Wall clock time and date at job start Mon Mar 30 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47049 * 269.99872 * 3 2 1 5 5 H 1.48497 * 109.47093 * 29.99741 * 3 2 1 6 6 H 1.48494 * 109.47103 * 149.99969 * 3 2 1 7 7 C 1.37879 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99835 * 173.06312 * 7 2 1 9 9 C 1.50703 * 120.00022 * 353.06148 * 7 2 1 10 10 C 1.52996 * 115.54709 * 84.96474 * 9 7 2 11 11 N 1.46904 * 109.47182 * 65.16943 * 10 9 7 12 12 C 1.46903 * 111.00022 * 174.69786 * 11 10 9 13 13 C 1.52994 * 109.47143 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47094 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47010 * 179.97438 * 14 13 12 16 16 C 1.38225 * 119.61562 * 125.02196 * 15 14 13 17 17 C 1.38632 * 119.16183 * 179.75085 * 16 15 14 18 18 C 1.38674 * 118.41631 * 0.46664 * 17 16 15 19 19 C 1.38174 * 119.16582 * 359.51605 * 18 17 16 20 20 N 1.31851 * 119.62088 * 305.00161 * 15 14 13 21 21 C 1.52998 * 117.49640 * 230.63522 * 9 7 2 22 22 C 1.52998 * 117.49860 * 299.29448 * 9 7 2 23 23 H 0.96996 * 119.99972 * 5.04615 * 1 2 3 24 24 H 1.09000 * 109.47144 * 305.16731 * 10 9 7 25 25 H 1.09003 * 109.47019 * 185.16668 * 10 9 7 26 26 H 1.00900 * 110.99765 * 298.65130 * 11 10 9 27 27 H 1.08998 * 109.46914 * 59.99807 * 12 11 10 28 28 H 1.09004 * 109.47016 * 300.00276 * 12 11 10 29 29 H 1.08998 * 109.47437 * 60.00049 * 13 12 11 30 30 H 1.09004 * 109.47326 * 300.00008 * 13 12 11 31 31 H 1.09004 * 109.46767 * 60.00343 * 14 13 12 32 32 H 1.08997 * 109.47136 * 299.99760 * 14 13 12 33 33 H 1.07998 * 120.42134 * 359.95760 * 16 15 14 34 34 H 1.08001 * 120.79035 * 180.23233 * 17 16 15 35 35 H 1.07998 * 120.41339 * 179.78094 * 18 17 16 36 36 H 1.08004 * 119.62180 * 180.24804 * 19 18 17 37 37 H 1.09004 * 117.49678 * 215.00498 * 21 9 7 38 38 H 1.08999 * 117.49988 * 0.02562 * 21 9 7 39 39 H 1.09005 * 117.49627 * 359.97438 * 22 9 7 40 40 H 1.08999 * 117.49897 * 144.97189 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0786 -1.1976 -0.1124 9 6 1.2593 -2.4944 0.1588 10 6 0.6846 -3.0865 -1.1296 11 7 1.7839 -3.4625 -2.0286 12 6 1.2753 -4.1499 -3.2232 13 6 2.4467 -4.5255 -4.1329 14 6 1.9169 -5.2408 -5.3773 15 6 3.0707 -5.6102 -6.2737 16 6 3.2359 -6.9248 -6.6677 17 6 4.2975 -7.2533 -7.4966 18 6 5.1627 -6.2443 -7.8920 19 6 4.9339 -4.9525 -7.4581 20 7 3.9106 -4.6758 -6.6733 21 6 1.7624 -3.4720 1.2227 22 6 0.4608 -2.6986 1.4478 23 1 -0.4850 0.8368 -0.0739 24 1 0.0519 -2.3461 -1.6191 25 1 0.0922 -3.9698 -0.8908 26 1 2.3352 -2.6565 -2.2824 27 1 0.5948 -3.4892 -3.7604 28 1 0.7439 -5.0533 -2.9239 29 1 3.1268 -5.1863 -3.5954 30 1 2.9785 -3.6223 -4.4322 31 1 1.2371 -4.5796 -5.9147 32 1 1.3849 -6.1440 -5.0785 33 1 2.5448 -7.6859 -6.3368 34 1 4.4492 -8.2714 -7.8235 35 1 6.0024 -6.4647 -8.5345 36 1 5.6009 -4.1603 -7.7648 37 1 1.6840 -4.5371 1.0047 38 1 2.6322 -3.1745 1.8084 39 1 0.4749 -1.8926 2.1816 40 1 -0.4742 -3.2545 1.3779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693689699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:37 Heat of formation + Delta-G solvation = 44.156557 kcal Electronic energy + Delta-G solvation = -18396.409278 eV Core-core repulsion = 15597.106563 eV Total energy + Delta-G solvation = -2799.302716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31575 -37.03015 -35.51308 -33.28747 -32.46542 -31.85336 -30.20406 -26.54624 -25.33389 -23.79532 -23.43453 -21.77025 -20.94881 -20.75577 -18.91615 -16.98574 -16.39721 -15.86577 -15.66197 -15.26360 -14.57053 -14.34549 -14.12755 -13.82819 -13.61947 -13.30444 -13.09309 -12.62909 -12.24227 -11.81375 -11.63790 -11.41836 -11.19598 -10.92371 -10.85560 -10.68965 -10.44230 -10.35929 -10.06447 -10.01337 -9.50633 -9.34315 -9.06921 -8.68172 -8.36359 -7.99679 -7.39431 -5.97223 -4.02873 0.96106 1.12695 3.32004 3.39395 3.43662 3.65560 4.18774 4.44646 4.50309 4.66884 4.88673 4.93006 5.01824 5.25634 5.30816 5.32039 5.51023 5.52721 5.72121 5.72590 5.81820 5.91615 6.00322 6.04755 6.12822 6.25615 6.50458 6.53445 6.55765 6.61864 6.66427 6.92080 6.92268 7.00065 7.23310 7.59393 7.63366 7.90620 7.93751 8.10066 8.38709 8.56672 9.00361 9.62471 11.10738 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.003630 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.338009 B = 7711.595565 C = 8390.973789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.106 3.894 11 N -0.683 5.683 12 C 0.059 3.941 13 C -0.106 4.106 14 C -0.070 4.070 15 C 0.140 3.860 16 C -0.174 4.174 17 C -0.075 4.075 18 C -0.186 4.186 19 C 0.103 3.897 20 N -0.479 5.479 21 C -0.201 4.201 22 C -0.163 4.163 23 H 0.258 0.742 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.347 0.653 27 H 0.021 0.979 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 -12.978 -14.515 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.051 3.949 10 C -0.023 4.023 11 N -0.314 5.314 12 C -0.071 4.071 13 C -0.144 4.144 14 C -0.109 4.109 15 C 0.002 3.998 16 C -0.194 4.194 17 C -0.101 4.101 18 C -0.206 4.206 19 C -0.054 4.054 20 N -0.188 5.188 21 C -0.238 4.238 22 C -0.201 4.201 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.166 0.834 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.266 -12.566 -13.828 19.413 hybrid contribution 0.163 0.745 -0.840 1.135 sum 5.429 -11.821 -14.668 19.605 Atomic orbital electron populations 1.69996 1.05867 1.26523 1.49401 1.25004 0.94773 0.98809 0.94728 0.86672 0.80042 0.83712 0.78095 1.20736 1.21317 1.19813 1.20479 0.93134 0.88880 1.50559 0.92204 1.18731 0.97244 0.93308 0.85665 1.21419 0.91054 0.95814 0.93981 1.60430 1.24018 1.32323 1.14627 1.21902 0.95512 0.98325 0.91371 1.21448 0.98412 1.00973 0.93575 1.20581 0.93804 1.01522 0.94963 1.21404 0.94868 0.89203 0.94312 1.22028 0.99686 0.97570 1.00091 1.21574 0.93638 0.99684 0.95241 1.22111 1.01185 0.94539 1.02767 1.22795 0.94190 0.95623 0.92840 1.67524 1.03549 1.36984 1.10725 1.22866 0.97572 0.95846 1.07521 1.22533 0.92439 1.01337 1.03829 0.93175 0.94737 0.94617 0.83436 0.96127 0.92157 0.91558 0.90987 0.90002 0.90348 0.84830 0.85043 0.85039 0.82834 0.91732 0.90950 0.90380 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.10 12.95 55.43 0.72 -24.38 16 2 C 0.07 1.91 5.39 -17.82 -0.10 1.82 16 3 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.49 -13.46 8.32 -34.44 -0.29 -13.75 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.05 1.29 1.56 -155.66 -0.24 1.04 16 10 C 0.11 2.44 5.54 -3.82 -0.02 2.42 16 11 N -0.68 -13.88 6.47 -113.78 -0.74 -14.61 16 12 C 0.06 0.97 5.68 -3.83 -0.02 0.95 16 13 C -0.11 -1.52 5.33 -26.73 -0.14 -1.66 16 14 C -0.07 -0.82 5.61 -27.88 -0.16 -0.98 16 15 C 0.14 1.69 6.18 -82.59 -0.51 1.18 16 16 C -0.17 -1.71 9.71 -39.44 -0.38 -2.09 16 17 C -0.08 -0.64 10.18 -39.28 -0.40 -1.04 16 18 C -0.19 -1.60 10.11 -39.44 -0.40 -2.00 16 19 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 20 N -0.48 -6.34 9.88 -9.47 -0.09 -6.44 16 21 C -0.20 -4.62 9.96 -26.69 -0.27 -4.89 16 22 C -0.16 -3.98 9.46 -26.69 -0.25 -4.23 16 23 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.35 7.44 8.30 -39.29 -0.33 7.11 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 33 H 0.13 1.02 7.95 -52.49 -0.42 0.60 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -29.97 338.11 -10.02 -39.99 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.60 Total: 6.44 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.37 Total: -22.34 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.11 Total: -45.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.97 -10.02 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693689699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.147 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds