Wall clock time and date at job start Mon Mar 30 2020 06:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48500 * 109.47400 * 239.99995 * 3 2 1 5 5 H 1.48507 * 109.46894 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46986 * 119.99894 * 3 2 1 7 7 C 1.37884 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99663 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47143 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46821 * 174.75722 * 12 11 10 14 14 C 1.48056 * 110.99855 * 174.80462 * 13 12 11 15 15 C 1.51189 * 105.74597 * 213.03256 * 14 13 12 16 16 C 1.38106 * 131.86953 * 197.47917 * 15 14 13 17 17 C 1.38267 * 120.24558 * 180.02562 * 16 15 14 18 18 C 1.38130 * 120.08493 * 0.02562 * 17 16 15 19 19 C 1.38899 * 119.91612 * 359.97438 * 18 17 16 20 20 N 1.39675 * 120.05955 * 179.97438 * 19 18 17 21 21 C 1.38496 * 108.15379 * 17.53125 * 15 14 13 22 22 C 1.48049 * 111.00144 * 59.82873 * 13 12 11 23 23 H 0.96996 * 120.00244 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46996 * 59.99831 * 9 7 2 25 25 H 1.08994 * 109.46839 * 299.99827 * 9 7 2 26 26 H 1.08998 * 109.46963 * 59.99743 * 10 9 7 27 27 H 1.09007 * 109.46818 * 300.00178 * 10 9 7 28 28 H 1.08998 * 109.47349 * 59.99977 * 11 10 9 29 29 H 1.08997 * 109.47470 * 299.99822 * 11 10 9 30 30 H 1.09003 * 109.46720 * 54.76174 * 12 11 10 31 31 H 1.08999 * 109.47452 * 294.76172 * 12 11 10 32 32 H 1.09000 * 110.20976 * 332.12280 * 14 13 12 33 33 H 1.09004 * 110.21062 * 93.93656 * 14 13 12 34 34 H 1.07996 * 119.84631 * 0.02562 * 16 15 14 35 35 H 1.07992 * 119.95398 * 179.97438 * 17 16 15 36 36 H 1.08004 * 120.03683 * 179.97438 * 18 17 16 37 37 H 0.96993 * 119.99921 * 180.02562 * 20 19 18 38 38 H 0.97005 * 120.00052 * 0.02562 * 20 19 18 39 39 H 1.09005 * 110.21251 * 265.97148 * 22 13 12 40 40 H 1.09008 * 110.20980 * 27.79244 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 7 1.7445 -7.4184 0.1278 14 6 2.6628 -8.5735 0.0075 15 6 1.8609 -9.6674 -0.6603 16 6 2.0591 -11.0312 -0.7513 17 6 1.1549 -11.8223 -1.4356 18 6 0.0480 -11.2509 -2.0326 19 6 -0.1564 -9.8799 -1.9443 20 7 -1.2743 -9.2989 -2.5473 21 6 0.7533 -9.0879 -1.2566 22 6 0.7977 -7.5995 -0.9960 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8878 28 1 0.8547 -5.0450 -0.8895 29 1 0.8528 -5.0448 0.8904 30 1 3.1608 -6.0408 0.8417 31 1 3.0386 -6.1464 -0.9309 32 1 3.5229 -8.3083 -0.6074 33 1 2.9921 -8.8972 0.9949 34 1 2.9238 -11.4808 -0.2859 35 1 1.3147 -12.8881 -1.5041 36 1 -0.6576 -11.8696 -2.5673 37 1 -1.4160 -8.3414 -2.4855 38 1 -1.9090 -9.8531 -3.0280 39 1 -0.1915 -7.2363 -0.7172 40 1 1.1568 -7.0718 -1.8797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694978733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:17 Heat of formation + Delta-G solvation = 16.425647 kcal Electronic energy + Delta-G solvation = -18488.740574 eV Core-core repulsion = 15688.235356 eV Total energy + Delta-G solvation = -2800.505218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50835 -37.56662 -34.93875 -34.37509 -32.59230 -30.83270 -29.48662 -28.14364 -27.15856 -25.08261 -23.01830 -21.69573 -21.11584 -20.63301 -19.91146 -17.21677 -16.67446 -16.19644 -16.05319 -15.44162 -15.08190 -14.57758 -14.42574 -14.29728 -13.49630 -13.25263 -13.07561 -12.71502 -12.62957 -12.30708 -12.03459 -11.53491 -11.37549 -11.20140 -11.18330 -10.95811 -10.71285 -10.54295 -10.48971 -10.37359 -9.61673 -9.25120 -9.03914 -9.00470 -8.31533 -8.22788 -7.63679 -5.96751 -3.98962 1.24709 1.50159 3.34919 3.39051 3.41689 3.70296 3.71665 3.99600 4.33111 4.48633 4.54288 4.90733 5.20740 5.25457 5.31982 5.33981 5.38749 5.47736 5.49572 5.56453 5.73847 5.78512 5.87340 5.89660 6.11058 6.12774 6.26132 6.39315 6.44888 6.51595 6.72931 6.80187 6.86996 6.96819 7.05737 7.23245 7.32109 7.59131 7.71822 7.87942 8.04263 8.47117 9.08347 9.64770 11.14614 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041781 B = 0.003102 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.000025 B = 9022.887415 C = 9563.576982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.045 3.955 13 N -0.502 5.502 14 C 0.072 3.928 15 C -0.052 4.052 16 C -0.161 4.161 17 C -0.072 4.072 18 C -0.201 4.201 19 C 0.238 3.762 20 N -0.878 5.878 21 C -0.182 4.182 22 C 0.088 3.912 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.400 0.600 38 H 0.397 0.603 39 H 0.084 0.916 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -23.339 -4.148 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.083 4.083 13 N -0.225 5.225 14 C -0.055 4.055 15 C -0.054 4.054 16 C -0.182 4.182 17 C -0.091 4.091 18 C -0.224 4.224 19 C 0.132 3.868 20 N -0.416 5.416 21 C -0.187 4.187 22 C -0.040 4.040 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.229 0.771 38 H 0.224 0.776 39 H 0.102 0.898 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.623 -23.179 -3.597 23.465 hybrid contribution 0.511 1.099 -0.986 1.562 sum 1.134 -22.080 -4.584 22.580 Atomic orbital electron populations 1.69953 1.06053 1.26633 1.50963 1.25031 0.94843 0.99216 0.95413 0.86671 0.79594 0.83210 0.78597 1.20289 1.21303 1.20239 1.21259 0.92993 0.91226 1.50441 0.92808 1.19078 0.94007 0.91311 0.97119 1.21598 0.99105 0.93862 1.00149 1.21678 0.97848 0.93712 1.02062 1.22528 0.96603 0.88622 1.00526 1.65328 1.14310 1.01924 1.40925 1.21678 0.94355 0.89137 1.00377 1.20390 0.94991 0.93885 0.96091 1.20180 1.01410 0.91962 1.04601 1.20753 0.93358 0.99211 0.95734 1.20491 1.01392 0.92467 1.08028 1.17205 0.86631 0.91503 0.91428 1.42491 1.26110 1.11109 1.61917 1.20122 0.97751 0.95993 1.04841 1.21415 0.98661 0.90905 0.93013 0.92995 0.96795 0.96599 0.93310 0.93666 0.92714 0.91467 0.90290 0.94683 0.92099 0.89172 0.86453 0.85967 0.86140 0.77137 0.77555 0.89806 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.12 -2.00 5.01 -26.73 -0.13 -2.13 16 12 C 0.04 0.65 4.74 -3.82 -0.02 0.64 16 13 N -0.50 -7.03 5.55 -234.90 -1.30 -8.34 16 14 C 0.07 0.87 6.61 -4.10 -0.03 0.85 16 15 C -0.05 -0.64 6.27 -104.34 -0.65 -1.29 16 16 C -0.16 -1.70 10.03 -39.62 -0.40 -2.10 16 17 C -0.07 -0.68 10.04 -39.61 -0.40 -1.08 16 18 C -0.20 -1.98 9.90 -39.38 -0.39 -2.37 16 19 C 0.24 2.63 6.75 -83.82 -0.57 2.06 16 20 N -0.88 -7.49 9.09 32.40 0.29 -7.20 16 21 C -0.18 -2.30 6.20 -104.07 -0.65 -2.94 16 22 C 0.09 1.16 4.99 -4.11 -0.02 1.14 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.94 7.26 -51.93 -0.38 0.56 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.50 7.90 -51.93 -0.41 0.09 16 32 H 0.06 0.69 7.69 -51.93 -0.40 0.30 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.40 3.28 8.50 -40.82 -0.35 2.93 16 38 H 0.40 2.46 8.84 -40.82 -0.36 2.10 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.76 7.60 -51.92 -0.39 0.36 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -31.80 327.16 -10.78 -42.59 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.48 Total: 0.76 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -3.94 Total: -23.02 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.27 Total: -42.16 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.80 -10.78 -42.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694978733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.012 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds