Wall clock time and date at job start Mon Mar 30 2020 06:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.64459 * 36.70199 * 12 11 10 14 14 C 1.54596 * 110.72455 * 273.55126 * 12 11 10 15 15 C 1.53998 * 105.13884 * 219.68598 * 14 12 11 16 16 N 1.47896 * 107.06144 * 358.77283 * 15 14 12 17 17 C 1.39674 * 111.00413 * 145.84640 * 16 15 14 18 18 C 1.38910 * 120.07409 * 119.84663 * 17 16 15 19 19 C 1.38102 * 119.92023 * 179.76667 * 18 17 16 20 20 C 1.38284 * 120.07528 * 0.51709 * 19 18 17 21 21 C 1.38282 * 120.15278 * 359.73577 * 20 19 18 22 22 C 1.38103 * 120.07124 * 0.02562 * 21 20 19 23 23 C 1.48534 * 105.81795 * 25.33242 * 16 15 14 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.00904 * 111.00404 * 303.96127 * 11 10 9 30 30 H 1.09001 * 110.30954 * 338.59669 * 14 12 11 31 31 H 1.09000 * 110.31511 * 100.76754 * 14 12 11 32 32 H 1.09001 * 109.92029 * 118.12955 * 15 14 12 33 33 H 1.09002 * 109.91600 * 239.41881 * 15 14 12 34 34 H 1.07999 * 120.03850 * 0.02562 * 18 17 16 35 35 H 1.08003 * 119.96448 * 180.25273 * 19 18 17 36 36 H 1.08006 * 119.92491 * 179.71932 * 20 19 18 37 37 H 1.07998 * 119.96670 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.03403 * 179.97438 * 22 21 20 39 39 H 1.09005 * 110.66831 * 202.36442 * 23 16 15 40 40 H 1.09000 * 110.66949 * 79.22876 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 1 3.3130 -5.8566 0.6308 14 6 2.8493 -6.4516 -1.4190 15 6 2.8746 -7.9912 -1.4415 16 7 2.5252 -8.4509 -0.0799 17 6 1.7954 -9.6410 -0.1252 18 6 2.2876 -10.7834 0.4931 19 6 1.5611 -11.9571 0.4505 20 6 0.3501 -11.9987 -0.2158 21 6 -0.1403 -10.8647 -0.8368 22 6 0.5787 -9.6864 -0.7939 23 6 1.7221 -7.3567 0.5232 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 2.8721 -3.6081 -0.8798 28 1 2.8721 -3.6002 0.9002 29 1 0.8749 -4.9806 0.7986 30 1 2.1172 -6.0749 -2.1332 31 1 3.8387 -6.0537 -1.6447 32 1 2.1432 -8.3642 -2.1585 33 1 3.8716 -8.3424 -1.7076 34 1 3.2353 -10.7526 1.0101 35 1 1.9412 -12.8446 0.9344 36 1 -0.2139 -12.9191 -0.2515 37 1 -1.0863 -10.9007 -1.3567 38 1 0.1953 -8.8011 -1.2795 39 1 1.7514 -7.4127 1.6114 40 1 0.6940 -7.3903 0.1628 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612194935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:17 Heat of formation + Delta-G solvation = 29.766199 kcal Electronic energy + Delta-G solvation = -18612.338738 eV Core-core repulsion = 15812.412010 eV Total energy + Delta-G solvation = -2799.926728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33446 -38.07793 -35.42864 -33.07607 -31.62605 -31.08669 -29.50450 -28.60780 -26.90399 -23.86868 -23.17048 -22.45863 -20.95278 -20.33000 -20.04975 -17.53095 -16.35722 -16.23835 -15.86994 -15.07681 -14.89517 -14.41785 -14.30733 -14.10613 -13.62510 -13.39934 -13.16617 -12.94898 -12.36107 -12.19076 -11.99570 -11.64044 -11.45739 -11.34095 -11.23470 -10.94734 -10.87090 -10.60104 -10.53456 -9.97481 -9.38115 -9.17089 -9.11306 -8.79461 -8.67943 -8.35547 -7.88637 -5.99944 -4.02683 1.09600 1.22215 3.33485 3.37766 3.40151 3.55301 3.73238 4.44012 4.62523 4.74602 4.78418 4.80887 4.90473 4.94249 5.15835 5.24908 5.33348 5.35947 5.36161 5.51282 5.62306 5.70965 5.84535 5.90353 5.93798 6.16140 6.19735 6.19835 6.32524 6.32668 6.36499 6.45104 6.64601 6.65565 6.97365 7.28210 7.47850 7.71551 7.80987 7.93489 8.07288 8.43016 9.04384 9.61140 11.11472 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.051834 B = 0.003070 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.056134 B = 9118.969112 C = 9347.870220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.067 3.933 11 N -0.684 5.684 12 C 0.083 3.917 13 H 0.055 0.945 14 C -0.122 4.122 15 C 0.042 3.958 16 N -0.486 5.486 17 C 0.086 3.914 18 C -0.097 4.097 19 C -0.117 4.117 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.148 4.148 23 C 0.039 3.961 24 H 0.261 0.739 25 H 0.013 0.987 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.016 0.984 29 H 0.337 0.663 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.580 -23.123 -0.614 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.315 5.315 12 C -0.028 4.028 13 H 0.073 0.927 14 C -0.161 4.161 15 C -0.084 4.084 16 N -0.207 5.207 17 C -0.008 4.008 18 C -0.116 4.116 19 C -0.136 4.136 20 C -0.146 4.146 21 C -0.130 4.130 22 C -0.168 4.168 23 C -0.087 4.087 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.827 -23.093 -0.996 23.287 hybrid contribution 0.023 1.131 0.438 1.213 sum 2.850 -21.962 -0.558 22.153 Atomic orbital electron populations 1.69959 1.06038 1.26722 1.50573 1.25000 0.94845 0.99219 0.95280 0.86645 0.79564 0.83092 0.78610 1.20206 1.21267 1.20281 1.21140 0.92958 0.91028 1.51004 0.92803 1.19064 0.94002 0.90426 0.97675 1.22194 0.96955 0.88236 0.98729 1.60683 1.19415 1.01942 1.49468 1.22378 0.94776 0.90051 0.95623 0.92742 1.22476 1.02335 0.93306 0.97969 1.22982 1.01300 0.95665 0.88465 1.62404 1.38524 1.01226 1.18558 1.19094 0.92148 0.92047 0.97543 1.21035 1.00111 0.91409 0.99067 1.21104 0.95107 0.97806 0.99537 1.21165 0.96500 0.98357 0.98545 1.21047 0.99716 0.92760 0.99496 1.21756 0.95873 0.98750 1.00453 1.23463 0.96103 0.89343 0.99806 0.92924 0.96827 0.95707 0.92284 0.96532 0.84467 0.89905 0.91237 0.93202 0.90338 0.85436 0.85887 0.86177 0.86112 0.85887 0.90078 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.41 5.48 -3.83 -0.02 1.38 16 11 N -0.68 -11.99 6.31 -104.76 -0.66 -12.66 16 12 C 0.08 1.22 3.35 -65.85 -0.22 1.00 16 13 H 0.05 0.84 7.89 -51.93 -0.41 0.43 16 14 C -0.12 -1.65 6.61 -25.37 -0.17 -1.82 16 15 C 0.04 0.51 6.51 -2.76 -0.02 0.49 16 16 N -0.49 -6.07 5.28 -167.16 -0.88 -6.95 16 17 C 0.09 1.01 4.85 -83.79 -0.41 0.61 16 18 C -0.10 -1.02 9.97 -39.38 -0.39 -1.41 16 19 C -0.12 -1.04 10.04 -39.61 -0.40 -1.44 16 20 C -0.13 -1.12 10.04 -39.55 -0.40 -1.51 16 21 C -0.11 -1.07 10.04 -39.61 -0.40 -1.47 16 22 C -0.15 -1.66 7.90 -39.38 -0.31 -1.97 16 23 C 0.04 0.51 5.84 -1.89 -0.01 0.50 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 28 H 0.02 0.34 8.08 -51.93 -0.42 -0.07 16 29 H 0.34 5.72 8.50 -39.29 -0.33 5.38 16 30 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.58 6.68 -51.93 -0.35 0.23 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.39 7.05 -52.48 -0.37 1.02 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.82 6.65 -51.93 -0.35 0.47 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -30.22 326.19 -10.62 -40.85 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.41 Total: 2.16 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -3.30 Total: -18.75 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.81 Total: -45.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.22 -10.62 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612194935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.612 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds