Wall clock time and date at job start Mon Mar 30 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.46852 * 110.99931 * 294.20338 * 11 10 9 13 13 C 1.53038 * 109.52166 * 174.16462 * 12 11 10 14 14 C 1.53111 * 109.27933 * 59.17985 * 13 12 11 15 15 C 1.50701 * 109.52668 * 182.44026 * 14 13 12 16 16 C 1.38678 * 120.41860 * 239.41381 * 15 14 13 17 17 C 1.38625 * 118.41748 * 179.77908 * 16 15 14 18 18 C 1.38229 * 119.16397 * 0.51281 * 17 16 15 19 19 N 1.31862 * 120.75941 * 359.71958 * 18 17 16 20 20 C 1.31877 * 121.72660 * 0.02562 * 19 18 17 21 21 C 1.53113 * 109.16361 * 302.34846 * 14 13 12 22 22 C 1.46845 * 110.99560 * 170.00278 * 11 10 9 23 23 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.08996 * 109.46717 * 294.18527 * 12 11 10 29 29 H 1.09002 * 109.45810 * 54.15580 * 12 11 10 30 30 H 1.09009 * 109.50306 * 299.24202 * 13 12 11 31 31 H 1.08993 * 109.53683 * 179.14554 * 13 12 11 32 32 H 1.09006 * 109.57061 * 62.28360 * 14 13 12 33 33 H 1.07999 * 120.79222 * 0.02562 * 16 15 14 34 34 H 1.08005 * 120.42170 * 180.21077 * 17 16 15 35 35 H 1.08002 * 119.62137 * 179.75038 * 18 17 16 36 36 H 1.08001 * 119.61704 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.50089 * 297.70933 * 21 14 13 38 38 H 1.09004 * 109.53483 * 177.61327 * 21 14 13 39 39 H 1.09000 * 109.46228 * 305.85144 * 22 11 10 40 40 H 1.09001 * 109.47085 * 65.82947 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4905 -2.6365 0.0001 12 6 6.0168 -2.0745 -1.2504 13 6 7.5397 -1.9557 -1.1566 14 6 8.1403 -3.3415 -0.9055 15 6 9.6348 -3.2226 -0.7526 16 6 10.4849 -3.9028 -1.6116 17 6 11.8526 -3.7600 -1.4363 18 6 12.3203 -2.9587 -0.4117 19 7 11.4822 -2.3304 0.3894 20 6 10.1755 -2.4391 0.2490 21 6 7.5396 -3.9249 0.3764 22 6 6.0167 -3.9866 0.2382 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6796 0.8894 25 1 3.8746 -0.6807 -0.8905 26 1 3.6585 -3.1502 0.8903 27 1 3.6578 -3.1505 -0.8897 28 1 5.7540 -2.7287 -2.0816 29 1 5.5850 -1.0872 -1.4148 30 1 7.8029 -1.2905 -0.3341 31 1 7.9320 -1.5528 -2.0903 32 1 7.9112 -3.9966 -1.7461 33 1 10.0907 -4.5257 -2.4009 34 1 12.5440 -4.2723 -2.0889 35 1 13.3844 -2.8454 -0.2659 36 1 9.5202 -1.9096 0.9249 37 1 7.8029 -3.2907 1.2229 38 1 7.9314 -4.9291 0.5383 39 1 5.5849 -4.3882 1.1549 40 1 5.7541 -4.6320 -0.6000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611258655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:35 Heat of formation + Delta-G solvation = 1.981297 kcal Electronic energy + Delta-G solvation = -19033.684506 eV Core-core repulsion = 16232.552934 eV Total energy + Delta-G solvation = -2801.131572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36133 -39.77211 -36.36654 -34.84948 -33.21031 -32.39486 -31.75700 -30.47088 -26.95584 -25.00618 -24.50043 -24.12702 -22.77299 -21.66355 -20.52952 -19.03631 -18.03256 -17.17470 -16.82585 -16.40113 -16.03201 -15.77385 -15.32012 -15.03882 -14.96547 -14.67976 -14.36870 -14.19259 -14.15141 -13.90008 -13.34462 -13.12010 -12.96884 -12.77024 -12.18144 -12.09650 -11.99147 -11.81894 -11.60777 -11.52286 -11.29889 -11.12006 -10.75036 -10.64559 -10.31592 -9.80934 -9.17596 -8.30425 -6.34403 0.21697 0.39882 1.35301 1.38227 1.51242 2.36198 2.89954 3.03655 3.05399 3.50161 3.74366 3.78640 3.94763 4.09378 4.13094 4.22718 4.25449 4.35803 4.41189 4.48706 4.57500 4.61204 4.70531 4.76814 4.82623 4.92860 4.96517 5.01307 5.04068 5.13043 5.19970 5.24041 5.30674 5.32605 5.47856 5.55320 5.64029 5.84533 6.15967 6.28604 6.35150 6.73617 7.08516 7.30487 8.86339 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037085 B = 0.003870 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.850526 B = 7233.923752 C = 7638.651968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.000 4.000 10 C 0.083 3.917 11 N -0.548 5.548 12 C 0.051 3.949 13 C -0.100 4.100 14 C -0.037 4.037 15 C -0.124 4.124 16 C -0.079 4.079 17 C -0.166 4.166 18 C 0.075 3.925 19 N -0.515 5.515 20 C 0.088 3.912 21 C -0.099 4.099 22 C 0.054 3.946 23 H 0.267 0.733 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.753 -8.838 -4.315 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.571 4.571 8 H 0.051 0.949 9 C -0.037 4.037 10 C -0.045 4.045 11 N -0.273 5.273 12 C -0.077 4.077 13 C -0.137 4.137 14 C -0.056 4.056 15 C -0.126 4.126 16 C -0.105 4.105 17 C -0.185 4.185 18 C -0.081 4.081 19 N -0.224 5.224 20 C -0.068 4.068 21 C -0.136 4.136 22 C -0.074 4.074 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.167 0.833 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 26.109 -7.918 -3.252 27.476 hybrid contribution -1.210 -0.229 -1.185 1.709 sum 24.899 -8.147 -4.438 26.571 Atomic orbital electron populations 1.70062 1.08263 1.28202 1.52643 1.25969 0.95582 1.03446 0.94039 0.85654 0.79487 0.78265 0.79249 1.19028 1.20886 1.17252 1.21435 0.92007 0.93184 1.50505 0.94935 1.19440 0.93251 0.94467 0.96570 1.21794 0.85974 0.97524 0.99181 1.61969 1.07273 1.22675 1.35391 1.22143 0.95825 0.99784 0.89928 1.21606 0.92960 0.96717 1.02461 1.20111 0.89101 0.97286 0.99085 1.20867 0.96590 0.98299 0.96818 1.21875 0.93491 0.97056 0.98060 1.22469 0.96487 0.99997 0.99595 1.23237 1.00644 0.92941 0.91313 1.67688 1.04692 1.22016 1.28012 1.22711 0.91241 0.96324 0.96574 1.21603 0.93108 1.01641 0.97288 1.22133 0.95892 0.88574 1.00763 0.92438 0.96183 0.96401 0.92061 0.96402 0.94892 0.91736 0.91550 0.90510 0.89393 0.82773 0.81858 0.80847 0.83293 0.91468 0.90013 0.90789 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 2 C 0.01 0.39 5.47 84.65 0.46 0.85 16 3 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.53 -31.29 9.66 25.60 0.25 -31.05 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 9 C 0.00 0.02 3.97 29.85 0.12 0.14 16 10 C 0.08 3.34 4.90 86.31 0.42 3.77 16 11 N -0.55 -17.81 4.66 -896.33 -4.17 -21.98 16 12 C 0.05 1.49 5.29 86.33 0.46 1.94 16 13 C -0.10 -2.25 5.23 30.64 0.16 -2.09 16 14 C -0.04 -0.69 2.45 -11.46 -0.03 -0.72 16 15 C -0.12 -2.25 4.80 -19.77 -0.09 -2.35 16 16 C -0.08 -1.13 9.81 22.47 0.22 -0.91 16 17 C -0.17 -2.12 10.11 22.36 0.23 -1.89 16 18 C 0.08 1.23 11.18 84.69 0.95 2.18 16 19 N -0.52 -11.60 10.36 -195.84 -2.03 -13.63 16 20 C 0.09 1.89 9.85 84.67 0.83 2.72 16 21 C -0.10 -2.00 5.23 30.65 0.16 -1.84 16 22 C 0.05 1.38 5.46 86.33 0.47 1.85 16 23 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 24 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 25 H 0.02 0.83 5.86 -2.39 -0.01 0.82 16 26 H 0.06 2.51 7.99 -2.39 -0.02 2.49 16 27 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 2.12 6.21 -2.39 -0.01 2.11 16 30 H 0.07 1.61 7.33 -2.38 -0.02 1.59 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.47 7.93 -2.38 -0.02 1.46 16 33 H 0.15 1.48 8.01 -2.91 -0.02 1.45 16 34 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.15 3.21 7.08 -2.91 -0.02 3.19 16 37 H 0.07 1.48 7.34 -2.39 -0.02 1.46 16 38 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.07 1.89 8.01 -2.39 -0.02 1.87 16 40 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -69.29 316.67 1.53 -67.76 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.94 Total: 8.26 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.61 Total: -27.40 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -5.90 Total: -95.71 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -69.29 1.53 -67.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611258655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.743 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds