186 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.04 1.95 5.27 29.85 0.16 2.10 16 10 C 0.09 3.83 5.28 86.30 0.46 4.28 16 11 N -0.69 -26.27 6.16 -495.44 -3.05 -29.32 16 12 C 0.15 4.46 2.23 44.17 0.10 4.56 16 13 H 0.08 2.40 7.07 -2.39 -0.02 2.38 16 14 C 0.14 4.08 5.71 42.55 0.24 4.33 16 15 C -0.18 -4.53 9.71 22.36 0.22 -4.31 16 16 C -0.08 -1.53 10.18 22.47 0.23 -1.30 16 17 C -0.18 -3.43 10.11 22.36 0.23 -3.20 16 18 C 0.08 1.92 11.18 84.67 0.95 2.86 16 19 N -0.50 -15.30 9.89 -183.88 -1.82 -17.12 16 20 C -0.12 -3.16 2.80 -10.27 -0.03 -3.19 16 21 C -0.12 -2.59 7.62 31.18 0.24 -2.35 16 22 C -0.13 -2.57 8.09 31.18 0.25 -2.31 16 23 C -0.15 -3.72 6.99 31.12 0.22 -3.51 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.06 2.39 8.01 -2.38 -0.02 2.37 16 28 H 0.03 1.14 6.67 -2.39 -0.02 1.12 16 29 H 0.34 13.25 8.11 -89.69 -0.73 12.52 16 30 H 0.14 3.01 7.95 -2.91 -0.02 2.99 16 31 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.09 2.54 7.90 -2.38 -0.02 2.52 16 35 H 0.09 1.68 7.99 -2.39 -0.02 1.66 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 2.04 6.91 -2.39 -0.02 2.03 16 Total: -1.00 -69.60 329.62 1.67 -67.93 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.28 Total: 22.84 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 3.95 Total: -32.94 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.58 Total: -104.69 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -69.60 1.67 -67.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599568683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.835 kcal (2) G-P(sol) polarization free energy of solvation -69.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds