Wall clock time and date at job start Mon Mar 30 2020 07:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38676 * 120.41417 * 2 1 4 4 C 1.38634 * 118.41911 * 179.71455 * 3 2 1 5 5 C 1.38220 * 119.15878 * 0.50369 * 4 3 2 6 6 C 1.50704 * 119.61861 * 179.75685 * 5 4 3 7 7 C 1.53000 * 109.47288 * 124.73123 * 6 5 4 8 8 N 1.46900 * 109.47146 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99720 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46879 * 174.70052 * 9 8 7 11 11 C 1.50702 * 115.55422 * 65.16312 * 10 9 8 12 12 H 1.07997 * 120.00438 * 264.97349 * 11 10 9 13 13 C 1.37878 * 119.99580 * 84.96265 * 11 10 9 14 14 N 1.31518 * 120.00407 * 353.07686 * 13 11 10 15 15 Si 1.86800 * 119.99839 * 173.07098 * 13 11 10 16 16 H 1.48493 * 109.47184 * 60.00084 * 15 13 11 17 17 H 1.48500 * 109.47176 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47159 * 300.00497 * 15 13 11 19 19 C 1.53006 * 117.50036 * 279.49756 * 10 9 8 20 20 C 1.53005 * 117.49999 * 210.83632 * 10 9 8 21 21 N 1.31860 * 120.76534 * 359.48645 * 5 4 3 22 22 C 1.31882 * 121.72553 * 0.26714 * 21 5 4 23 23 H 1.09010 * 109.46963 * 270.01872 * 1 2 3 24 24 H 1.08996 * 109.47370 * 30.01848 * 1 2 3 25 25 H 1.08995 * 109.46761 * 150.02542 * 1 2 3 26 26 H 1.08001 * 120.79133 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.41571 * 180.28709 * 4 3 2 28 28 H 1.08996 * 109.46941 * 4.73024 * 6 5 4 29 29 H 1.08999 * 109.46800 * 244.73171 * 6 5 4 30 30 H 1.08998 * 109.46872 * 59.99665 * 7 6 5 31 31 H 1.09001 * 109.46913 * 300.00202 * 7 6 5 32 32 H 1.00901 * 111.00145 * 56.04455 * 8 7 6 33 33 H 1.09003 * 109.46893 * 294.69783 * 9 8 7 34 34 H 1.08995 * 109.47185 * 54.70312 * 9 8 7 35 35 H 0.96991 * 119.99751 * 185.04077 * 14 13 11 36 36 H 1.08998 * 117.49369 * 359.97438 * 19 10 9 37 37 H 1.08996 * 117.49893 * 145.01800 * 19 10 9 38 38 H 1.09001 * 117.49895 * 214.97896 * 20 10 9 39 39 H 1.08994 * 117.49474 * 359.97438 * 20 10 9 40 40 H 1.08002 * 119.62049 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1477 0.0061 5 6 4.2256 -0.0820 0.0013 6 6 5.7313 -0.1466 0.0022 7 6 6.2047 -0.9946 1.1845 8 7 7.6723 -1.0569 1.1857 9 6 8.1639 -1.8655 2.3094 10 6 9.6826 -2.0170 2.2027 11 6 10.4750 -0.7439 2.3515 12 1 10.7778 -0.1906 1.4748 13 6 10.8133 -0.2853 3.6070 14 7 10.3315 -0.8803 4.6764 15 14 11.9560 1.1812 3.7891 16 1 11.3523 2.3645 3.1256 17 1 12.1615 1.4726 5.2307 18 1 13.2631 0.8719 3.1558 19 6 10.2209 -3.0753 1.2376 20 6 10.3043 -3.3040 2.7489 21 7 3.5255 -1.1994 0.0012 22 6 2.2067 -1.1915 0.0004 23 1 -0.3633 0.0003 1.0278 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6888 2.1424 0.0004 27 1 4.1734 2.0594 0.0109 28 1 6.1380 0.8607 0.0917 29 1 6.0762 -0.5964 -0.9288 30 1 5.7979 -2.0018 1.0950 31 1 5.8596 -0.5448 2.1155 32 1 8.0736 -0.1313 1.2030 33 1 7.9131 -1.3726 3.2487 34 1 7.6975 -2.8502 2.2799 35 1 10.5098 -0.5143 5.5567 36 1 9.4930 -3.6638 0.6791 37 1 11.1482 -2.8507 0.7107 38 1 11.2865 -3.2297 3.2156 39 1 9.6313 -4.0424 3.1847 40 1 1.6673 -2.1272 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689499173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:36 Heat of formation + Delta-G solvation = 43.690372 kcal Electronic energy + Delta-G solvation = -18512.188998 eV Core-core repulsion = 15712.866068 eV Total energy + Delta-G solvation = -2799.322931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35874 -36.97960 -35.29595 -33.58081 -32.24316 -31.86070 -30.02759 -26.72544 -25.46603 -24.25269 -23.50092 -21.93539 -21.01475 -20.77363 -18.95095 -16.76305 -16.25092 -15.78558 -15.25050 -15.20638 -14.59470 -14.36059 -13.90725 -13.82089 -13.44905 -13.09960 -12.99535 -12.76994 -12.48356 -12.32062 -11.90804 -11.60114 -11.23339 -10.98454 -10.91501 -10.86307 -10.65555 -10.40617 -10.05584 -9.86115 -9.43361 -9.32717 -8.78085 -8.69267 -8.36987 -7.99439 -7.41279 -5.98115 -4.04169 1.02293 1.21003 3.31475 3.37042 3.39853 3.70140 4.27097 4.42839 4.56588 4.64730 4.78251 4.85935 5.14185 5.25568 5.29661 5.30298 5.45614 5.46013 5.61497 5.64484 5.71415 5.81841 5.95528 6.07567 6.12469 6.25245 6.39366 6.47585 6.56621 6.67240 6.68137 6.92556 6.93417 7.00079 7.24303 7.59965 7.63209 7.92281 7.99560 8.07416 8.37337 8.55898 8.99078 9.61032 11.09812 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.003721 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.521105 B = 7522.092267 C = 8087.312989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.154 4.154 3 C -0.076 4.076 4 C -0.168 4.168 5 C 0.137 3.863 6 C -0.068 4.068 7 C 0.070 3.930 8 N -0.682 5.682 9 C 0.107 3.893 10 C 0.051 3.949 11 C -0.494 4.494 12 H 0.060 0.940 13 C 0.070 3.930 14 N -0.881 5.881 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C -0.200 4.200 20 C -0.163 4.163 21 N -0.475 5.475 22 C 0.102 3.898 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.345 0.655 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 3.391 -8.076 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.156 4.156 3 C -0.102 4.102 4 C -0.188 4.188 5 C -0.001 4.001 6 C -0.107 4.107 7 C -0.061 4.061 8 N -0.313 5.313 9 C -0.022 4.022 10 C 0.051 3.949 11 C -0.532 4.532 12 H 0.078 0.922 13 C -0.133 4.133 14 N -0.517 5.517 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.238 4.238 20 C -0.202 4.202 21 N -0.183 5.183 22 C -0.056 4.056 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.163 0.837 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.790 2.037 -8.297 18.838 hybrid contribution -0.059 2.232 1.069 2.475 sum -16.849 4.269 -7.228 18.824 Atomic orbital electron populations 1.20683 0.90434 1.02869 1.02436 1.20899 0.97439 0.94403 1.02843 1.21455 0.94049 0.98040 0.96693 1.22036 0.95081 0.99197 1.02457 1.21390 0.96959 0.88208 0.93576 1.20560 0.87328 1.01480 1.01294 1.21776 0.90115 0.99639 0.94525 1.60434 1.03744 1.20013 1.47107 1.21408 0.95647 0.94602 0.90499 1.18722 0.90049 0.89356 0.96821 1.20447 1.33587 1.07143 0.91978 0.92219 1.25011 0.95706 0.96600 0.96013 1.69988 1.44622 1.39250 0.97884 0.86736 0.81862 0.83004 0.76817 1.20298 1.21460 1.20240 1.22871 1.01778 1.06794 0.92314 1.22535 1.01771 1.01641 0.94208 1.67523 1.07906 1.31197 1.11720 1.22670 0.89888 0.97367 0.95677 0.91085 0.91564 0.91300 0.85114 0.84746 0.90491 0.89104 0.90828 0.96547 0.83683 0.94778 0.94462 0.93100 0.91642 0.90940 0.90387 0.92208 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.04 36.01 0.36 -0.34 16 2 C -0.15 -1.52 5.90 -104.48 -0.62 -2.13 16 3 C -0.08 -0.76 9.86 -39.27 -0.39 -1.15 16 4 C -0.17 -1.93 9.71 -39.44 -0.38 -2.31 16 5 C 0.14 1.88 6.18 -82.58 -0.51 1.37 16 6 C -0.07 -0.98 5.87 -27.88 -0.16 -1.15 16 7 C 0.07 1.21 5.53 -3.82 -0.02 1.19 16 8 N -0.68 -13.82 6.47 -113.78 -0.74 -14.56 16 9 C 0.11 2.49 5.54 -3.82 -0.02 2.47 16 10 C 0.05 1.28 1.56 -155.66 -0.24 1.04 16 11 C -0.49 -13.36 8.33 -34.44 -0.29 -13.65 16 12 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 13 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 14 N -0.88 -25.03 12.95 55.43 0.72 -24.31 16 15 Si 0.89 21.03 29.55 -169.99 -5.02 16.01 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.20 -4.62 9.96 -26.69 -0.27 -4.88 16 20 C -0.16 -4.00 9.46 -26.69 -0.25 -4.25 16 21 N -0.48 -6.86 9.88 -9.47 -0.09 -6.96 16 22 C 0.10 1.18 10.86 -17.55 -0.19 0.99 16 23 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 24 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 25 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.13 1.28 7.95 -52.49 -0.42 0.86 16 28 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.34 7.95 -51.93 -0.41 0.93 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.34 7.13 8.30 -39.29 -0.33 6.81 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -29.68 338.07 -9.71 -39.39 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.60 Total: 6.32 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -3.08 Total: -20.99 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.11 Total: -45.83 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.68 -9.71 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689499173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.084 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds