Wall clock time and date at job start Mon Mar 30 2020 06:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00155 * 2 1 4 4 C 1.52998 * 109.47642 * 270.00903 * 3 2 1 5 5 C 1.52998 * 115.55080 * 34.32171 * 4 3 2 6 6 C 1.52996 * 117.49744 * 248.62166 * 4 3 2 7 7 C 1.52993 * 60.00121 * 252.50673 * 6 4 3 8 8 C 1.39852 * 120.00138 * 180.02562 * 2 1 3 9 9 C 1.39608 * 119.84113 * 179.97438 * 8 2 1 10 10 C 1.38055 * 120.54982 * 179.97438 * 9 8 2 11 11 C 1.38733 * 120.22097 * 359.78089 * 10 9 8 12 12 N 1.38867 * 120.16461 * 180.25689 * 11 10 9 13 13 C 1.41568 * 119.67163 * 0.49655 * 11 10 9 14 14 C 1.41031 * 120.26473 * 179.76801 * 13 11 10 15 15 H 1.07998 * 119.99979 * 328.87482 * 14 13 11 16 16 C 1.39884 * 119.99788 * 149.15482 * 14 13 11 17 17 N 1.30899 * 119.99641 * 162.33987 * 16 14 13 18 18 Si 1.86799 * 120.00157 * 342.33504 * 16 14 13 19 19 H 1.48495 * 109.47040 * 87.11537 * 18 16 14 20 20 H 1.48498 * 109.46756 * 207.11438 * 18 16 14 21 21 H 1.48504 * 109.47102 * 327.11471 * 18 16 14 22 22 C 1.38004 * 119.84020 * 359.97438 * 8 2 1 23 23 H 1.09003 * 109.46607 * 269.99277 * 1 2 3 24 24 H 1.08997 * 109.47202 * 29.99126 * 1 2 3 25 25 H 1.08994 * 109.47244 * 149.99577 * 1 2 3 26 26 H 1.09001 * 109.46746 * 30.00813 * 3 2 1 27 27 H 1.09001 * 109.47240 * 150.00271 * 3 2 1 28 28 H 1.09006 * 109.46692 * 85.58524 * 5 4 3 29 29 H 1.08999 * 109.47758 * 205.58725 * 5 4 3 30 30 H 1.09002 * 109.47066 * 325.59293 * 5 4 3 31 31 H 1.09008 * 117.50122 * 359.97438 * 6 4 3 32 32 H 1.09000 * 117.50088 * 145.01844 * 6 4 3 33 33 H 1.08996 * 117.49945 * 252.51501 * 7 6 4 34 34 H 1.09002 * 117.50396 * 107.48714 * 7 6 4 35 35 H 1.08004 * 119.72268 * 0.02562 * 9 8 2 36 36 H 1.08004 * 119.88768 * 180.02562 * 10 9 8 37 37 H 0.97001 * 119.99817 * 185.55755 * 12 11 10 38 38 H 0.96997 * 119.99810 * 5.56036 * 12 11 10 39 39 H 0.97000 * 120.00133 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.11625 * 359.97438 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 1.3509 1.3596 -2.4445 6 6 3.8977 1.6866 -1.9437 7 6 3.2099 3.0226 -1.6560 8 6 2.1643 -1.2111 -0.0005 9 6 3.5603 -1.2072 -0.0011 10 6 4.2654 -2.3942 -0.0011 11 6 3.5913 -3.6067 0.0040 12 7 4.3017 -4.8000 0.0094 13 6 2.1758 -3.6217 -0.0014 14 6 1.4778 -4.8472 -0.0012 15 1 1.9082 -5.7138 -0.4810 16 6 0.2255 -4.9388 0.6153 17 7 -0.5714 -5.9381 0.3330 18 14 -0.3094 -3.6351 1.8415 19 1 -0.9560 -2.5109 1.1183 20 1 -1.2751 -4.2261 2.8025 21 1 0.8775 -3.1321 2.5787 22 6 1.4709 -2.4044 -0.0005 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0283 0.5140 27 1 3.1500 1.1384 0.5138 28 1 0.5870 2.1371 -2.4318 29 1 1.7788 1.2870 -3.4444 30 1 0.9018 0.4047 -2.1712 31 1 4.6672 1.3564 -1.2456 32 1 4.0641 1.4207 -2.9875 33 1 2.9237 3.6356 -2.5106 34 1 3.5266 3.5711 -0.7689 35 1 4.0932 -0.2678 -0.0007 36 1 5.3453 -2.3787 -0.0011 37 1 3.8314 -5.6447 -0.0684 38 1 5.2682 -4.7886 0.0910 39 1 -1.4396 -6.0019 0.7607 40 1 0.3910 -2.4036 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693835410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:23 Heat of formation + Delta-G solvation = 41.385348 kcal Electronic energy + Delta-G solvation = -19990.192812 eV Core-core repulsion = 17190.769928 eV Total energy + Delta-G solvation = -2799.422884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44816 -39.03830 -36.84155 -35.30592 -33.81556 -32.20589 -29.65719 -29.17324 -28.58895 -26.50854 -24.90527 -23.26334 -22.94572 -21.15546 -19.91772 -18.94612 -18.19826 -17.43139 -16.72507 -16.54221 -16.30733 -15.94915 -15.14350 -15.09962 -14.63532 -14.48386 -14.14618 -13.82388 -13.71170 -13.55829 -13.08602 -12.92093 -12.80145 -12.60676 -12.50887 -12.37104 -12.27707 -12.11639 -11.70297 -11.35813 -11.32881 -11.01739 -10.81898 -10.41753 -9.34793 -9.27120 -8.75760 -7.42966 -6.12745 0.94249 1.21885 1.29483 1.52757 1.54974 2.20156 2.49643 2.78871 3.01252 3.69437 3.72762 3.90407 3.97445 4.14096 4.23027 4.33920 4.46697 4.57700 4.61268 4.71138 4.82573 4.86969 4.89255 4.98659 5.02106 5.05780 5.10998 5.18490 5.25483 5.34399 5.36856 5.45931 5.51230 5.71883 5.83755 5.99039 6.23271 6.37144 6.65721 6.86193 6.95205 7.02313 7.32443 7.59308 8.33354 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.007354 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.150763 B = 3806.727215 C = 4620.244412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.637 5.637 3 C 0.167 3.833 4 C -0.154 4.154 5 C -0.111 4.111 6 C -0.178 4.178 7 C -0.154 4.154 8 C 0.193 3.807 9 C -0.235 4.235 10 C -0.144 4.144 11 C 0.082 3.918 12 N -0.879 5.879 13 C 0.048 3.952 14 C -0.475 4.475 15 H 0.059 0.941 16 C 0.048 3.952 17 N -0.866 5.866 18 Si 0.966 3.034 19 H -0.254 1.254 20 H -0.291 1.291 21 H -0.270 1.270 22 C -0.286 4.286 23 H 0.034 0.966 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.389 0.611 38 H 0.393 0.607 39 H 0.286 0.714 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 16.064 -0.975 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.352 5.352 3 C 0.044 3.956 4 C -0.155 4.155 5 C -0.168 4.168 6 C -0.215 4.215 7 C -0.191 4.191 8 C 0.093 3.907 9 C -0.259 4.259 10 C -0.169 4.169 11 C -0.021 4.021 12 N -0.422 5.422 13 C 0.042 3.958 14 C -0.507 4.507 15 H 0.077 0.923 16 C -0.164 4.164 17 N -0.495 5.495 18 Si 0.793 3.207 19 H -0.180 1.180 20 H -0.218 1.218 21 H -0.195 1.195 22 C -0.310 4.310 23 H 0.052 0.948 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.217 0.783 38 H 0.221 0.779 39 H 0.096 0.904 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.410 16.070 -0.956 16.692 hybrid contribution -0.323 -0.706 0.285 0.827 sum 4.087 15.364 -0.671 15.913 Atomic orbital electron populations 1.21603 0.80665 1.02132 1.00145 1.46232 1.04068 1.02662 1.82201 1.20895 0.97029 0.84320 0.93393 1.22051 0.93941 1.02336 0.97206 1.21288 0.97397 1.01362 0.96795 1.23112 0.95033 1.01716 1.01660 1.23054 1.02559 0.89753 1.03733 1.17463 0.91356 0.84926 0.96955 1.20101 0.91149 0.97283 1.17354 1.20194 0.98357 0.90679 1.07621 1.18000 0.90719 0.87336 1.06001 1.41775 1.07984 1.05113 1.87317 1.17345 0.90988 0.92674 0.94769 1.19053 1.01599 0.96617 1.33395 0.92307 1.26581 0.94994 0.97353 0.97436 1.69771 1.09027 1.32137 1.38572 0.85549 0.78111 0.78677 0.78387 1.17998 1.21849 1.19462 1.20591 0.98028 0.91583 1.20812 0.94758 0.89502 0.93807 0.89683 0.90962 0.91552 0.93303 0.93215 0.89032 0.89667 0.88079 0.87590 0.86063 0.86230 0.78290 0.77858 0.90423 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.12 8.71 127.77 1.11 4.23 16 2 N -0.64 -21.83 2.17 -722.22 -1.57 -23.40 16 3 C 0.17 4.39 5.32 86.38 0.46 4.85 16 4 C -0.15 -3.66 2.57 -52.18 -0.13 -3.79 16 5 C -0.11 -2.80 8.87 71.98 0.64 -2.16 16 6 C -0.18 -4.05 9.51 30.59 0.29 -3.76 16 7 C -0.15 -2.78 9.97 30.59 0.31 -2.48 16 8 C 0.19 8.13 6.55 38.14 0.25 8.38 16 9 C -0.24 -9.28 9.20 22.56 0.21 -9.07 16 10 C -0.14 -5.87 9.87 22.34 0.22 -5.65 16 11 C 0.08 3.79 6.79 38.97 0.26 4.05 16 12 N -0.88 -35.04 8.97 -50.31 -0.45 -35.49 16 13 C 0.05 2.49 5.10 -21.18 -0.11 2.38 16 14 C -0.48 -26.91 8.93 23.35 0.21 -26.70 16 15 H 0.06 3.50 6.99 -2.91 -0.02 3.48 16 16 C 0.05 2.65 5.41 85.23 0.46 3.12 16 17 N -0.87 -49.26 13.93 21.82 0.30 -48.95 16 18 Si 0.97 45.87 24.68 68.60 1.69 47.56 16 19 H -0.25 -11.30 6.23 99.48 0.62 -10.68 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 22 C -0.29 -13.99 6.46 22.81 0.15 -13.84 16 23 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 2.16 7.15 -2.39 -0.02 2.15 16 25 H 0.04 1.60 6.10 -2.39 -0.01 1.58 16 26 H 0.08 1.87 8.07 -2.39 -0.02 1.85 16 27 H 0.07 1.92 5.94 -2.39 -0.01 1.90 16 28 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.05 1.20 7.90 -2.39 -0.02 1.18 16 30 H 0.05 1.52 5.58 -2.39 -0.01 1.51 16 31 H 0.09 2.10 7.13 -2.38 -0.02 2.08 16 32 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.12 4.08 4.84 -2.91 -0.01 4.07 16 36 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.39 16.22 7.13 -92.71 -0.66 15.56 16 38 H 0.39 12.64 8.84 -92.71 -0.82 11.82 16 39 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 40 H 0.10 4.93 2.60 -2.91 -0.01 4.93 16 Total: -1.00 -62.49 308.70 3.81 -58.68 By element: Atomic # 1 Polarization: 42.53 SS G_CDS: -0.49 Total: 42.04 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 4.32 Total: -40.44 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -1.72 Total: -107.84 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.69 Total: 47.56 kcal Total: -62.49 3.81 -58.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693835410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.064 kcal (2) G-P(sol) polarization free energy of solvation -62.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds