Wall clock time and date at job start Mon Mar 30 2020 07:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38676 * 120.41417 * 2 1 4 4 C 1.38634 * 118.41911 * 179.71455 * 3 2 1 5 5 C 1.38220 * 119.15878 * 0.50369 * 4 3 2 6 6 C 1.50704 * 119.61861 * 179.75685 * 5 4 3 7 7 C 1.53000 * 109.47288 * 124.73123 * 6 5 4 8 8 N 1.46900 * 109.47146 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99720 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46879 * 174.70052 * 9 8 7 11 11 C 1.50702 * 115.55422 * 65.16312 * 10 9 8 12 12 H 1.07997 * 120.00438 * 264.97349 * 11 10 9 13 13 C 1.37878 * 119.99580 * 84.96265 * 11 10 9 14 14 N 1.31518 * 120.00407 * 353.07686 * 13 11 10 15 15 Si 1.86800 * 119.99839 * 173.07098 * 13 11 10 16 16 H 1.48493 * 109.47184 * 60.00084 * 15 13 11 17 17 H 1.48500 * 109.47176 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47159 * 300.00497 * 15 13 11 19 19 C 1.53006 * 117.50036 * 279.49756 * 10 9 8 20 20 C 1.53005 * 117.49999 * 210.83632 * 10 9 8 21 21 N 1.31860 * 120.76534 * 359.48645 * 5 4 3 22 22 C 1.31882 * 121.72553 * 0.26714 * 21 5 4 23 23 H 1.09010 * 109.46963 * 270.01872 * 1 2 3 24 24 H 1.08996 * 109.47370 * 30.01848 * 1 2 3 25 25 H 1.08995 * 109.46761 * 150.02542 * 1 2 3 26 26 H 1.08001 * 120.79133 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.41571 * 180.28709 * 4 3 2 28 28 H 1.08996 * 109.46941 * 4.73024 * 6 5 4 29 29 H 1.08999 * 109.46800 * 244.73171 * 6 5 4 30 30 H 1.08998 * 109.46872 * 59.99665 * 7 6 5 31 31 H 1.09001 * 109.46913 * 300.00202 * 7 6 5 32 32 H 1.00901 * 111.00145 * 56.04455 * 8 7 6 33 33 H 1.09003 * 109.46893 * 294.69783 * 9 8 7 34 34 H 1.08995 * 109.47185 * 54.70312 * 9 8 7 35 35 H 0.96991 * 119.99751 * 185.04077 * 14 13 11 36 36 H 1.08998 * 117.49369 * 359.97438 * 19 10 9 37 37 H 1.08996 * 117.49893 * 145.01800 * 19 10 9 38 38 H 1.09001 * 117.49895 * 214.97896 * 20 10 9 39 39 H 1.08994 * 117.49474 * 359.97438 * 20 10 9 40 40 H 1.08002 * 119.62049 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1477 0.0061 5 6 4.2256 -0.0820 0.0013 6 6 5.7313 -0.1466 0.0022 7 6 6.2047 -0.9946 1.1845 8 7 7.6723 -1.0569 1.1857 9 6 8.1639 -1.8655 2.3094 10 6 9.6826 -2.0170 2.2027 11 6 10.4750 -0.7439 2.3515 12 1 10.7778 -0.1906 1.4748 13 6 10.8133 -0.2853 3.6070 14 7 10.3315 -0.8803 4.6764 15 14 11.9560 1.1812 3.7891 16 1 11.3523 2.3645 3.1256 17 1 12.1615 1.4726 5.2307 18 1 13.2631 0.8719 3.1558 19 6 10.2209 -3.0753 1.2376 20 6 10.3043 -3.3040 2.7489 21 7 3.5255 -1.1994 0.0012 22 6 2.2067 -1.1915 0.0004 23 1 -0.3633 0.0003 1.0278 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6888 2.1424 0.0004 27 1 4.1734 2.0594 0.0109 28 1 6.1380 0.8607 0.0917 29 1 6.0762 -0.5964 -0.9288 30 1 5.7979 -2.0018 1.0950 31 1 5.8596 -0.5448 2.1155 32 1 8.0736 -0.1313 1.2030 33 1 7.9131 -1.3726 3.2487 34 1 7.6975 -2.8502 2.2799 35 1 10.5098 -0.5143 5.5567 36 1 9.4930 -3.6638 0.6791 37 1 11.1482 -2.8507 0.7107 38 1 11.2865 -3.2297 3.2156 39 1 9.6313 -4.0424 3.1847 40 1 1.6673 -2.1272 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689499173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:36 Heat of formation + Delta-G solvation = 26.646514 kcal Electronic energy + Delta-G solvation = -18512.928076 eV Core-core repulsion = 15712.866068 eV Total energy + Delta-G solvation = -2800.062008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23068 -38.81665 -36.69950 -34.65291 -33.94975 -33.18051 -31.13052 -27.99898 -27.28648 -25.58738 -24.56555 -23.16701 -22.74771 -22.01695 -20.90399 -17.94297 -17.63437 -17.08318 -16.74816 -16.58807 -15.99493 -15.73227 -15.37981 -15.14719 -14.78860 -14.25495 -13.97431 -13.93054 -13.66182 -13.28819 -13.21956 -13.11783 -12.92919 -12.79660 -12.47559 -12.36088 -12.28340 -12.05979 -11.94406 -11.29773 -10.71664 -10.70145 -10.40149 -10.30564 -9.92870 -9.63482 -9.14225 -8.06649 -6.18567 0.16240 0.38427 1.43267 1.45792 1.52363 2.44606 2.80867 3.20620 3.21856 3.47186 3.70622 3.94683 3.97078 4.05154 4.12798 4.26395 4.34919 4.39258 4.51710 4.66630 4.68322 4.73292 4.78105 4.84468 4.89383 4.97716 4.99668 5.06765 5.10140 5.16289 5.24168 5.27618 5.29092 5.38770 5.66977 5.68479 5.81116 5.84633 6.32702 6.49317 6.67054 6.90745 7.10318 7.49587 9.00718 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.003721 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.521105 B = 7522.092267 C = 8087.312989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.147 4.147 3 C -0.080 4.080 4 C -0.171 4.171 5 C 0.108 3.892 6 C -0.057 4.057 7 C 0.078 3.922 8 N -0.678 5.678 9 C 0.121 3.879 10 C 0.028 3.972 11 C -0.505 4.505 12 H 0.056 0.944 13 C 0.024 3.976 14 N -0.910 5.910 15 Si 0.950 3.050 16 H -0.267 1.267 17 H -0.289 1.289 18 H -0.275 1.275 19 C -0.178 4.178 20 C -0.169 4.169 21 N -0.510 5.510 22 C 0.082 3.918 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.162 0.838 27 H 0.152 0.848 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.006 0.994 32 H 0.342 0.658 33 H 0.002 0.998 34 H 0.040 0.960 35 H 0.258 0.742 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.758 4.689 -9.093 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.149 4.149 3 C -0.105 4.105 4 C -0.190 4.190 5 C -0.030 4.030 6 C -0.096 4.096 7 C -0.052 4.052 8 N -0.308 5.308 9 C -0.008 4.008 10 C 0.027 3.973 11 C -0.543 4.543 12 H 0.074 0.926 13 C -0.176 4.176 14 N -0.548 5.548 15 Si 0.776 3.224 16 H -0.192 1.192 17 H -0.215 1.215 18 H -0.200 1.200 19 C -0.215 4.215 20 C -0.208 4.208 21 N -0.219 5.219 22 C -0.075 4.075 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.180 0.820 27 H 0.170 0.830 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.161 0.839 33 H 0.021 0.979 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.226 3.337 -9.336 20.748 hybrid contribution 0.289 1.793 1.363 2.271 sum -17.938 5.130 -7.973 20.289 Atomic orbital electron populations 1.20760 0.87838 1.04243 1.03358 1.21296 0.99277 0.93719 1.00573 1.21874 0.93565 0.99470 0.95621 1.22257 0.96172 0.98878 1.01740 1.21309 0.96394 0.89223 0.96054 1.20407 0.88510 1.01346 0.99289 1.21716 0.88092 0.99708 0.95657 1.60418 1.05494 1.19542 1.45376 1.21145 0.94795 0.94867 0.90031 1.18873 0.90860 0.89175 0.98362 1.20686 1.33739 1.07895 0.91968 0.92592 1.25701 0.96921 0.99265 0.95701 1.70108 1.45867 1.40681 0.98152 0.85743 0.79845 0.80189 0.76627 1.19216 1.21468 1.20038 1.22847 1.01931 1.05284 0.91449 1.22464 1.00926 1.01922 0.95456 1.67427 1.09498 1.32096 1.12886 1.23076 0.89275 0.99094 0.96092 0.90199 0.89986 0.90219 0.82012 0.83033 0.89094 0.89674 0.91922 0.97548 0.83947 0.97936 0.94112 0.93282 0.89849 0.90716 0.92382 0.91327 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.04 71.24 0.72 -0.33 16 2 C -0.15 -2.57 5.90 -19.77 -0.12 -2.68 16 3 C -0.08 -1.38 9.86 22.47 0.22 -1.16 16 4 C -0.17 -3.65 9.71 22.36 0.22 -3.43 16 5 C 0.11 2.92 6.18 42.55 0.26 3.18 16 6 C -0.06 -1.64 5.87 29.85 0.18 -1.46 16 7 C 0.08 2.76 5.53 86.30 0.48 3.24 16 8 N -0.68 -27.66 6.47 -513.89 -3.32 -30.99 16 9 C 0.12 5.72 5.54 86.30 0.48 6.19 16 10 C 0.03 1.41 1.56 -52.92 -0.08 1.33 16 11 C -0.50 -27.44 8.33 25.60 0.21 -27.23 16 12 H 0.06 3.02 7.82 -2.91 -0.02 2.99 16 13 C 0.02 1.32 5.39 84.65 0.46 1.78 16 14 N -0.91 -52.48 12.95 21.45 0.28 -52.20 16 15 Si 0.95 43.19 29.55 68.60 2.03 45.22 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 C -0.18 -8.06 9.96 30.62 0.30 -7.75 16 20 C -0.17 -8.34 9.46 30.62 0.29 -8.05 16 21 N -0.51 -14.68 9.88 -183.89 -1.82 -16.50 16 22 C 0.08 1.82 10.86 84.67 0.92 2.74 16 23 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.08 0.59 8.10 -2.39 -0.02 0.57 16 25 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 26 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 27 H 0.15 2.57 7.95 -2.91 -0.02 2.55 16 28 H 0.09 2.28 7.87 -2.39 -0.02 2.26 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.06 2.34 7.95 -2.39 -0.02 2.32 16 31 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.34 14.25 8.30 -89.69 -0.74 13.50 16 33 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 36 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -63.73 338.07 1.96 -61.78 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.26 Total: 26.32 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 4.53 Total: -33.63 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -4.86 Total: -99.69 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -63.73 1.96 -61.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689499173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.424 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds