Wall clock time and date at job start Mon Mar 30 2020 06:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99883 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.29125 * 324.32539 * 12 11 10 14 14 C 1.54254 * 110.32413 * 86.45531 * 12 11 10 15 15 C 1.54384 * 105.06289 * 118.89615 * 14 12 11 16 16 N 1.48558 * 104.59416 * 23.84968 * 15 14 12 17 17 C 1.39677 * 110.99772 * 200.96399 * 16 15 14 18 18 C 1.38917 * 120.06977 * 239.59635 * 17 16 15 19 19 C 1.38100 * 119.92003 * 179.76930 * 18 17 16 20 20 C 1.38291 * 120.07637 * 0.51221 * 19 18 17 21 21 C 1.38279 * 120.14971 * 359.74028 * 20 19 18 22 22 C 1.38105 * 120.07340 * 0.02562 * 21 20 19 23 23 C 1.48559 * 104.22284 * 320.52043 * 16 15 14 24 24 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 26 26 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 27 27 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 28 28 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 29 29 H 1.00896 * 111.00032 * 303.95295 * 11 10 9 30 30 H 1.09001 * 110.32618 * 237.78747 * 14 12 11 31 31 H 1.09002 * 110.32836 * 359.97438 * 14 12 11 32 32 H 1.08997 * 110.41344 * 142.63254 * 15 14 12 33 33 H 1.09005 * 110.40870 * 265.07014 * 15 14 12 34 34 H 1.07995 * 120.03880 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.96223 * 180.25225 * 19 18 17 36 36 H 1.08003 * 119.92207 * 179.76884 * 20 19 18 37 37 H 1.08003 * 119.96891 * 180.02562 * 21 20 19 38 38 H 1.08009 * 120.03832 * 180.02562 * 22 21 20 39 39 H 1.09003 * 110.41396 * 280.70394 * 23 16 15 40 40 H 1.09004 * 110.41206 * 158.26171 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4904 -2.6368 0.0022 12 6 6.0167 -4.0082 0.0027 13 1 5.3763 -4.6587 0.5985 14 6 6.1263 -4.5406 -1.4409 15 6 7.6274 -4.8375 -1.6461 16 7 8.1579 -5.0496 -0.2748 17 6 9.5416 -4.8622 -0.2389 18 6 10.3742 -5.8986 0.1642 19 6 11.7421 -5.7114 0.1940 20 6 12.2826 -4.4907 -0.1668 21 6 11.4563 -3.4553 -0.5635 22 6 10.0878 -3.6372 -0.6002 23 6 7.4608 -4.0282 0.5483 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6806 -0.8889 26 1 3.8745 -0.6801 0.8911 27 1 3.6577 -3.1507 0.8908 28 1 3.6583 -3.1503 -0.8892 29 1 5.8526 -2.1104 -0.7787 30 1 5.5412 -5.4533 -1.5533 31 1 5.7892 -3.7845 -2.1500 32 1 7.7583 -5.7368 -2.2478 33 1 8.1218 -3.9882 -2.1179 34 1 9.9524 -6.8508 0.4500 35 1 12.3902 -6.5180 0.5033 36 1 13.3525 -4.3459 -0.1390 37 1 11.8816 -2.5033 -0.8450 38 1 9.4430 -2.8282 -0.9106 39 1 7.9291 -3.0522 0.4201 40 1 7.4662 -4.3183 1.5990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612194936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:19 Heat of formation + Delta-G solvation = 13.976536 kcal Electronic energy + Delta-G solvation = -18718.394527 eV Core-core repulsion = 15917.783108 eV Total energy + Delta-G solvation = -2800.611419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26024 -39.13275 -36.89609 -34.97925 -33.08579 -31.83670 -31.20223 -29.65166 -28.40445 -25.59867 -24.09635 -23.21023 -22.35753 -21.57388 -21.42799 -18.99414 -18.37814 -17.27324 -16.73955 -16.36782 -16.19337 -15.69004 -15.41323 -15.29435 -14.85891 -14.60035 -14.40410 -14.26031 -13.93612 -13.58791 -13.25630 -13.06849 -12.93814 -12.71202 -12.53661 -12.21597 -12.09365 -11.91516 -11.76979 -11.75217 -11.55535 -11.42791 -10.77483 -9.85631 -9.68598 -9.56832 -9.32144 -8.30459 -6.35095 0.33419 0.48043 1.35965 1.38963 1.51790 2.36380 2.76342 2.82348 3.05214 3.37220 3.61362 3.82766 4.01736 4.03563 4.10242 4.27086 4.28824 4.38700 4.49240 4.55007 4.56487 4.57306 4.70360 4.78713 4.84637 4.89805 4.95520 4.98424 5.06992 5.14853 5.27583 5.47942 5.48413 5.55634 5.57083 5.61280 5.64653 5.91968 6.14070 6.24826 6.42390 6.50123 6.73716 7.29876 8.86301 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038022 B = 0.003452 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.243965 B = 8110.407836 C = 8572.062107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.534 4.534 8 H 0.032 0.968 9 C -0.004 4.004 10 C 0.089 3.911 11 N -0.685 5.685 12 C 0.084 3.916 13 H 0.080 0.920 14 C -0.150 4.150 15 C 0.045 3.955 16 N -0.484 5.484 17 C 0.063 3.937 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.162 4.162 23 C 0.055 3.945 24 H 0.267 0.733 25 H 0.019 0.981 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.021 0.979 29 H 0.342 0.658 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.055 0.945 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.668 -10.017 -2.434 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.042 4.042 10 C -0.039 4.039 11 N -0.316 5.316 12 C -0.027 4.027 13 H 0.098 0.902 14 C -0.189 4.189 15 C -0.081 4.081 16 N -0.205 5.205 17 C -0.031 4.031 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.182 4.182 23 C -0.072 4.072 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.161 0.839 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.135 0.865 39 H 0.074 0.926 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 26.446 -10.390 -1.547 28.456 hybrid contribution -0.624 1.244 -1.168 1.817 sum 25.821 -9.146 -2.715 27.528 Atomic orbital electron populations 1.70070 1.08331 1.28235 1.52553 1.26015 0.95627 1.03602 0.94001 0.85593 0.79424 0.78012 0.79202 1.19032 1.21025 1.17133 1.21418 0.91983 0.93208 1.50639 0.94973 1.19437 0.93507 0.94500 0.96750 1.21622 0.85968 0.97305 0.99050 1.60507 1.07740 1.13200 1.50160 1.22274 0.95529 0.89300 0.95551 0.90169 1.23039 0.96399 1.02279 0.97222 1.23141 0.94032 1.01281 0.89682 1.63097 1.01953 1.46860 1.08615 1.19223 0.89578 0.93900 1.00438 1.21205 0.93427 0.98759 0.99348 1.21436 0.94526 0.98343 0.99141 1.21528 1.01072 0.93047 0.98840 1.21319 0.92867 1.00171 0.99322 1.21764 0.96733 0.97621 1.02092 1.23101 0.92569 0.93575 0.97969 0.92437 0.96308 0.95969 0.92669 0.96121 0.83876 0.90431 0.90983 0.89270 0.93064 0.85083 0.83392 0.83580 0.84482 0.86476 0.92634 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 2 C 0.00 0.26 5.47 84.66 0.46 0.72 16 3 Si 0.95 44.74 27.47 68.60 1.88 46.62 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.53 -31.16 9.66 25.60 0.25 -30.91 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 9 C 0.00 -0.19 4.30 29.85 0.13 -0.07 16 10 C 0.09 3.53 5.46 86.30 0.47 4.00 16 11 N -0.69 -21.67 6.23 -486.95 -3.03 -24.71 16 12 C 0.08 2.26 3.36 45.81 0.15 2.42 16 13 H 0.08 2.29 7.86 -2.39 -0.02 2.28 16 14 C -0.15 -3.48 6.58 31.49 0.21 -3.27 16 15 C 0.04 0.95 6.36 86.45 0.55 1.50 16 16 N -0.48 -11.05 5.39 -681.31 -3.67 -14.72 16 17 C 0.06 1.35 4.90 38.21 0.19 1.54 16 18 C -0.11 -2.04 9.97 22.40 0.22 -1.82 16 19 C -0.12 -1.71 10.04 22.25 0.22 -1.49 16 20 C -0.13 -1.80 10.04 22.29 0.22 -1.57 16 21 C -0.12 -1.95 10.04 22.25 0.22 -1.73 16 22 C -0.16 -3.27 8.05 22.40 0.18 -3.09 16 23 C 0.05 1.35 6.06 86.45 0.52 1.87 16 24 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 25 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 26 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 27 H 0.05 2.28 8.07 -2.38 -0.02 2.26 16 28 H 0.02 0.82 8.11 -2.39 -0.02 0.80 16 29 H 0.34 10.04 8.23 -89.70 -0.74 9.30 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.70 7.64 -2.39 -0.02 1.69 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.05 6.77 -2.38 -0.02 1.03 16 34 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.12 2.38 6.74 -2.91 -0.02 2.36 16 39 H 0.06 1.40 6.41 -2.39 -0.02 1.38 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -66.15 321.64 -0.29 -66.44 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.22 Total: 18.20 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 4.01 Total: -31.91 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -6.40 Total: -99.36 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -66.15 -0.29 -66.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612194936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.421 kcal (2) G-P(sol) polarization free energy of solvation -66.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds