Wall clock time and date at job start Mon Mar 30 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99883 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.29125 * 324.32539 * 12 11 10 14 14 C 1.54254 * 110.32413 * 86.45531 * 12 11 10 15 15 C 1.54384 * 105.06289 * 118.89615 * 14 12 11 16 16 N 1.48558 * 104.59416 * 23.84968 * 15 14 12 17 17 C 1.39677 * 110.99772 * 200.96399 * 16 15 14 18 18 C 1.38917 * 120.06977 * 239.59635 * 17 16 15 19 19 C 1.38100 * 119.92003 * 179.76930 * 18 17 16 20 20 C 1.38291 * 120.07637 * 0.51221 * 19 18 17 21 21 C 1.38279 * 120.14971 * 359.74028 * 20 19 18 22 22 C 1.38105 * 120.07340 * 0.02562 * 21 20 19 23 23 C 1.48559 * 104.22284 * 320.52043 * 16 15 14 24 24 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 26 26 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 27 27 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 28 28 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 29 29 H 1.00896 * 111.00032 * 303.95295 * 11 10 9 30 30 H 1.09001 * 110.32618 * 237.78747 * 14 12 11 31 31 H 1.09002 * 110.32836 * 359.97438 * 14 12 11 32 32 H 1.08997 * 110.41344 * 142.63254 * 15 14 12 33 33 H 1.09005 * 110.40870 * 265.07014 * 15 14 12 34 34 H 1.07995 * 120.03880 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.96223 * 180.25225 * 19 18 17 36 36 H 1.08003 * 119.92207 * 179.76884 * 20 19 18 37 37 H 1.08003 * 119.96891 * 180.02562 * 21 20 19 38 38 H 1.08009 * 120.03832 * 180.02562 * 22 21 20 39 39 H 1.09003 * 110.41396 * 280.70394 * 23 16 15 40 40 H 1.09004 * 110.41206 * 158.26171 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4904 -2.6368 0.0022 12 6 6.0167 -4.0082 0.0027 13 1 5.3763 -4.6587 0.5985 14 6 6.1263 -4.5406 -1.4409 15 6 7.6274 -4.8375 -1.6461 16 7 8.1579 -5.0496 -0.2748 17 6 9.5416 -4.8622 -0.2389 18 6 10.3742 -5.8986 0.1642 19 6 11.7421 -5.7114 0.1940 20 6 12.2826 -4.4907 -0.1668 21 6 11.4563 -3.4553 -0.5635 22 6 10.0878 -3.6372 -0.6002 23 6 7.4608 -4.0282 0.5483 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6806 -0.8889 26 1 3.8745 -0.6801 0.8911 27 1 3.6577 -3.1507 0.8908 28 1 3.6583 -3.1503 -0.8892 29 1 5.8526 -2.1104 -0.7787 30 1 5.5412 -5.4533 -1.5533 31 1 5.7892 -3.7845 -2.1500 32 1 7.7583 -5.7368 -2.2478 33 1 8.1218 -3.9882 -2.1179 34 1 9.9524 -6.8508 0.4500 35 1 12.3902 -6.5180 0.5033 36 1 13.3525 -4.3459 -0.1390 37 1 11.8816 -2.5033 -0.8450 38 1 9.4430 -2.8282 -0.9106 39 1 7.9291 -3.0522 0.4201 40 1 7.4662 -4.3183 1.5990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612194936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:20 Heat of formation + Delta-G solvation = 33.751129 kcal Electronic energy + Delta-G solvation = -18717.537036 eV Core-core repulsion = 15917.783108 eV Total energy + Delta-G solvation = -2799.753929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39631 -38.21946 -35.55016 -33.08222 -31.68514 -31.12966 -29.74232 -28.71221 -27.14854 -23.81609 -23.26044 -22.44994 -20.84948 -20.56162 -20.15338 -17.60646 -16.82388 -16.30111 -15.82510 -15.13165 -14.81189 -14.42367 -14.25183 -14.13404 -13.67233 -13.36436 -13.28554 -13.01361 -12.49938 -12.28870 -12.19322 -11.89857 -11.58744 -11.39097 -11.35603 -11.31556 -11.00066 -10.70437 -10.10096 -9.89110 -9.74453 -9.23996 -9.14666 -8.84705 -8.75335 -8.54523 -7.97556 -6.05138 -4.03583 1.06244 1.19019 3.31080 3.38893 3.44615 3.51872 3.72104 4.45518 4.55274 4.61609 4.73145 4.75122 4.88498 4.90666 5.00303 5.21777 5.29176 5.30878 5.31072 5.47889 5.50469 5.66099 5.74016 5.83108 5.87919 5.98885 6.05631 6.16875 6.18913 6.27440 6.29474 6.33017 6.50963 6.62230 6.75176 7.12415 7.24771 7.35523 7.59158 7.72478 7.87283 8.52265 8.99035 9.57199 11.08226 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038022 B = 0.003452 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.243965 B = 8110.407836 C = 8572.062107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.687 5.687 12 C 0.085 3.915 13 H 0.089 0.911 14 C -0.155 4.155 15 C 0.040 3.960 16 N -0.482 5.482 17 C 0.085 3.915 18 C -0.097 4.097 19 C -0.117 4.117 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.149 4.149 23 C 0.047 3.953 24 H 0.263 0.737 25 H 0.008 0.992 26 H 0.025 0.975 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.335 0.665 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.058 0.942 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.607 -10.442 -2.116 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.318 5.318 12 C -0.027 4.027 13 H 0.107 0.893 14 C -0.195 4.195 15 C -0.086 4.086 16 N -0.203 5.203 17 C -0.010 4.010 18 C -0.116 4.116 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.130 4.130 22 C -0.169 4.169 23 C -0.080 4.080 24 H 0.073 0.927 25 H 0.026 0.974 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.153 0.847 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.076 0.924 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.358 -10.792 -1.223 25.759 hybrid contribution 0.309 1.481 -1.277 1.979 sum 23.667 -9.311 -2.500 25.555 Atomic orbital electron populations 1.69918 1.06328 1.26926 1.51095 1.25012 0.94735 0.99219 0.94484 0.86747 0.80498 0.83453 0.78422 1.20430 1.21411 1.18779 1.21070 0.89368 0.94524 1.51028 0.91087 1.19552 0.96707 0.91858 0.96664 1.21979 0.83706 1.00043 0.99632 1.60621 1.10197 1.11347 1.49592 1.22279 0.95127 0.90901 0.94367 0.89315 1.23120 0.95448 1.02332 0.98601 1.23160 0.95005 1.00723 0.89725 1.63114 1.01281 1.47390 1.08530 1.19092 0.89939 0.93037 0.98899 1.21031 0.92623 0.98802 0.99099 1.21112 0.94883 0.97451 1.00065 1.21167 0.99742 0.93529 1.00116 1.21040 0.93298 0.99036 0.99635 1.21715 0.95936 0.97892 1.01370 1.23253 0.93399 0.93307 0.98031 0.92718 0.97401 0.95669 0.91604 0.95823 0.84721 0.90701 0.90846 0.90138 0.93394 0.85387 0.85854 0.86162 0.86142 0.86037 0.92377 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.47 5.46 -3.83 -0.02 1.45 16 11 N -0.69 -11.20 6.23 -105.27 -0.66 -11.85 16 12 C 0.08 1.16 3.36 -66.33 -0.22 0.94 16 13 H 0.09 1.28 7.86 -51.93 -0.41 0.87 16 14 C -0.16 -1.88 6.58 -25.35 -0.17 -2.05 16 15 C 0.04 0.45 6.36 -2.18 -0.01 0.44 16 16 N -0.48 -5.74 5.39 -166.70 -0.90 -6.64 16 17 C 0.08 0.96 4.90 -83.79 -0.41 0.55 16 18 C -0.10 -0.99 9.97 -39.38 -0.39 -1.38 16 19 C -0.12 -1.01 10.04 -39.61 -0.40 -1.41 16 20 C -0.13 -1.09 10.04 -39.55 -0.40 -1.48 16 21 C -0.11 -1.04 10.04 -39.62 -0.40 -1.44 16 22 C -0.15 -1.60 8.05 -39.38 -0.32 -1.92 16 23 C 0.05 0.59 6.06 -2.18 -0.01 0.58 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 25 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 26 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 27 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 28 H 0.02 0.47 8.11 -51.93 -0.42 0.04 16 29 H 0.33 5.17 8.23 -39.29 -0.32 4.84 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.52 6.77 -51.93 -0.35 0.17 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 1.29 6.74 -52.48 -0.35 0.94 16 39 H 0.06 0.76 6.41 -51.93 -0.33 0.42 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 321.64 15.07 4.85 4.85 Total: -1.00 -30.65 321.64 -10.22 -40.88 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.32 Total: 2.27 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -3.30 Total: -19.47 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.78 Total: -45.74 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.65 -10.22 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612194936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.627 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds