Wall clock time and date at job start Mon Mar 30 2020 06:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48500 * 109.47400 * 239.99995 * 3 2 1 5 5 H 1.48507 * 109.46894 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46986 * 119.99894 * 3 2 1 7 7 C 1.37884 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99663 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47143 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46821 * 174.75722 * 12 11 10 14 14 C 1.48056 * 110.99855 * 174.80462 * 13 12 11 15 15 C 1.51189 * 105.74597 * 213.03256 * 14 13 12 16 16 C 1.38106 * 131.86953 * 197.47917 * 15 14 13 17 17 C 1.38267 * 120.24558 * 180.02562 * 16 15 14 18 18 C 1.38130 * 120.08493 * 0.02562 * 17 16 15 19 19 C 1.38899 * 119.91612 * 359.97438 * 18 17 16 20 20 N 1.39675 * 120.05955 * 179.97438 * 19 18 17 21 21 C 1.38496 * 108.15379 * 17.53125 * 15 14 13 22 22 C 1.48049 * 111.00144 * 59.82873 * 13 12 11 23 23 H 0.96996 * 120.00244 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46996 * 59.99831 * 9 7 2 25 25 H 1.08994 * 109.46839 * 299.99827 * 9 7 2 26 26 H 1.08998 * 109.46963 * 59.99743 * 10 9 7 27 27 H 1.09007 * 109.46818 * 300.00178 * 10 9 7 28 28 H 1.08998 * 109.47349 * 59.99977 * 11 10 9 29 29 H 1.08997 * 109.47470 * 299.99822 * 11 10 9 30 30 H 1.09003 * 109.46720 * 54.76174 * 12 11 10 31 31 H 1.08999 * 109.47452 * 294.76172 * 12 11 10 32 32 H 1.09000 * 110.20976 * 332.12280 * 14 13 12 33 33 H 1.09004 * 110.21062 * 93.93656 * 14 13 12 34 34 H 1.07996 * 119.84631 * 0.02562 * 16 15 14 35 35 H 1.07992 * 119.95398 * 179.97438 * 17 16 15 36 36 H 1.08004 * 120.03683 * 179.97438 * 18 17 16 37 37 H 0.96993 * 119.99921 * 180.02562 * 20 19 18 38 38 H 0.97005 * 120.00052 * 0.02562 * 20 19 18 39 39 H 1.09005 * 110.21251 * 265.97148 * 22 13 12 40 40 H 1.09008 * 110.20980 * 27.79244 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 7 1.7445 -7.4184 0.1278 14 6 2.6628 -8.5735 0.0075 15 6 1.8609 -9.6674 -0.6603 16 6 2.0591 -11.0312 -0.7513 17 6 1.1549 -11.8223 -1.4356 18 6 0.0480 -11.2509 -2.0326 19 6 -0.1564 -9.8799 -1.9443 20 7 -1.2743 -9.2989 -2.5473 21 6 0.7533 -9.0879 -1.2566 22 6 0.7977 -7.5995 -0.9960 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8878 28 1 0.8547 -5.0450 -0.8895 29 1 0.8528 -5.0448 0.8904 30 1 3.1608 -6.0408 0.8417 31 1 3.0386 -6.1464 -0.9309 32 1 3.5229 -8.3083 -0.6074 33 1 2.9921 -8.8972 0.9949 34 1 2.9238 -11.4808 -0.2859 35 1 1.3147 -12.8881 -1.5041 36 1 -0.6576 -11.8696 -2.5673 37 1 -1.4160 -8.3414 -2.4855 38 1 -1.9090 -9.8531 -3.0280 39 1 -0.1915 -7.2363 -0.7172 40 1 1.1568 -7.0718 -1.8797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694978733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:17 Heat of formation + Delta-G solvation = -4.062739 kcal Electronic energy + Delta-G solvation = -18489.629018 eV Core-core repulsion = 15688.235356 eV Total energy + Delta-G solvation = -2801.393661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38624 -38.55770 -36.43101 -35.38268 -34.42226 -32.19102 -30.33434 -29.67111 -28.07133 -26.67987 -24.49857 -22.57030 -22.31485 -21.82194 -21.40760 -18.42955 -18.00766 -17.43226 -17.07730 -16.55368 -16.38007 -16.03994 -15.75575 -15.30393 -14.57393 -14.44684 -14.21338 -14.10509 -13.71948 -13.65537 -13.47749 -13.12901 -12.84940 -12.73898 -12.31999 -12.27030 -12.07301 -12.02163 -11.93604 -11.45020 -11.35858 -11.31068 -11.01623 -10.55132 -9.97135 -9.18101 -8.39738 -8.19975 -6.31557 0.43668 0.71190 1.39373 1.42892 1.50789 2.40819 2.90461 2.94183 3.02840 3.12714 3.46137 3.64117 4.05646 4.12349 4.20246 4.37089 4.42156 4.46177 4.52492 4.60078 4.61866 4.70315 4.75174 4.84941 4.89455 5.01456 5.08301 5.19129 5.26839 5.32204 5.35101 5.53924 5.56897 5.65836 5.76893 5.84922 5.87630 5.98573 6.03780 6.25590 6.58040 6.85841 6.97557 7.37738 8.91815 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041781 B = 0.003102 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.000025 B = 9022.887415 C = 9563.576982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.104 4.104 12 C 0.056 3.944 13 N -0.515 5.515 14 C 0.073 3.927 15 C -0.068 4.068 16 C -0.170 4.170 17 C -0.070 4.070 18 C -0.206 4.206 19 C 0.227 3.773 20 N -0.872 5.872 21 C -0.210 4.210 22 C 0.091 3.909 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.400 0.600 38 H 0.408 0.592 39 H 0.074 0.926 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -24.577 -4.480 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.072 4.072 13 N -0.239 5.239 14 C -0.054 4.054 15 C -0.070 4.070 16 C -0.190 4.190 17 C -0.088 4.088 18 C -0.229 4.229 19 C 0.121 3.879 20 N -0.411 5.411 21 C -0.215 4.215 22 C -0.037 4.037 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.229 0.771 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.848 -24.438 -3.938 24.822 hybrid contribution 0.059 1.415 -0.899 1.678 sum 1.907 -23.023 -4.837 23.603 Atomic orbital electron populations 1.70094 1.07875 1.27845 1.51697 1.26024 0.95795 1.03485 0.94713 0.85489 0.78275 0.77971 0.79250 1.19084 1.20795 1.19093 1.21727 0.93613 0.92504 1.50559 0.92102 1.19003 0.94480 0.93265 0.94553 1.21398 0.97986 0.93390 1.00643 1.21484 0.97976 0.93327 1.01387 1.22332 0.95693 0.87950 1.01235 1.65273 1.14966 1.02189 1.41427 1.21703 0.94139 0.88444 1.01117 1.20551 0.95074 0.94722 0.96611 1.20473 1.02362 0.91378 1.04795 1.21159 0.92576 1.00655 0.94413 1.20846 1.02003 0.92116 1.07894 1.17438 0.86923 0.92155 0.91383 1.42491 1.25754 1.11334 1.61521 1.20176 0.99120 0.95490 1.06727 1.21317 0.97988 0.91916 0.92457 0.92764 0.99288 0.99308 0.92756 0.93030 0.93032 0.92598 0.89479 0.94003 0.91426 0.88244 0.84639 0.83040 0.83849 0.77140 0.76208 0.90764 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -4.02 5.15 30.59 0.16 -3.86 16 11 C -0.10 -3.65 5.01 30.59 0.15 -3.50 16 12 C 0.06 1.59 4.74 86.30 0.41 2.00 16 13 N -0.52 -14.29 5.55 -897.10 -4.98 -19.28 16 14 C 0.07 1.70 6.61 85.49 0.56 2.26 16 15 C -0.07 -1.61 6.27 -19.68 -0.12 -1.73 16 16 C -0.17 -3.24 10.03 22.25 0.22 -3.02 16 17 C -0.07 -1.14 10.04 22.25 0.22 -0.92 16 18 C -0.21 -3.60 9.90 22.40 0.22 -3.38 16 19 C 0.23 4.80 6.75 38.20 0.26 5.06 16 20 N -0.87 -14.25 9.09 -51.42 -0.47 -14.72 16 21 C -0.21 -5.23 6.20 -19.51 -0.12 -5.35 16 22 C 0.09 2.45 4.99 85.49 0.43 2.88 16 23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 24 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.05 1.82 7.26 -2.39 -0.02 1.81 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.04 1.14 7.90 -2.39 -0.02 1.12 16 32 H 0.07 1.46 7.69 -2.39 -0.02 1.44 16 33 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.40 6.57 8.50 -92.71 -0.79 5.78 16 38 H 0.41 4.55 8.84 -92.70 -0.82 3.73 16 39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.05 1.36 7.60 -2.38 -0.02 1.34 16 Total: -1.00 -68.51 327.16 -0.48 -68.99 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -0.58 Total: 15.39 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 3.24 Total: -39.43 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -5.16 Total: -91.85 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.51 -0.48 -68.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694978733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.923 kcal (2) G-P(sol) polarization free energy of solvation -68.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds