Wall clock time and date at job start Mon Mar 30 2020 06:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.64459 * 36.70199 * 12 11 10 14 14 C 1.54596 * 110.72455 * 273.55126 * 12 11 10 15 15 C 1.53998 * 105.13884 * 219.68598 * 14 12 11 16 16 N 1.47896 * 107.06144 * 358.77283 * 15 14 12 17 17 C 1.39674 * 111.00413 * 145.84640 * 16 15 14 18 18 C 1.38910 * 120.07409 * 119.84663 * 17 16 15 19 19 C 1.38102 * 119.92023 * 179.76667 * 18 17 16 20 20 C 1.38284 * 120.07528 * 0.51709 * 19 18 17 21 21 C 1.38282 * 120.15278 * 359.73577 * 20 19 18 22 22 C 1.38103 * 120.07124 * 0.02562 * 21 20 19 23 23 C 1.48534 * 105.81795 * 25.33242 * 16 15 14 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.00904 * 111.00404 * 303.96127 * 11 10 9 30 30 H 1.09001 * 110.30954 * 338.59669 * 14 12 11 31 31 H 1.09000 * 110.31511 * 100.76754 * 14 12 11 32 32 H 1.09001 * 109.92029 * 118.12955 * 15 14 12 33 33 H 1.09002 * 109.91600 * 239.41881 * 15 14 12 34 34 H 1.07999 * 120.03850 * 0.02562 * 18 17 16 35 35 H 1.08003 * 119.96448 * 180.25273 * 19 18 17 36 36 H 1.08006 * 119.92491 * 179.71932 * 20 19 18 37 37 H 1.07998 * 119.96670 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.03403 * 179.97438 * 22 21 20 39 39 H 1.09005 * 110.66831 * 202.36442 * 23 16 15 40 40 H 1.09000 * 110.66949 * 79.22876 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 1 3.3130 -5.8566 0.6308 14 6 2.8493 -6.4516 -1.4190 15 6 2.8746 -7.9912 -1.4415 16 7 2.5252 -8.4509 -0.0799 17 6 1.7954 -9.6410 -0.1252 18 6 2.2876 -10.7834 0.4931 19 6 1.5611 -11.9571 0.4505 20 6 0.3501 -11.9987 -0.2158 21 6 -0.1403 -10.8647 -0.8368 22 6 0.5787 -9.6864 -0.7939 23 6 1.7221 -7.3567 0.5232 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 2.8721 -3.6081 -0.8798 28 1 2.8721 -3.6002 0.9002 29 1 0.8749 -4.9806 0.7986 30 1 2.1172 -6.0749 -2.1332 31 1 3.8387 -6.0537 -1.6447 32 1 2.1432 -8.3642 -2.1585 33 1 3.8716 -8.3424 -1.7076 34 1 3.2353 -10.7526 1.0101 35 1 1.9412 -12.8446 0.9344 36 1 -0.2139 -12.9191 -0.2515 37 1 -1.0863 -10.9007 -1.3567 38 1 0.1953 -8.8011 -1.2795 39 1 1.7514 -7.4127 1.6114 40 1 0.6940 -7.3903 0.1628 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612194935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:17 Heat of formation + Delta-G solvation = 11.063852 kcal Electronic energy + Delta-G solvation = -18613.149733 eV Core-core repulsion = 15812.412010 eV Total energy + Delta-G solvation = -2800.737723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24337 -39.04628 -36.89236 -35.00557 -32.93451 -31.83320 -31.06320 -29.61429 -28.29165 -25.77589 -24.05796 -23.27104 -22.52115 -21.57947 -21.20633 -18.61792 -18.24188 -17.30052 -16.88002 -16.55420 -16.13194 -15.93890 -15.34241 -15.14466 -14.79817 -14.58374 -14.33155 -14.18962 -14.01062 -13.37219 -13.18745 -13.10297 -12.83799 -12.68379 -12.37713 -12.28552 -12.22663 -12.07709 -11.96595 -11.62117 -11.39993 -11.25189 -10.56642 -9.85982 -9.64254 -9.58609 -9.36353 -8.20904 -6.32565 0.32916 0.47674 1.40125 1.43370 1.51302 2.39875 2.73032 2.81011 3.12519 3.45336 3.55171 3.81239 4.02250 4.08021 4.12584 4.24396 4.27332 4.41125 4.50988 4.55628 4.56976 4.61503 4.70172 4.81050 4.86193 4.87924 5.04075 5.07675 5.14418 5.14846 5.43115 5.48064 5.57105 5.59546 5.60953 5.66501 5.79033 5.91532 6.12423 6.26146 6.41441 6.49672 6.84493 7.36780 8.91080 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.051834 B = 0.003070 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.056134 B = 9118.969112 C = 9347.870220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.087 3.913 11 N -0.686 5.686 12 C 0.082 3.918 13 H 0.052 0.948 14 C -0.119 4.119 15 C 0.048 3.952 16 N -0.486 5.486 17 C 0.063 3.937 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.118 4.118 22 C -0.162 4.162 23 C 0.048 3.952 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.006 1.006 27 H 0.058 0.942 28 H 0.019 0.981 29 H 0.340 0.660 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -24.463 -0.436 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.318 5.318 12 C -0.028 4.028 13 H 0.070 0.930 14 C -0.158 4.158 15 C -0.078 4.078 16 N -0.208 5.208 17 C -0.031 4.031 18 C -0.126 4.126 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.182 4.182 23 C -0.079 4.079 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.013 0.987 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.158 0.842 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.150 0.850 35 H 0.168 0.832 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.827 -24.460 -0.819 24.771 hybrid contribution -0.342 1.441 0.382 1.530 sum 3.485 -23.018 -0.437 23.285 Atomic orbital electron populations 1.70097 1.07829 1.27901 1.51352 1.25976 0.95771 1.03387 0.94591 0.85480 0.78255 0.77958 0.79221 1.19127 1.20782 1.19121 1.21589 0.93550 0.92274 1.51051 0.92143 1.18910 0.94269 0.92232 0.95054 1.21792 0.95535 0.88104 0.98762 1.60585 1.19828 1.01541 1.49815 1.22406 0.94216 0.89556 0.96623 0.92973 1.22434 1.02076 0.94609 0.96692 1.22942 1.02018 0.94273 0.88587 1.62414 1.38502 1.01297 1.18555 1.19218 0.92737 0.92089 0.99015 1.21210 1.00648 0.91627 0.99105 1.21443 0.94872 0.98090 0.98954 1.21531 0.96490 0.98989 0.97344 1.21315 1.00250 0.92550 0.99574 1.21766 0.96190 0.99224 1.01064 1.23333 0.95719 0.88800 1.00033 0.92711 0.99016 0.98747 0.92330 0.96274 0.84157 0.91259 0.90758 0.93044 0.89172 0.84954 0.83245 0.83481 0.84539 0.86852 0.89657 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.49 9.11 25.60 0.23 -31.25 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.77 5.23 29.85 0.16 1.92 16 10 C 0.09 3.69 5.48 86.31 0.47 4.17 16 11 N -0.69 -24.44 6.31 -485.36 -3.06 -27.50 16 12 C 0.08 2.41 3.35 46.12 0.15 2.57 16 13 H 0.05 1.58 7.89 -2.39 -0.02 1.56 16 14 C -0.12 -3.20 6.61 31.47 0.21 -2.99 16 15 C 0.05 1.12 6.51 86.45 0.56 1.69 16 16 N -0.49 -11.81 5.28 -682.76 -3.60 -15.41 16 17 C 0.06 1.44 4.85 38.21 0.19 1.62 16 18 C -0.11 -2.08 9.97 22.40 0.22 -1.85 16 19 C -0.12 -1.75 10.04 22.25 0.22 -1.53 16 20 C -0.13 -1.86 10.04 22.29 0.22 -1.63 16 21 C -0.12 -2.08 10.04 22.25 0.22 -1.86 16 22 C -0.16 -3.53 7.90 22.40 0.18 -3.35 16 23 C 0.05 1.24 5.84 86.65 0.51 1.75 16 24 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 27 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 28 H 0.02 0.80 8.08 -2.38 -0.02 0.78 16 29 H 0.34 11.77 8.50 -89.69 -0.76 11.01 16 30 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.18 6.68 -2.39 -0.02 1.16 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.11 2.60 7.05 -2.91 -0.02 2.57 16 39 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.06 1.51 6.65 -2.39 -0.02 1.49 16 Total: -1.00 -64.92 326.19 -0.09 -65.02 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.25 Total: 18.68 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 4.01 Total: -30.25 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -6.38 Total: -99.97 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.92 -0.09 -65.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612194935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.081 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds